RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 CADPS2Q86UW7 1296 aa28.28■■■□□ 2.12
TRIM54-202ENST00000380075 EXOC6Q8TAG9 804 aa28.28■■■□□ 2.12
TRIM54-202ENST00000380075 UBAP1LF5GYI3 381 aa28.26■■■□□ 2.11
TRIM54-202ENST00000380075 SLFN5Q08AF3 891 aa28.26■■■□□ 2.11
TRIM54-202ENST00000380075 DCCP43146 1447 aa28.26■■■□□ 2.11
TRIM54-202ENST00000380075 NUTM2FA1L443 756 aa28.26■■■□□ 2.11
TRIM54-202ENST00000380075 TRMT2AQ8IZ69 625 aaKnown RBP28.26■■■□□ 2.11
TRIM54-202ENST00000380075 WASLO00401 505 aaPredicted RBP28.25■■■□□ 2.11
TRIM54-202ENST00000380075 SHPRHQ149N8 1683 aa28.25■■■□□ 2.11
TRIM54-202ENST00000380075 APAF1O14727 1248 aa28.24■■■□□ 2.11
TRIM54-202ENST00000380075 TOM1O60784 492 aa28.24■■■□□ 2.11
TRIM54-202ENST00000380075 CCDC146Q8IYE0 955 aa28.24■■■□□ 2.11
TRIM54-202ENST00000380075 CABP2Q9NPB3 220 aa28.23■■■□□ 2.11
TRIM54-202ENST00000380075 SLAIN2Q9P270 581 aa28.23■■■□□ 2.11
TRIM54-202ENST00000380075 CDC42BPGQ6DT37 1551 aa28.23■■■□□ 2.11
TRIM54-202ENST00000380075 CFAP53Q96M91 514 aa28.22■■■□□ 2.11
TRIM54-202ENST00000380075 CDK19Q9BWU1 502 aa28.22■■■□□ 2.11
TRIM54-202ENST00000380075 ADGRB2O60241 1585 aa28.22■■■□□ 2.11
TRIM54-202ENST00000380075 E9PSI1 815 aa28.2■■■□□ 2.11
TRIM54-202ENST00000380075 SRPK2P78362 688 aaKnown RBP28.2■■■□□ 2.1
TRIM54-202ENST00000380075 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.2■■■□□ 2.1
TRIM54-202ENST00000380075 MST1RQ04912 1400 aa28.19■■■□□ 2.1
TRIM54-202ENST00000380075 PIP4K2BP78356 416 aa28.18■■■□□ 2.1
TRIM54-202ENST00000380075 A0A1W2PP64 1363 aa28.18■■■□□ 2.1
TRIM54-202ENST00000380075 TERF2IPQ9NYB0 399 aa28.17■■■□□ 2.1
TRIM54-202ENST00000380075 NCBP3Q53F19 620 aaKnown RBP28.16■■■□□ 2.1
TRIM54-202ENST00000380075 RUNDC1Q96C34 613 aa28.15■■■□□ 2.1
TRIM54-202ENST00000380075 C1orf167Q5SNV9 1468 aa28.15■■■□□ 2.1
TRIM54-202ENST00000380075 PRR36Q9H6K5 1346 aa28.15■■■□□ 2.1
TRIM54-202ENST00000380075 MTHFSP49914 203 aa28.15■■■□□ 2.1
TRIM54-202ENST00000380075 ORAI2Q96SN7 254 aa28.13■■■□□ 2.09
TRIM54-202ENST00000380075 FMN2Q9NZ56 1722 aa28.13■■■□□ 2.09
TRIM54-202ENST00000380075 PLIN1O60240 522 aa28.13■■■□□ 2.09
TRIM54-202ENST00000380075 TNNT2P45379 298 aaPredicted RBP28.12■■■□□ 2.09
TRIM54-202ENST00000380075 NUDT16Q96DE0 195 aaKnown RBP28.12■■■□□ 2.09
TRIM54-202ENST00000380075 CRBNQ96SW2 442 aa28.11■■■□□ 2.09
TRIM54-202ENST00000380075 ANKRD26Q9UPS8 1709 aa28.11■■■□□ 2.09
TRIM54-202ENST00000380075 ESCO1Q5FWF5 840 aa28.11■■■□□ 2.09
TRIM54-202ENST00000380075 CD163L1Q9NR16 1453 aa28.1■■■□□ 2.09
TRIM54-202ENST00000380075 BRINP3Q76B58 766 aa28.1■■■□□ 2.09
TRIM54-202ENST00000380075 ANKARQ7Z5J8 1434 aa28.08■■■□□ 2.09
TRIM54-202ENST00000380075 HDGFL2Q7Z4V5 671 aaPredicted RBP28.08■■■□□ 2.09
TRIM54-202ENST00000380075 WWC1Q8IX03 1113 aa28.08■■■□□ 2.09
TRIM54-202ENST00000380075 ATP7BP35670 1465 aa28.07■■■□□ 2.08
TRIM54-202ENST00000380075 TCERG1O14776 1098 aaKnown RBP28.06■■■□□ 2.08
TRIM54-202ENST00000380075 CCDC27Q2M243 656 aa28.06■■■□□ 2.08
TRIM54-202ENST00000380075 ANP32EQ9BTT0 268 aa28.06■■■□□ 2.08
TRIM54-202ENST00000380075 PHF23Q9BUL5 403 aaPredicted RBP28.06■■■□□ 2.08
TRIM54-202ENST00000380075 SPINK5Q9NQ38 1064 aaPredicted RBP28.06■■■□□ 2.08
TRIM54-202ENST00000380075 CCDC61Q9Y6R9 512 aa28.06■■■□□ 2.08
TRIM54-202ENST00000380075 PMFBP1Q8TBY8 1022 aa28.04■■■□□ 2.08
TRIM54-202ENST00000380075 FBXO41Q8TF61 875 aa28.04■■■□□ 2.08
TRIM54-202ENST00000380075 WDR63Q8IWG1 891 aa28.03■■■□□ 2.08
TRIM54-202ENST00000380075 RGPD8O14715 1765 aaPredicted RBP28.03■■■□□ 2.08
TRIM54-202ENST00000380075 TCP11L2Q8N4U5 519 aa28.02■■■□□ 2.08
TRIM54-202ENST00000380075 PHF8Q9UPP1 1060 aa28.02■■■□□ 2.08
TRIM54-202ENST00000380075 DDX17Q92841 729 aaKnown RBP28.02■■■□□ 2.08
TRIM54-202ENST00000380075 ROBO1Q9Y6N7 1651 aa28.01■■■□□ 2.08
TRIM54-202ENST00000380075 CABP1Q9NZU7 370 aa28.01■■■□□ 2.07
TRIM54-202ENST00000380075 FYB1O15117 783 aa28■■■□□ 2.07
TRIM54-202ENST00000380075 FOXO3O43524 673 aa28■■■□□ 2.07
TRIM54-202ENST00000380075 MS4A1P11836 297 aa28■■■□□ 2.07
TRIM54-202ENST00000380075 C20orf194Q5TEA3 1177 aa28■■■□□ 2.07
TRIM54-202ENST00000380075 PPIP5K1Q6PFW1 1433 aa27.99■■■□□ 2.07
TRIM54-202ENST00000380075 COL3A1P02461 1466 aaPredicted RBP27.98■■■□□ 2.07
TRIM54-202ENST00000380075 GGNBP2Q9H3C7 697 aa27.98■■■□□ 2.07
TRIM54-202ENST00000380075 KIF20BQ96Q89 1820 aa27.97■■■□□ 2.07
TRIM54-202ENST00000380075 PLEKHG3A1L390 1219 aa27.97■■■□□ 2.07
TRIM54-202ENST00000380075 U2AF1L5P0DN76 240 aaPredicted RBP27.96■■■□□ 2.07
TRIM54-202ENST00000380075 U2AF1Q01081 240 aaKnown RBP eCLIP27.96■■■□□ 2.07
TRIM54-202ENST00000380075 NGDNQ8NEJ9 315 aaKnown RBP27.95■■■□□ 2.06
TRIM54-202ENST00000380075 MSH5O43196 834 aa27.94■■■□□ 2.06
TRIM54-202ENST00000380075 TOPAZ1Q8N9V7 1692 aa27.94■■■□□ 2.06
TRIM54-202ENST00000380075 ACEP12821 1306 aa27.94■■■□□ 2.06
TRIM54-202ENST00000380075 XPCQ01831 940 aaPredicted RBP27.93■■■□□ 2.06
TRIM54-202ENST00000380075 CENPQQ7L2Z9 268 aaPredicted RBP27.92■■■□□ 2.06
TRIM54-202ENST00000380075 PNPLA6Q8IY17 1366 aa27.92■■■□□ 2.06
TRIM54-202ENST00000380075 KDM2BQ8NHM5 1336 aa27.92■■■□□ 2.06
TRIM54-202ENST00000380075 PDE3AQ14432 1141 aa27.91■■■□□ 2.06
TRIM54-202ENST00000380075 NPHP3Q7Z494 1330 aa27.91■■■□□ 2.06
TRIM54-202ENST00000380075 ITSN1Q15811 1721 aa27.9■■■□□ 2.06
TRIM54-202ENST00000380075 HSPA1LP34931 641 aa27.9■■■□□ 2.06
TRIM54-202ENST00000380075 PSME1Q06323 249 aa27.9■■■□□ 2.06
TRIM54-202ENST00000380075 PNNQ9H307 717 aaKnown RBP27.9■■■□□ 2.06
TRIM54-202ENST00000380075 NEUROD2Q15784 382 aa27.89■■■□□ 2.06
TRIM54-202ENST00000380075 RRP7AQ9Y3A4 280 aaKnown RBP27.89■■■□□ 2.06
TRIM54-202ENST00000380075 KIF1AQ12756 1690 aa27.89■■■□□ 2.05
TRIM54-202ENST00000380075 BCAR3O75815 825 aa27.88■■■□□ 2.05
TRIM54-202ENST00000380075 KRT28Q7Z3Y7 464 aa27.88■■■□□ 2.05
TRIM54-202ENST00000380075 MYH16Q9H6N6 1097 aa27.88■■■□□ 2.05
TRIM54-202ENST00000380075 CPSF1Q10570 1443 aaKnown RBP27.88■■■□□ 2.05
TRIM54-202ENST00000380075 EDC4Q6P2E9 1401 aaKnown RBP27.88■■■□□ 2.05
TRIM54-202ENST00000380075 SOS2Q07890 1332 aaPredicted RBP27.86■■■□□ 2.05
TRIM54-202ENST00000380075 PLEKHF1Q96S99 279 aa27.86■■■□□ 2.05
TRIM54-202ENST00000380075 AHDC1Q5TGY3 1603 aaPredicted RBP27.85■■■□□ 2.05
TRIM54-202ENST00000380075 NHSL1Q5SYE7 1610 aa27.85■■■□□ 2.05
TRIM54-202ENST00000380075 DIAPH1O60610 1272 aaKnown RBP27.84■■■□□ 2.05
TRIM54-202ENST00000380075 ANP32AP39687 249 aaKnown RBP27.84■■■□□ 2.05
TRIM54-202ENST00000380075 PXDNQ92626 1479 aa27.83■■■□□ 2.05
TRIM54-202ENST00000380075 U2SURPO15042 1029 aaKnown RBP27.83■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms