RNA–Protein interactions for RNA: ENST00000409531.5

TSPAN4-208, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,339 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-208ENST00000409531 NGLY1Q96IV0 654 aa22.88■■□□□ 1.25
TSPAN4-208ENST00000409531 CABP1Q9NZU7 370 aa22.88■■□□□ 1.25
TSPAN4-208ENST00000409531 POLR3AO14802 1390 aaPredicted RBP22.88■■□□□ 1.25
TSPAN4-208ENST00000409531 ARHGEF10O15013 1369 aa22.88■■□□□ 1.25
TSPAN4-208ENST00000409531 PAK3O75914 559 aaPredicted RBP22.87■■□□□ 1.25
TSPAN4-208ENST00000409531 POLR3GLQ9BT43 218 aa22.87■■□□□ 1.25
TSPAN4-208ENST00000409531 WASHC2AQ641Q2 1341 aa22.87■■□□□ 1.25
TSPAN4-208ENST00000409531 NINLQ9Y2I6 1382 aa22.87■■□□□ 1.25
TSPAN4-208ENST00000409531 TOPAZ1Q8N9V7 1692 aa22.86■■□□□ 1.25
TSPAN4-208ENST00000409531 PPIP5K1Q6PFW1 1433 aa22.86■■□□□ 1.25
TSPAN4-208ENST00000409531 AFF2P51816 1311 aa22.85■■□□□ 1.25
TSPAN4-208ENST00000409531 CABLES1Q8TDN4 633 aa22.84■■□□□ 1.25
TSPAN4-208ENST00000409531 MYOM1P52179 1685 aa22.83■■□□□ 1.25
TSPAN4-208ENST00000409531 HAP1P54257 671 aaPredicted RBP22.82■■□□□ 1.24
TSPAN4-208ENST00000409531 PLEKHG5O94827 1062 aa22.82■■□□□ 1.24
TSPAN4-208ENST00000409531 FNBP4Q8N3X1 1017 aaPredicted RBP22.82■■□□□ 1.24
TSPAN4-208ENST00000409531 TMC1Q8TDI8 760 aa22.81■■□□□ 1.24
TSPAN4-208ENST00000409531 ZNF692Q9BU19 519 aaPredicted RBP22.8■■□□□ 1.24
TSPAN4-208ENST00000409531 TRPM3Q9HCF6 1732 aaPredicted RBP22.8■■□□□ 1.24
TSPAN4-208ENST00000409531 QTRT2Q9H974 415 aaKnown RBP22.79■■□□□ 1.24
TSPAN4-208ENST00000409531 USP21Q9UK80 565 aa22.79■■□□□ 1.24
TSPAN4-208ENST00000409531 BRD4O60885 1362 aaPredicted RBP22.77■■□□□ 1.24
TSPAN4-208ENST00000409531 ABTB2Q8N961 1025 aa22.77■■□□□ 1.24
TSPAN4-208ENST00000409531 RXRBP28702 533 aa22.76■■□□□ 1.23
TSPAN4-208ENST00000409531 UPF1Q92900 1129 aaKnown RBP eCLIP22.76■■□□□ 1.232e-9■■■■■ 55.1
TSPAN4-208ENST00000409531 SLC12A5Q9H2X9 1139 aa22.76■■□□□ 1.23
TSPAN4-208ENST00000409531 TERF2IPQ9NYB0 399 aa22.76■■□□□ 1.23
TSPAN4-208ENST00000409531 ALS2Q96Q42 1657 aa22.75■■□□□ 1.23
TSPAN4-208ENST00000409531 AKAP12Q02952 1782 aa22.75■■□□□ 1.23
TSPAN4-208ENST00000409531 HDGFL2Q7Z4V5 671 aaPredicted RBP22.74■■□□□ 1.23
TSPAN4-208ENST00000409531 USP6P35125 1406 aa22.73■■□□□ 1.23
TSPAN4-208ENST00000409531 NUTM2GQ5VZR2 741 aa22.73■■□□□ 1.23
TSPAN4-208ENST00000409531 ANKRD36BQ8N2N9 1353 aa22.73■■□□□ 1.23
TSPAN4-208ENST00000409531 NLRP13Q86W25 1043 aa22.72■■□□□ 1.23
TSPAN4-208ENST00000409531 TRPC5Q9UL62 973 aaPredicted RBP22.72■■□□□ 1.23
TSPAN4-208ENST00000409531 FAM83GA6ND36 823 aa22.71■■□□□ 1.23
TSPAN4-208ENST00000409531 RBM6P78332 1123 aaKnown RBP22.71■■□□□ 1.23
TSPAN4-208ENST00000409531 DDX10Q13206 875 aaKnown RBP22.7■■□□□ 1.22
TSPAN4-208ENST00000409531 BCL9LQ86UU0 1499 aa22.7■■□□□ 1.22
TSPAN4-208ENST00000409531 MON2Q7Z3U7 1717 aa22.7■■□□□ 1.22
TSPAN4-208ENST00000409531 CPSF1Q10570 1443 aaKnown RBP22.7■■□□□ 1.22
TSPAN4-208ENST00000409531 SSH2Q76I76 1423 aa22.7■■□□□ 1.22
TSPAN4-208ENST00000409531 CD163L1Q9NR16 1453 aa22.69■■□□□ 1.22
TSPAN4-208ENST00000409531 A0A1W2PP64 1363 aa22.69■■□□□ 1.22
TSPAN4-208ENST00000409531 UNC5CLQ8IV45 518 aa22.69■■□□□ 1.22
TSPAN4-208ENST00000409531 PANK3Q9H999 370 aa22.69■■□□□ 1.22
TSPAN4-208ENST00000409531 MARF1Q9Y4F3 1742 aaKnown RBP22.69■■□□□ 1.22
TSPAN4-208ENST00000409531 TTC21BQ7Z4L5 1316 aa22.68■■□□□ 1.22
TSPAN4-208ENST00000409531 KTN1Q86UP2 1357 aaKnown RBP22.67■■□□□ 1.22
TSPAN4-208ENST00000409531 SLIT2O94813 1529 aa22.67■■□□□ 1.22
TSPAN4-208ENST00000409531 NLRP6P59044 892 aa22.67■■□□□ 1.22
TSPAN4-208ENST00000409531 TTC21AQ8NDW8 1320 aa22.65■■□□□ 1.22
TSPAN4-208ENST00000409531 GCP02774 474 aa22.64■■□□□ 1.22
TSPAN4-208ENST00000409531 ZC3H6P61129 1189 aaKnown RBP22.64■■□□□ 1.22
TSPAN4-208ENST00000409531 PRDM11Q9NQV5 511 aa22.64■■□□□ 1.22
TSPAN4-208ENST00000409531 USP19O94966 1318 aa22.64■■□□□ 1.21
TSPAN4-208ENST00000409531 ABCA3Q99758 1704 aa22.64■■□□□ 1.21
TSPAN4-208ENST00000409531 ATRNO75882 1429 aa22.64■■□□□ 1.21
TSPAN4-208ENST00000409531 EDC4Q6P2E9 1401 aaKnown RBP22.64■■□□□ 1.21
TSPAN4-208ENST00000409531 GJD4Q96KN9 370 aaPredicted RBP22.63■■□□□ 1.21
TSPAN4-208ENST00000409531 BTG4Q9NY30 223 aa22.62■■□□□ 1.21
TSPAN4-208ENST00000409531 KNSTRNQ9Y448 316 aa22.62■■□□□ 1.21
TSPAN4-208ENST00000409531 NRKQ7Z2Y5 1582 aa22.61■■□□□ 1.21
TSPAN4-208ENST00000409531 KIAA0232Q92628 1395 aa22.61■■□□□ 1.21
TSPAN4-208ENST00000409531 NSD3Q9BZ95 1437 aa22.61■■□□□ 1.21
TSPAN4-208ENST00000409531 CDK12Q9NYV4 1490 aaPredicted RBP22.61■■□□□ 1.21
TSPAN4-208ENST00000409531 CRYBG1Q9Y4K1 1723 aa22.6■■□□□ 1.21
TSPAN4-208ENST00000409531 VPS72Q15906 364 aa22.59■■□□□ 1.21
TSPAN4-208ENST00000409531 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.59■■□□□ 1.21
TSPAN4-208ENST00000409531 CARD14Q9BXL6 1004 aa22.59■■□□□ 1.21
TSPAN4-208ENST00000409531 CHRNA2Q15822 529 aa22.58■■□□□ 1.21
TSPAN4-208ENST00000409531 KIF20BQ96Q89 1820 aa22.58■■□□□ 1.21
TSPAN4-208ENST00000409531 PER1O15534 1290 aaPredicted RBP22.57■■□□□ 1.2
TSPAN4-208ENST00000409531 CPDO75976 1380 aa22.57■■□□□ 1.2
TSPAN4-208ENST00000409531 CGNL1Q0VF96 1302 aa22.57■■□□□ 1.2
TSPAN4-208ENST00000409531 KCNH5Q8NCM2 988 aa22.57■■□□□ 1.2
TSPAN4-208ENST00000409531 CCDC9Q9Y3X0 531 aaKnown RBP22.56■■□□□ 1.2
TSPAN4-208ENST00000409531 COL14A1Q05707 1796 aaKnown RBP22.55■■□□□ 1.2
TSPAN4-208ENST00000409531 NWD2Q9ULI1 1742 aa22.55■■□□□ 1.2
TSPAN4-208ENST00000409531 PHRF1Q9P1Y6 1649 aaKnown RBP22.55■■□□□ 1.2
TSPAN4-208ENST00000409531 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.55■■□□□ 1.2
TSPAN4-208ENST00000409531 NSD2O96028 1365 aa22.54■■□□□ 1.2
TSPAN4-208ENST00000409531 NME9Q86XW9 330 aa22.54■■□□□ 1.2
TSPAN4-208ENST00000409531 PIK3C2AO00443 1686 aa22.53■■□□□ 1.2
TSPAN4-208ENST00000409531 PLCH1Q4KWH8 1693 aa22.53■■□□□ 1.2
TSPAN4-208ENST00000409531 USP31Q70CQ4 1352 aa22.53■■□□□ 1.2
TSPAN4-208ENST00000409531 NPC1L1Q9UHC9 1359 aa22.53■■□□□ 1.2
TSPAN4-208ENST00000409531 ZRANB1Q9UGI0 708 aa22.53■■□□□ 1.2
TSPAN4-208ENST00000409531 ANKRD26Q9UPS8 1709 aa22.52■■□□□ 1.2
TSPAN4-208ENST00000409531 RGS12O14924 1447 aa22.52■■□□□ 1.2
TSPAN4-208ENST00000409531 EVA1CP58658 441 aa22.52■■□□□ 1.2
TSPAN4-208ENST00000409531 SLIT3O75094 1523 aa22.51■■□□□ 1.19
TSPAN4-208ENST00000409531 ONECUT3O60422 494 aaPredicted RBP22.51■■□□□ 1.19
TSPAN4-208ENST00000409531 AMER1Q5JTC6 1135 aaPredicted RBP22.51■■□□□ 1.19
TSPAN4-208ENST00000409531 ARHGEF25Q86VW2 580 aa22.5■■□□□ 1.19
TSPAN4-208ENST00000409531 STRN4Q9NRL3 753 aa22.5■■□□□ 1.19
TSPAN4-208ENST00000409531 ZBTB7CA1YPR0 619 aa22.49■■□□□ 1.19
TSPAN4-208ENST00000409531 FYB1O15117 783 aa22.49■■□□□ 1.19
TSPAN4-208ENST00000409531 SOX12O15370 315 aa22.49■■□□□ 1.19
TSPAN4-208ENST00000409531 USP54Q70EL1 1684 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms