RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 CHMP7Q8WUX9 453 aaPredicted RBP8.52□□□□□ -1.05
CLK1-202ENST00000409403 PRM3Q9NNZ6 103 aa8.52□□□□□ -1.05
CLK1-202ENST00000409403 WIZO95785 1651 aa8.52□□□□□ -1.05
CLK1-202ENST00000409403 MAGI1Q96QZ7 1491 aaPredicted RBP8.51□□□□□ -1.05
CLK1-202ENST00000409403 HELBQ8NG08 1087 aaPredicted RBP8.51□□□□□ -1.05
CLK1-202ENST00000409403 SOWAHBA6NEL2 793 aa8.5□□□□□ -1.05
CLK1-202ENST00000409403 MORN1Q5T089 497 aa8.5□□□□□ -1.05
CLK1-202ENST00000409403 PPP4CP60510 307 aa8.49□□□□□ -1.05
CLK1-202ENST00000409403 TSC1Q92574 1164 aa8.49□□□□□ -1.05
CLK1-202ENST00000409403 GDPD2Q9HCC8 539 aa8.49□□□□□ -1.05
CLK1-202ENST00000409403 PBRM1Q86U86 1689 aa8.49□□□□□ -1.05
CLK1-202ENST00000409403 CFAP99D6REC4 459 aa8.49□□□□□ -1.05
CLK1-202ENST00000409403 CTDSPL2Q05D32 466 aa8.49□□□□□ -1.05
CLK1-202ENST00000409403 PUS10Q3MIT2 529 aaKnown RBP8.49□□□□□ -1.05
CLK1-202ENST00000409403 HPS5Q9UPZ3 1129 aa8.49□□□□□ -1.05
CLK1-202ENST00000409403 SHROOM2Q13796 1616 aa8.49□□□□□ -1.05
CLK1-202ENST00000409403 KIF21BO75037 1637 aa8.48□□□□□ -1.05
CLK1-202ENST00000409403 BCAMP50895 628 aa8.48□□□□□ -1.05
CLK1-202ENST00000409403 Q3C1V9 767 aa8.48□□□□□ -1.05
CLK1-202ENST00000409403 WNT2BQ93097 391 aa8.48□□□□□ -1.05
CLK1-202ENST00000409403 ARID3AQ99856 593 aa8.48□□□□□ -1.05
CLK1-202ENST00000409403 TSR3Q9UJK0 312 aaKnown RBP8.48□□□□□ -1.05
CLK1-202ENST00000409403 SLC27A5Q9Y2P5 690 aa8.48□□□□□ -1.05
CLK1-202ENST00000409403 TDRD9Q8NDG6 1382 aaKnown RBP8.48□□□□□ -1.05
CLK1-202ENST00000409403 COL17A1Q9UMD9 1497 aaPredicted RBP8.47□□□□□ -1.05
CLK1-202ENST00000409403 WWC1Q8IX03 1113 aa8.47□□□□□ -1.05
CLK1-202ENST00000409403 SYMPKQ92797 1274 aaKnown RBP8.47□□□□□ -1.05
CLK1-202ENST00000409403 ZNF777Q9ULD5 760 aaPredicted RBP8.47□□□□□ -1.05
CLK1-202ENST00000409403 ADCY10Q96PN6 1610 aa8.47□□□□□ -1.05
CLK1-202ENST00000409403 POLA1P09884 1462 aaPredicted RBP8.47□□□□□ -1.05
CLK1-202ENST00000409403 RAD54L2Q9Y4B4 1467 aa8.47□□□□□ -1.05
CLK1-202ENST00000409403 RETREG3Q86VR2 466 aa8.46□□□□□ -1.05
CLK1-202ENST00000409403 PRR7Q8TB68 274 aa8.46□□□□□ -1.05
CLK1-202ENST00000409403 TBC1D2BQ9UPU7 963 aa8.46□□□□□ -1.05
CLK1-202ENST00000409403 ZNF330Q9Y3S2 320 aaPredicted RBP8.46□□□□□ -1.05
CLK1-202ENST00000409403 ABL2P42684 1182 aa8.46□□□□□ -1.06
CLK1-202ENST00000409403 GJD4Q96KN9 370 aaPredicted RBP8.46□□□□□ -1.06
CLK1-202ENST00000409403 APLP1P51693 650 aa8.45□□□□□ -1.06
CLK1-202ENST00000409403 HMX1Q9NP08 348 aaPredicted RBP8.45□□□□□ -1.06
CLK1-202ENST00000409403 NDUFB9Q9Y6M9 179 aa8.45□□□□□ -1.06
CLK1-202ENST00000409403 ZEB1P37275 1124 aaPredicted RBP8.44□□□□□ -1.06
CLK1-202ENST00000409403 CCDC82Q8N4S0 544 aa8.44□□□□□ -1.06
CLK1-202ENST00000409403 LRRN4Q8WUT4 740 aa8.44□□□□□ -1.06
CLK1-202ENST00000409403 PCDHB3Q9Y5E6 796 aa8.44□□□□□ -1.06
CLK1-202ENST00000409403 SALL2Q9Y467 1007 aaPredicted RBP8.43□□□□□ -1.06
CLK1-202ENST00000409403 WDR97A6NE52 1622 aa8.43□□□□□ -1.06
CLK1-202ENST00000409403 MED1Q15648 1581 aaPredicted RBP8.43□□□□□ -1.06
CLK1-202ENST00000409403 DESI1Q6ICB0 168 aa8.43□□□□□ -1.06
CLK1-202ENST00000409403 TRIM34Q9BYJ4 488 aa8.43□□□□□ -1.06
CLK1-202ENST00000409403 NR1I2O75469 434 aa8.42□□□□□ -1.06
CLK1-202ENST00000409403 BLOC1S3Q6QNY0 202 aa8.42□□□□□ -1.06
CLK1-202ENST00000409403 RNF19BQ6ZMZ0 732 aa8.42□□□□□ -1.06
CLK1-202ENST00000409403 ABCC8Q09428 1581 aa8.42□□□□□ -1.06
CLK1-202ENST00000409403 PTPRMP28827 1452 aa8.42□□□□□ -1.06
CLK1-202ENST00000409403 SCUBE3Q8IX30 993 aa8.41□□□□□ -1.06
CLK1-202ENST00000409403 USB1Q9BQ65 265 aaKnown RBP8.41□□□□□ -1.06
CLK1-202ENST00000409403 WBP1LQ9NX94 342 aa8.41□□□□□ -1.06
CLK1-202ENST00000409403 BRICD5Q6PL45 260 aa8.4□□□□□ -1.06
CLK1-202ENST00000409403 PCGF6Q9BYE7 350 aa8.4□□□□□ -1.06
CLK1-202ENST00000409403 GRIN2BQ13224 1484 aa8.4□□□□□ -1.06
CLK1-202ENST00000409403 PER1O15534 1290 aaPredicted RBP8.4□□□□□ -1.07
CLK1-202ENST00000409403 FMNL1O95466 1100 aaPredicted RBP8.4□□□□□ -1.07
CLK1-202ENST00000409403 THSD4Q6ZMP0 1018 aa8.4□□□□□ -1.07
CLK1-202ENST00000409403 CCDC97Q96F63 343 aaPredicted RBP8.4□□□□□ -1.07
CLK1-202ENST00000409403 SERPINA10Q9UK55 444 aa8.4□□□□□ -1.07
CLK1-202ENST00000409403 ADAMTSL3P82987 1691 aa8.4□□□□□ -1.07
CLK1-202ENST00000409403 PPARGC1BQ86YN6 1023 aaKnown RBP8.39□□□□□ -1.07
CLK1-202ENST00000409403 GPR37L1O60883 481 aa8.38□□□□□ -1.07
CLK1-202ENST00000409403 IRF5Q13568 498 aa8.38□□□□□ -1.07
CLK1-202ENST00000409403 WASHC4Q2M389 1173 aa8.38□□□□□ -1.07
CLK1-202ENST00000409403 LYPD8Q6UX82 237 aa8.38□□□□□ -1.07
CLK1-202ENST00000409403 EPS8L1Q8TE68 723 aa8.38□□□□□ -1.07
CLK1-202ENST00000409403 THAP11Q96EK4 314 aa8.38□□□□□ -1.07
CLK1-202ENST00000409403 HSPA2P54652 639 aa8.37□□□□□ -1.07
CLK1-202ENST00000409403 NR6A1Q15406 480 aa8.37□□□□□ -1.07
CLK1-202ENST00000409403 KCTD12Q96CX2 325 aaKnown RBP8.37□□□□□ -1.07
CLK1-202ENST00000409403 HCSTQ9UBK5 93 aa8.37□□□□□ -1.07
CLK1-202ENST00000409403 POM121CA8CG34 1229 aa8.36□□□□□ -1.07
CLK1-202ENST00000409403 NYAP1Q6ZVC0 841 aa8.36□□□□□ -1.07
CLK1-202ENST00000409403 CALR3Q96L12 384 aaKnown RBP8.36□□□□□ -1.07
CLK1-202ENST00000409403 PNMA1Q8ND90 353 aa8.35□□□□□ -1.07
CLK1-202ENST00000409403 GLMNQ92990 594 aa8.35□□□□□ -1.07
CLK1-202ENST00000409403 MADDQ8WXG6 1647 aa8.34□□□□□ -1.07
CLK1-202ENST00000409403 COPS2P61201 443 aa8.34□□□□□ -1.07
CLK1-202ENST00000409403 GRIN2AQ12879 1464 aa8.34□□□□□ -1.07
CLK1-202ENST00000409403 JUNDP17535 347 aa8.34□□□□□ -1.08
CLK1-202ENST00000409403 SPSB2Q99619 263 aa8.34□□□□□ -1.08
CLK1-202ENST00000409403 MAP3K4Q9Y6R4 1608 aa8.33□□□□□ -1.08
CLK1-202ENST00000409403 SOGA1O94964 1423 aa8.33□□□□□ -1.08
CLK1-202ENST00000409403 PTPRNQ16849 979 aa8.33□□□□□ -1.08
CLK1-202ENST00000409403 MSS51Q4VC12 460 aa8.33□□□□□ -1.08
CLK1-202ENST00000409403 GLI2P10070 1586 aa8.32□□□□□ -1.08
CLK1-202ENST00000409403 NUP160Q12769 1436 aa8.32□□□□□ -1.08
CLK1-202ENST00000409403 VAC14Q08AM6 782 aa8.32□□□□□ -1.08
CLK1-202ENST00000409403 RIMS1Q86UR5 1692 aaKnown RBP8.31□□□□□ -1.08
CLK1-202ENST00000409403 F12P00748 615 aaPredicted RBP8.31□□□□□ -1.08
CLK1-202ENST00000409403 PRG4Q92954 1404 aaPredicted RBP8.31□□□□□ -1.08
CLK1-202ENST00000409403 HDGFL1Q5TGJ6 251 aa8.3□□□□□ -1.08
CLK1-202ENST00000409403 FAM160A2Q8N612 972 aaPredicted RBP8.3□□□□□ -1.08
CLK1-202ENST00000409403 ZPR1O75312 459 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms