RNA–Protein interactions for RNA: ENST00000372459.6

CTSA-203, Transcript of cathepsin A, humanhuman

TSL 1 (best) BASIC

Gene CTSA, Length 1,972 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-203ENST00000372459 TOPAZ1Q8N9V7 1692 aa32.92■■■□□ 2.86
CTSA-203ENST00000372459 COL3A1P02461 1466 aaPredicted RBP32.9■■■□□ 2.86
CTSA-203ENST00000372459 RRP1P56182 461 aaKnown RBP32.89■■■□□ 2.86
CTSA-203ENST00000372459 DUSP27Q5VZP5 1158 aa32.88■■■□□ 2.85
CTSA-203ENST00000372459 U2AF1L5P0DN76 240 aaPredicted RBP32.87■■■□□ 2.85
CTSA-203ENST00000372459 U2AF1Q01081 240 aaKnown RBP eCLIP32.87■■■□□ 2.85
CTSA-203ENST00000372459 PLEKHG3A1L390 1219 aa32.87■■■□□ 2.85
CTSA-203ENST00000372459 SLFN5Q08AF3 891 aa32.87■■■□□ 2.85
CTSA-203ENST00000372459 IQSEC2Q5JU85 1478 aa32.86■■■□□ 2.85
CTSA-203ENST00000372459 PNPLA6Q8IY17 1366 aa32.86■■■□□ 2.85
CTSA-203ENST00000372459 NME9Q86XW9 330 aa32.85■■■□□ 2.85
CTSA-203ENST00000372459 KCNA6P17658 529 aa32.83■■■□□ 2.85
CTSA-203ENST00000372459 TRMT2AQ8IZ69 625 aaKnown RBP32.82■■■□□ 2.84
CTSA-203ENST00000372459 TCP11L2Q8N4U5 519 aa32.82■■■□□ 2.84
CTSA-203ENST00000372459 ACEP12821 1306 aa32.81■■■□□ 2.84
CTSA-203ENST00000372459 NUTM2FA1L443 756 aa32.81■■■□□ 2.84
CTSA-203ENST00000372459 E9PSI1 815 aa32.81■■■□□ 2.84
CTSA-203ENST00000372459 COG3Q96JB2 828 aa32.81■■■□□ 2.84
CTSA-203ENST00000372459 POLKQ9UBT6 870 aa32.8■■■□□ 2.84
CTSA-203ENST00000372459 DIAPH1O60610 1272 aaKnown RBP32.79■■■□□ 2.84
CTSA-203ENST00000372459 WWC1Q8IX03 1113 aa32.79■■■□□ 2.84
CTSA-203ENST00000372459 NKTRP30414 1462 aaKnown RBP32.79■■■□□ 2.84
CTSA-203ENST00000372459 U2SURPO15042 1029 aaKnown RBP32.79■■■□□ 2.84
CTSA-203ENST00000372459 NCBP3Q53F19 620 aaKnown RBP32.79■■■□□ 2.84
CTSA-203ENST00000372459 NRKQ7Z2Y5 1582 aa32.79■■■□□ 2.84
CTSA-203ENST00000372459 AATKQ6ZMQ8 1374 aa32.79■■■□□ 2.84
CTSA-203ENST00000372459 MAP2P11137 1827 aaKnown RBP32.78■■■□□ 2.84
CTSA-203ENST00000372459 CHD2O14647 1828 aaKnown RBP32.77■■■□□ 2.84
CTSA-203ENST00000372459 USP6P35125 1406 aa32.76■■■□□ 2.83
CTSA-203ENST00000372459 TTC21BQ7Z4L5 1316 aa32.75■■■□□ 2.83
CTSA-203ENST00000372459 CCDC27Q2M243 656 aa32.75■■■□□ 2.83
CTSA-203ENST00000372459 ZRANB1Q9UGI0 708 aa32.75■■■□□ 2.83
CTSA-203ENST00000372459 SPINK5Q9NQ38 1064 aaPredicted RBP32.74■■■□□ 2.83
CTSA-203ENST00000372459 NEUROD2Q15784 382 aa32.74■■■□□ 2.83
CTSA-203ENST00000372459 PHF23Q9BUL5 403 aaPredicted RBP32.74■■■□□ 2.83
CTSA-203ENST00000372459 RRP7AQ9Y3A4 280 aaKnown RBP32.73■■■□□ 2.83
CTSA-203ENST00000372459 PPM1GO15355 546 aaPredicted RBP32.72■■■□□ 2.83
CTSA-203ENST00000372459 ANKARQ7Z5J8 1434 aa32.72■■■□□ 2.83
CTSA-203ENST00000372459 FBLN1P23142 703 aa32.72■■■□□ 2.83
CTSA-203ENST00000372459 B4GALNT3Q6L9W6 998 aa32.72■■■□□ 2.83
CTSA-203ENST00000372459 PNNQ9H307 717 aaKnown RBP32.72■■■□□ 2.83
CTSA-203ENST00000372459 NPHP4O75161 1426 aaPredicted RBP32.7■■■□□ 2.83
CTSA-203ENST00000372459 PLEKHF1Q96S99 279 aa32.7■■■□□ 2.83
CTSA-203ENST00000372459 WDR63Q8IWG1 891 aa32.7■■■□□ 2.82
CTSA-203ENST00000372459 DMRT2Q9Y5R5 561 aa32.7■■■□□ 2.82
CTSA-203ENST00000372459 CDK12Q9NYV4 1490 aaPredicted RBP32.7■■■□□ 2.82
CTSA-203ENST00000372459 EMILIN1Q9Y6C2 1016 aa32.68■■■□□ 2.82
CTSA-203ENST00000372459 MAPK8IP3Q9UPT6 1336 aa32.68■■■□□ 2.82
CTSA-203ENST00000372459 RGPD8O14715 1765 aaPredicted RBP32.67■■■□□ 2.82
CTSA-203ENST00000372459 FMN2Q9NZ56 1722 aa32.67■■■□□ 2.82
CTSA-203ENST00000372459 SSH2Q76I76 1423 aa32.66■■■□□ 2.82
CTSA-203ENST00000372459 PMFBP1Q8TBY8 1022 aa32.66■■■□□ 2.82
CTSA-203ENST00000372459 OVOS2A0A0J9YW53 1432 aa32.65■■■□□ 2.82
CTSA-203ENST00000372459 OVOS2Q6IE36 1432 aa32.65■■■□□ 2.82
CTSA-203ENST00000372459 TTC21AQ8NDW8 1320 aa32.64■■■□□ 2.82
CTSA-203ENST00000372459 NGDNQ8NEJ9 315 aaKnown RBP32.64■■■□□ 2.82
CTSA-203ENST00000372459 FCHSD2O94868 740 aa32.63■■■□□ 2.81
CTSA-203ENST00000372459 PLIN1O60240 522 aa32.61■■■□□ 2.81
CTSA-203ENST00000372459 CCDC136Q96JN2 1154 aa32.61■■■□□ 2.81
CTSA-203ENST00000372459 NALCNQ8IZF0 1738 aa32.61■■■□□ 2.81
CTSA-203ENST00000372459 TMPOP42166 694 aaKnown RBP32.6■■■□□ 2.81
CTSA-203ENST00000372459 RRS1Q15050 365 aaKnown RBP32.6■■■□□ 2.81
CTSA-203ENST00000372459 GOLGA6L2Q8N9W4 650 aaPredicted RBP32.59■■■□□ 2.81
CTSA-203ENST00000372459 EXOC6Q8TAG9 804 aa32.59■■■□□ 2.81
CTSA-203ENST00000372459 IL13P35225 146 aa32.58■■■□□ 2.81
CTSA-203ENST00000372459 LRRC7Q96NW7 1537 aa32.57■■■□□ 2.8
CTSA-203ENST00000372459 USP31Q70CQ4 1352 aa32.56■■■□□ 2.8
CTSA-203ENST00000372459 RSPH6AQ9H0K4 717 aa32.56■■■□□ 2.8
CTSA-203ENST00000372459 NEFMP07197 916 aa32.56■■■□□ 2.8
CTSA-203ENST00000372459 ADGRL3Q9HAR2 1447 aa32.54■■■□□ 2.8
CTSA-203ENST00000372459 MYH16Q9H6N6 1097 aa32.54■■■□□ 2.8
CTSA-203ENST00000372459 PRKAR2BP31323 418 aa32.52■■■□□ 2.8
CTSA-203ENST00000372459 TRIM35Q9UPQ4 493 aa32.5■■■□□ 2.79
CTSA-203ENST00000372459 NWD1Q149M9 1564 aa32.5■■■□□ 2.79
CTSA-203ENST00000372459 RIPK4P57078 832 aa32.5■■■□□ 2.79
CTSA-203ENST00000372459 CRBNQ96SW2 442 aa32.48■■■□□ 2.79
CTSA-203ENST00000372459 RBM19Q9Y4C8 960 aaKnown RBP32.48■■■□□ 2.79
CTSA-203ENST00000372459 HMOX1P09601 288 aa32.47■■■□□ 2.79
CTSA-203ENST00000372459 PIK3C2AO00443 1686 aa32.47■■■□□ 2.79
CTSA-203ENST00000372459 RBM33Q96EV2 1170 aaKnown RBP32.47■■■□□ 2.79
CTSA-203ENST00000372459 IL16Q14005 1332 aa32.46■■■□□ 2.79
CTSA-203ENST00000372459 PHF8Q9UPP1 1060 aa32.45■■■□□ 2.79
CTSA-203ENST00000372459 C20orf194Q5TEA3 1177 aa32.45■■■□□ 2.78
CTSA-203ENST00000372459 BCAR3O75815 825 aa32.44■■■□□ 2.78
CTSA-203ENST00000372459 C14orf37Q86TY3 774 aa32.42■■■□□ 2.78
CTSA-203ENST00000372459 PEAK1Q9H792 1746 aa32.42■■■□□ 2.78
CTSA-203ENST00000372459 EIF4A2Q14240 407 aaKnown RBP32.41■■■□□ 2.78
CTSA-203ENST00000372459 NFE2L2Q16236 605 aa32.41■■■□□ 2.78
CTSA-203ENST00000372459 NLRP6P59044 892 aa32.39■■■□□ 2.78
CTSA-203ENST00000372459 PHACTR3Q96KR7 559 aa32.39■■■□□ 2.78
CTSA-203ENST00000372459 USP54Q70EL1 1684 aa32.39■■■□□ 2.78
CTSA-203ENST00000372459 SOX12O15370 315 aa32.39■■■□□ 2.78
CTSA-203ENST00000372459 MAP3K19Q56UN5 1328 aa32.38■■■□□ 2.77
CTSA-203ENST00000372459 FANCIQ9NVI1 1328 aa32.38■■■□□ 2.77
CTSA-203ENST00000372459 CT47B1P0C2W7 299 aaPredicted RBP32.37■■■□□ 2.77
CTSA-203ENST00000372459 RARSP54136 660 aaKnown RBP32.37■■■□□ 2.77
CTSA-203ENST00000372459 SBNO1A3KN83 1393 aa32.37■■■□□ 2.77
CTSA-203ENST00000372459 HSP90AB2PQ58FF8 381 aa32.36■■■□□ 2.77
CTSA-203ENST00000372459 FLT4P35916 1363 aa32.36■■■□□ 2.77
CTSA-203ENST00000372459 ESCO1Q5FWF5 840 aa32.35■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms