RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 KIF13AQ9H1H9 1805 aa14.42□□□□□ -0.1
TCOF1-203ENST00000394269 RGS3P49796 1198 aa14.42□□□□□ -0.1
TCOF1-203ENST00000394269 MSH5O43196 834 aa14.42□□□□□ -0.1
TCOF1-203ENST00000394269 TMPOP42166 694 aaKnown RBP14.42□□□□□ -0.1
TCOF1-203ENST00000394269 HSPA2P54652 639 aa14.42□□□□□ -0.1
TCOF1-203ENST00000394269 C14orf37Q86TY3 774 aa14.42□□□□□ -0.1
TCOF1-203ENST00000394269 ARHGEF40Q8TER5 1519 aa14.42□□□□□ -0.1
TCOF1-203ENST00000394269 NSD2O96028 1365 aa14.42□□□□□ -0.1
TCOF1-203ENST00000394269 NUTM2GQ5VZR2 741 aa14.41□□□□□ -0.1
TCOF1-203ENST00000394269 TRMT2AQ8IZ69 625 aaKnown RBP14.41□□□□□ -0.1
TCOF1-203ENST00000394269 THUMPD2Q9BTF0 503 aaKnown RBP14.41□□□□□ -0.1
TCOF1-203ENST00000394269 TNNQ9UQP3 1299 aa14.41□□□□□ -0.1
TCOF1-203ENST00000394269 ROBO2Q9HCK4 1378 aa14.41□□□□□ -0.1
TCOF1-203ENST00000394269 NINLQ9Y2I6 1382 aa14.41□□□□□ -0.1
TCOF1-203ENST00000394269 THEMISQ8N1K5 641 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-203ENST00000394269 NKTRP30414 1462 aaKnown RBP14.4□□□□□ -0.1
TCOF1-203ENST00000394269 NGDNQ8NEJ9 315 aaKnown RBP14.4□□□□□ -0.1
TCOF1-203ENST00000394269 SPATA31D1Q6ZQQ2 1576 aa14.4□□□□□ -0.1
TCOF1-203ENST00000394269 ELL2O00472 640 aaPredicted RBP14.4□□□□□ -0.1
TCOF1-203ENST00000394269 MYH16Q9H6N6 1097 aa14.4□□□□□ -0.1
TCOF1-203ENST00000394269 PRR36Q9H6K5 1346 aa14.4□□□□□ -0.1
TCOF1-203ENST00000394269 EXOSC9Q06265 439 aaKnown RBP14.39□□□□□ -0.11
TCOF1-203ENST00000394269 NGEFQ8N5V2 710 aa14.38□□□□□ -0.11
TCOF1-203ENST00000394269 ACEP12821 1306 aa14.38□□□□□ -0.11
TCOF1-203ENST00000394269 PAK3O75914 559 aaPredicted RBP14.38□□□□□ -0.11
TCOF1-203ENST00000394269 WDR63Q8IWG1 891 aa14.38□□□□□ -0.11
TCOF1-203ENST00000394269 PHACTR3Q96KR7 559 aa14.38□□□□□ -0.11
TCOF1-203ENST00000394269 CD163L1Q9NR16 1453 aa14.38□□□□□ -0.11
TCOF1-203ENST00000394269 TCERG1O14776 1098 aaKnown RBP14.38□□□□□ -0.11
TCOF1-203ENST00000394269 RARSP54136 660 aaKnown RBP14.37□□□□□ -0.11
TCOF1-203ENST00000394269 PLEKHF1Q96S99 279 aa14.36□□□□□ -0.11
TCOF1-203ENST00000394269 SMC4Q9NTJ3 1288 aa14.36□□□□□ -0.11
TCOF1-203ENST00000394269 ZBTB7CA1YPR0 619 aa14.36□□□□□ -0.11
TCOF1-203ENST00000394269 BCL11AQ9H165 835 aa14.36□□□□□ -0.11
TCOF1-203ENST00000394269 TRIM35Q9UPQ4 493 aa14.36□□□□□ -0.11
TCOF1-203ENST00000394269 REREQ9P2R6 1566 aa14.36□□□□□ -0.11
TCOF1-203ENST00000394269 FTSJ3Q8IY81 847 aaKnown RBP14.35□□□□□ -0.11
TCOF1-203ENST00000394269 KCNA6P17658 529 aa14.35□□□□□ -0.11
TCOF1-203ENST00000394269 ZNF692Q9BU19 519 aaPredicted RBP14.35□□□□□ -0.11
TCOF1-203ENST00000394269 DCTN1Q14203 1278 aa14.34□□□□□ -0.11
TCOF1-203ENST00000394269 FCHSD2O94868 740 aa14.34□□□□□ -0.11
TCOF1-203ENST00000394269 RLBP1P12271 317 aa14.34□□□□□ -0.11
TCOF1-203ENST00000394269 PDE4AP27815 886 aa14.34□□□□□ -0.11
TCOF1-203ENST00000394269 PNNQ9H307 717 aaKnown RBP14.34□□□□□ -0.11
TCOF1-203ENST00000394269 FANCIQ9NVI1 1328 aa14.34□□□□□ -0.11
TCOF1-203ENST00000394269 ANP32AP39687 249 aaKnown RBP14.33□□□□□ -0.12
TCOF1-203ENST00000394269 FAM83GA6ND36 823 aa14.32□□□□□ -0.12
TCOF1-203ENST00000394269 TTC21BQ7Z4L5 1316 aa14.32□□□□□ -0.12
TCOF1-203ENST00000394269 HSP90AB2PQ58FF8 381 aa14.32□□□□□ -0.12
TCOF1-203ENST00000394269 SULT6B1Q6IMI4 303 aa14.32□□□□□ -0.12
TCOF1-203ENST00000394269 AEBP1Q8IUX7 1158 aa14.32□□□□□ -0.12
TCOF1-203ENST00000394269 ADAMTS13Q76LX8 1427 aa14.32□□□□□ -0.12
TCOF1-203ENST00000394269 LTV1Q96GA3 475 aaPredicted RBP14.31□□□□□ -0.12
TCOF1-203ENST00000394269 IGHDP01880 384 aa14.31□□□□□ -0.12
TCOF1-203ENST00000394269 CCDC27Q2M243 656 aa14.31□□□□□ -0.12
TCOF1-203ENST00000394269 CENPQQ7L2Z9 268 aaPredicted RBP14.31□□□□□ -0.12
TCOF1-203ENST00000394269 RSPH6AQ9H0K4 717 aa14.31□□□□□ -0.12
TCOF1-203ENST00000394269 LMOD2Q6P5Q4 547 aa14.3□□□□□ -0.12
TCOF1-203ENST00000394269 SSH1Q8WYL5 1049 aa14.3□□□□□ -0.12
TCOF1-203ENST00000394269 PHF23Q9BUL5 403 aaPredicted RBP14.3□□□□□ -0.12
TCOF1-203ENST00000394269 TBX22Q9Y458 520 aa14.3□□□□□ -0.12
TCOF1-203ENST00000394269 NLRP6P59044 892 aa14.3□□□□□ -0.12
TCOF1-203ENST00000394269 IL13P35225 146 aa14.29□□□□□ -0.12
TCOF1-203ENST00000394269 PLEKHG1Q9ULL1 1385 aa14.29□□□□□ -0.12
TCOF1-203ENST00000394269 ITPRIPQ8IWB1 547 aa14.29□□□□□ -0.12
TCOF1-203ENST00000394269 PDE3AQ14432 1141 aa14.29□□□□□ -0.12
TCOF1-203ENST00000394269 EDC4Q6P2E9 1401 aaKnown RBP14.29□□□□□ -0.12
TCOF1-203ENST00000394269 AMPHP49418 695 aa14.28□□□□□ -0.12
TCOF1-203ENST00000394269 SIRT1Q96EB6 747 aa14.28□□□□□ -0.12
TCOF1-203ENST00000394269 NLRP1Q9C000 1473 aa14.28□□□□□ -0.12
TCOF1-203ENST00000394269 ZKSCAN2Q63HK3 967 aa14.28□□□□□ -0.12
TCOF1-203ENST00000394269 ANKLE2Q86XL3 938 aa14.28□□□□□ -0.12
TCOF1-203ENST00000394269 NOB1Q9ULX3 412 aaKnown RBP14.28□□□□□ -0.12
TCOF1-203ENST00000394269 PTPRUQ92729 1446 aa14.28□□□□□ -0.12
TCOF1-203ENST00000394269 NFE2L2Q16236 605 aa14.27□□□□□ -0.13
TCOF1-203ENST00000394269 CPSF1Q10570 1443 aaKnown RBP14.27□□□□□ -0.13
TCOF1-203ENST00000394269 FAM135BQ49AJ0 1406 aa14.27□□□□□ -0.13
TCOF1-203ENST00000394269 XPCQ01831 940 aaPredicted RBP14.27□□□□□ -0.13
TCOF1-203ENST00000394269 EIF4A2Q14240 407 aaKnown RBP14.26□□□□□ -0.13
TCOF1-203ENST00000394269 DZIP1LQ8IYY4 767 aaKnown RBP14.26□□□□□ -0.13
TCOF1-203ENST00000394269 ABTB2Q8N961 1025 aa14.26□□□□□ -0.13
TCOF1-203ENST00000394269 ATP7BP35670 1465 aa14.26□□□□□ -0.13
TCOF1-203ENST00000394269 CPS1P31327 1500 aa14.25□□□□□ -0.13
TCOF1-203ENST00000394269 DLC1Q96QB1 1528 aa14.25□□□□□ -0.13
TCOF1-203ENST00000394269 TSPYL6Q8N831 410 aa14.25□□□□□ -0.13
TCOF1-203ENST00000394269 PCDHB15Q9Y5E8 787 aa14.25□□□□□ -0.13
TCOF1-203ENST00000394269 MCM10Q7L590 875 aa14.25□□□□□ -0.13
TCOF1-203ENST00000394269 BACH2Q9BYV9 841 aa14.25□□□□□ -0.13
TCOF1-203ENST00000394269 PNPLA6Q8IY17 1366 aa14.25□□□□□ -0.13
TCOF1-203ENST00000394269 SHPRHQ149N8 1683 aa14.24□□□□□ -0.13
TCOF1-203ENST00000394269 PLEKHG3A1L390 1219 aa14.24□□□□□ -0.13
TCOF1-203ENST00000394269 KDM2BQ8NHM5 1336 aa14.24□□□□□ -0.13
TCOF1-203ENST00000394269 NRXN3Q9Y4C0 1643 aa14.24□□□□□ -0.13
TCOF1-203ENST00000394269 TRIM27P14373 513 aa14.24□□□□□ -0.13
TCOF1-203ENST00000394269 ESCO1Q5FWF5 840 aa14.24□□□□□ -0.13
TCOF1-203ENST00000394269 MIS18AQ9NYP9 233 aa14.24□□□□□ -0.13
TCOF1-203ENST00000394269 ZBTB47Q9UFB7 747 aaPredicted RBP14.24□□□□□ -0.13
TCOF1-203ENST00000394269 IQSEC2Q5JU85 1478 aa14.23□□□□□ -0.13
TCOF1-203ENST00000394269 NBR1Q14596 966 aa14.22□□□□□ -0.13
TCOF1-203ENST00000394269 FOXO3O43524 673 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms