RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ZNHIT6Q9NWK9 470 aaKnown RBP15.27■□□□□ 0.03
CCDC88C-204ENST00000389857 MBD3O95983 291 aa15.27■□□□□ 0.03
CCDC88C-204ENST00000389857 GNL3LQ9NVN8 582 aaKnown RBP15.27■□□□□ 0.03
CCDC88C-204ENST00000389857 TSPY26PQ9H489 355 aa15.26■□□□□ 0.03
CCDC88C-204ENST00000389857 NLRP2Q9NX02 1062 aa15.26■□□□□ 0.03
CCDC88C-204ENST00000389857 DACH1Q9UI36 760 aa15.25■□□□□ 0.03
CCDC88C-204ENST00000389857 GOLGA6L10A6NI86 522 aa15.25■□□□□ 0.03
CCDC88C-204ENST00000389857 TTC39AQ5SRH9 613 aa15.25■□□□□ 0.03
CCDC88C-204ENST00000389857 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.25■□□□□ 0.036e-6■■■□□ 19.2
CCDC88C-204ENST00000389857 SEPT7Q16181 437 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-204ENST00000389857 JMYQ8N9B5 988 aa15.25■□□□□ 0.03
CCDC88C-204ENST00000389857 GAS2L2Q8NHY3 880 aa15.25■□□□□ 0.03
CCDC88C-204ENST00000389857 NEFHP12036 1026 aa15.24■□□□□ 0.03
CCDC88C-204ENST00000389857 LEKR1Q6ZMV7 388 aa15.24■□□□□ 0.03
CCDC88C-204ENST00000389857 DNAJC2Q99543 621 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-204ENST00000389857 STIM1Q13586 685 aa15.24■□□□□ 0.03
CCDC88C-204ENST00000389857 CCDC66A2RUB6 948 aa15.24■□□□□ 0.03
CCDC88C-204ENST00000389857 GPRASP1Q5JY77 1395 aa15.24■□□□□ 0.03
CCDC88C-204ENST00000389857 MYOM3Q5VTT5 1437 aa15.24■□□□□ 0.03
CCDC88C-204ENST00000389857 SKIDA1Q1XH10 827 aa15.23■□□□□ 0.03
CCDC88C-204ENST00000389857 CCDC158Q5M9N0 1113 aa15.23■□□□□ 0.03
CCDC88C-204ENST00000389857 KDM4AO75164 1064 aa15.23■□□□□ 0.03
CCDC88C-204ENST00000389857 CADPSQ9ULU8 1353 aa15.22■□□□□ 0.03
CCDC88C-204ENST00000389857 BRPF1P55201 1214 aaPredicted RBP15.22■□□□□ 0.03
CCDC88C-204ENST00000389857 ANKRD1Q15327 319 aa15.22■□□□□ 0.03
CCDC88C-204ENST00000389857 PLEKHO1Q53GL0 409 aaPredicted RBP15.21■□□□□ 0.03
CCDC88C-204ENST00000389857 AXDND1Q5T1B0 1012 aaPredicted RBP15.21■□□□□ 0.03
CCDC88C-204ENST00000389857 RRBP1Q9P2E9 1410 aaKnown RBP15.21■□□□□ 0.03
CCDC88C-204ENST00000389857 STK38Q15208 465 aa15.21■□□□□ 0.03
CCDC88C-204ENST00000389857 CNNM1Q9NRU3 951 aa15.21■□□□□ 0.03
CCDC88C-204ENST00000389857 CNTLNQ9NXG0 1405 aa15.21■□□□□ 0.03
CCDC88C-204ENST00000389857 SURF6O75683 361 aaKnown RBP15.21■□□□□ 0.02
CCDC88C-204ENST00000389857 AEBP1Q8IUX7 1158 aa15.2■□□□□ 0.02
CCDC88C-204ENST00000389857 TSPYL1Q9H0U9 437 aa15.2■□□□□ 0.02
CCDC88C-204ENST00000389857 RABEP1Q15276 862 aa15.2■□□□□ 0.02
CCDC88C-204ENST00000389857 PANK1Q8TE04 598 aa15.2■□□□□ 0.02
CCDC88C-204ENST00000389857 PDCL3Q9H2J4 239 aa15.2■□□□□ 0.02
CCDC88C-204ENST00000389857 CT47B1P0C2W7 299 aaPredicted RBP15.2■□□□□ 0.02
CCDC88C-204ENST00000389857 PPFIBP1Q86W92 1011 aa15.2■□□□□ 0.02
CCDC88C-204ENST00000389857 BCL11BQ9C0K0 894 aaPredicted RBP15.2■□□□□ 0.02
CCDC88C-204ENST00000389857 FYCO1Q9BQS8 1478 aa15.2■□□□□ 0.02
CCDC88C-204ENST00000389857 CAVIN1Q6NZI2 390 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-204ENST00000389857 TRIM22Q8IYM9 498 aa15.19■□□□□ 0.02
CCDC88C-204ENST00000389857 DEF6Q9H4E7 631 aa15.19■□□□□ 0.02
CCDC88C-204ENST00000389857 CCDC181Q5TID7 509 aa15.19■□□□□ 0.02
CCDC88C-204ENST00000389857 NACAP1Q9BZK3 213 aa15.19■□□□□ 0.02
CCDC88C-204ENST00000389857 GOLGA6L7A0A1B0GV03 622 aa15.19■□□□□ 0.02
CCDC88C-204ENST00000389857 DESP17661 470 aa15.19■□□□□ 0.02
CCDC88C-204ENST00000389857 SERPINC1P01008 464 aa15.19■□□□□ 0.02
CCDC88C-204ENST00000389857 GNAI2P04899 355 aa15.19■□□□□ 0.02
CCDC88C-204ENST00000389857 ATP2B1P20020 1258 aa15.19■□□□□ 0.02
CCDC88C-204ENST00000389857 CCDC69A6NI79 296 aa15.18■□□□□ 0.02
CCDC88C-204ENST00000389857 RNF214Q8ND24 703 aa15.18■□□□□ 0.02
CCDC88C-204ENST00000389857 GCC1Q96CN9 775 aa15.18■□□□□ 0.02
CCDC88C-204ENST00000389857 SCAPERQ9BY12 1400 aa15.18■□□□□ 0.02
CCDC88C-204ENST00000389857 ANKRD62A6NC57 917 aa15.18■□□□□ 0.02
CCDC88C-204ENST00000389857 TRAK2O60296 914 aa15.18■□□□□ 0.02
CCDC88C-204ENST00000389857 HMGN5P82970 282 aaKnown RBP15.18■□□□□ 0.02
CCDC88C-204ENST00000389857 ZSCAN25Q6NSZ9 544 aa15.18■□□□□ 0.02
CCDC88C-204ENST00000389857 NLRP6P59044 892 aa15.17■□□□□ 0.02
CCDC88C-204ENST00000389857 ENOX2Q16206 610 aaKnown RBP15.17■□□□□ 0.02
CCDC88C-204ENST00000389857 IQCEQ6IPM2 695 aa15.17■□□□□ 0.02
CCDC88C-204ENST00000389857 NFKBIBQ15653 356 aa15.17■□□□□ 0.02
CCDC88C-204ENST00000389857 BRD4O60885 1362 aaPredicted RBP15.17■□□□□ 0.02
CCDC88C-204ENST00000389857 CBFA2T2O43439 604 aa15.17■□□□□ 0.02
CCDC88C-204ENST00000389857 NEK4P51957 841 aa15.17■□□□□ 0.02
CCDC88C-204ENST00000389857 FMNL2Q96PY5 1086 aa15.17■□□□□ 0.02
CCDC88C-204ENST00000389857 KIAA0754O94854 1291 aa15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 ATP2B2Q01814 1243 aa15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 CCDC192P0DO97 292 aa15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 CCDC7Q96M83 1385 aa15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 GBP2P32456 591 aaPredicted RBP15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 SOGA3Q5TF21 947 aa15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 NUTM2GQ5VZR2 741 aa15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 ABTB2Q8N961 1025 aa15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 GGNBP2Q9H3C7 697 aa15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 CABP2Q9NPB3 220 aa15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 NOL7Q9UMY1 257 aaKnown RBP15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 CYP46A1Q9Y6A2 500 aa15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 RBM42Q9BTD8 480 aaKnown RBP15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 EZRP15311 586 aaKnown RBP15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 TANGO6Q9C0B7 1094 aa15.16■□□□□ 0.02
CCDC88C-204ENST00000389857 FAM177BA6PVY3 158 aa15.15■□□□□ 0.02
CCDC88C-204ENST00000389857 PRPF40AO75400 957 aaKnown RBP15.15■□□□□ 0.02
CCDC88C-204ENST00000389857 CYB5RLQ6IPT4 315 aa15.15■□□□□ 0.02
CCDC88C-204ENST00000389857 CCDC57Q2TAC2 916 aa15.14■□□□□ 0.01
CCDC88C-204ENST00000389857 CDKL5O76039 1030 aa15.14■□□□□ 0.01
CCDC88C-204ENST00000389857 EIF3JO75822 258 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-204ENST00000389857 ERLIN1O75477 346 aa15.14■□□□□ 0.01
CCDC88C-204ENST00000389857 TRIM21P19474 475 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-204ENST00000389857 TATP17735 454 aaPredicted RBP15.14■□□□□ 0.01
CCDC88C-204ENST00000389857 CCT4P50991 539 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-204ENST00000389857 CEBPZQ03701 1054 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-204ENST00000389857 TNMDQ9H2S6 317 aa15.14■□□□□ 0.01
CCDC88C-204ENST00000389857 ZHX3Q9H4I2 956 aa15.14■□□□□ 0.01
CCDC88C-204ENST00000389857 ARHGAP5Q13017 1502 aa15.13■□□□□ 0.01
CCDC88C-204ENST00000389857 FANCD2Q9BXW9 1451 aa15.13■□□□□ 0.01
CCDC88C-204ENST00000389857 PNISRQ8TF01 805 aaKnown RBP15.13■□□□□ 0.01
CCDC88C-204ENST00000389857 PLCD4Q9BRC7 762 aa15.13■□□□□ 0.01
CCDC88C-204ENST00000389857 FIBPO43427 364 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms