RNA–Protein interactions for RNA: ENST00000368527.7

TPM3-209, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-209ENST00000368527 FAM161AQ3B820 660 aa13.16□□□□□ -0.3
TPM3-209ENST00000368527 NUTM2DQ5VT03 806 aaPredicted RBP13.16□□□□□ -0.3
TPM3-209ENST00000368527 ZNF428Q96B54 188 aa13.16□□□□□ -0.3
TPM3-209ENST00000368527 SPINK5Q9NQ38 1064 aaPredicted RBP13.16□□□□□ -0.3
TPM3-209ENST00000368527 SETD1AO15047 1707 aaKnown RBP13.16□□□□□ -0.3
TPM3-209ENST00000368527 DIAPH1O60610 1272 aaKnown RBP13.15□□□□□ -0.3
TPM3-209ENST00000368527 FCHSD2O94868 740 aa13.15□□□□□ -0.3
TPM3-209ENST00000368527 TNNT2P45379 298 aaPredicted RBP13.15□□□□□ -0.3
TPM3-209ENST00000368527 CLUAP1Q96AJ1 413 aa13.15□□□□□ -0.3
TPM3-209ENST00000368527 CPS1P31327 1500 aa13.13□□□□□ -0.31
TPM3-209ENST00000368527 AATKQ6ZMQ8 1374 aa13.13□□□□□ -0.31
TPM3-209ENST00000368527 TNRQ92752 1358 aa13.13□□□□□ -0.31
TPM3-209ENST00000368527 BCAR3O75815 825 aa13.13□□□□□ -0.31
TPM3-209ENST00000368527 CPSF1Q10570 1443 aaKnown RBP13.13□□□□□ -0.31
TPM3-209ENST00000368527 TSPOAP1O95153 1857 aa13.12□□□□□ -0.31
TPM3-209ENST00000368527 TMPOP42166 694 aaKnown RBP13.12□□□□□ -0.31
TPM3-209ENST00000368527 SAFB2Q14151 953 aaKnown RBP eCLIP13.12□□□□□ -0.31
TPM3-209ENST00000368527 PLEKHF1Q96S99 279 aa13.12□□□□□ -0.31
TPM3-209ENST00000368527 ZNF692Q9BU19 519 aaPredicted RBP13.12□□□□□ -0.31
TPM3-209ENST00000368527 CHMP4BQ9H444 224 aaKnown RBP13.12□□□□□ -0.31
TPM3-209ENST00000368527 WASLO00401 505 aaPredicted RBP13.11□□□□□ -0.31
TPM3-209ENST00000368527 PPM1GO15355 546 aaPredicted RBP13.11□□□□□ -0.31
TPM3-209ENST00000368527 GGNBP2Q9H3C7 697 aa13.11□□□□□ -0.31
TPM3-209ENST00000368527 CABP1Q9NZU7 370 aa13.11□□□□□ -0.31
TPM3-209ENST00000368527 USP35Q9P2H5 1018 aa13.11□□□□□ -0.31
TPM3-209ENST00000368527 U2SURPO15042 1029 aaKnown RBP13.1□□□□□ -0.31
TPM3-209ENST00000368527 IPO8O15397 1037 aaKnown RBP13.1□□□□□ -0.31
TPM3-209ENST00000368527 ZKSCAN2Q63HK3 967 aa13.1□□□□□ -0.31
TPM3-209ENST00000368527 RWDD1Q9H446 243 aaPredicted RBP13.1□□□□□ -0.31
TPM3-209ENST00000368527 DMRT2Q9Y5R5 561 aa13.1□□□□□ -0.31
TPM3-209ENST00000368527 KIF16BQ96L93 1317 aa13.1□□□□□ -0.31
TPM3-209ENST00000368527 CDK12Q9NYV4 1490 aaPredicted RBP13.1□□□□□ -0.31
TPM3-209ENST00000368527 NRXN3Q9Y4C0 1643 aa13.1□□□□□ -0.31
TPM3-209ENST00000368527 LMOD3Q0VAK6 560 aa13.09□□□□□ -0.31
TPM3-209ENST00000368527 NEUROD2Q15784 382 aa13.09□□□□□ -0.31
TPM3-209ENST00000368527 ALDH1L2Q3SY69 923 aa13.09□□□□□ -0.31
TPM3-209ENST00000368527 PPIP5K1Q6PFW1 1433 aa13.09□□□□□ -0.31
TPM3-209ENST00000368527 KIF13AQ9H1H9 1805 aa13.09□□□□□ -0.31
TPM3-209ENST00000368527 TMEM2Q9UHN6 1383 aa13.08□□□□□ -0.31
TPM3-209ENST00000368527 DAXXQ9UER7 740 aaPredicted RBP13.08□□□□□ -0.32
TPM3-209ENST00000368527 RRP7AQ9Y3A4 280 aaKnown RBP13.08□□□□□ -0.32
TPM3-209ENST00000368527 CCDC61Q9Y6R9 512 aa13.08□□□□□ -0.32
TPM3-209ENST00000368527 HAP1P54257 671 aaPredicted RBP13.07□□□□□ -0.32
TPM3-209ENST00000368527 BRPF1P55201 1214 aaPredicted RBP13.07□□□□□ -0.32
TPM3-209ENST00000368527 RTL5Q5HYW3 569 aaPredicted RBP13.07□□□□□ -0.32
TPM3-209ENST00000368527 PLEKHG1Q9ULL1 1385 aa13.07□□□□□ -0.32
TPM3-209ENST00000368527 MVPQ14764 893 aaKnown RBP13.06□□□□□ -0.32
TPM3-209ENST00000368527 FTSJ3Q8IY81 847 aaKnown RBP13.06□□□□□ -0.32
TPM3-209ENST00000368527 DZIP1LQ8IYY4 767 aaKnown RBP13.06□□□□□ -0.32
TPM3-209ENST00000368527 FRAT1Q92837 279 aaPredicted RBP13.06□□□□□ -0.32
TPM3-209ENST00000368527 DDX19BQ9UMR2 479 aa13.06□□□□□ -0.32
TPM3-209ENST00000368527 RIPK4P57078 832 aa13.05□□□□□ -0.32
TPM3-209ENST00000368527 COG3Q96JB2 828 aa13.05□□□□□ -0.32
TPM3-209ENST00000368527 TRIM35Q9UPQ4 493 aa13.05□□□□□ -0.32
TPM3-209ENST00000368527 COG6Q9Y2V7 657 aa13.05□□□□□ -0.32
TPM3-209ENST00000368527 MON2Q7Z3U7 1717 aa13.05□□□□□ -0.32
TPM3-209ENST00000368527 UBR1Q8IWV7 1749 aa13.05□□□□□ -0.32
TPM3-209ENST00000368527 NFE2L2Q16236 605 aa13.04□□□□□ -0.32
TPM3-209ENST00000368527 NPM2Q86SE8 214 aaKnown RBP13.04□□□□□ -0.32
TPM3-209ENST00000368527 PANK1Q8TE04 598 aa13.04□□□□□ -0.32
TPM3-209ENST00000368527 NUDT16Q96DE0 195 aaKnown RBP13.04□□□□□ -0.32
TPM3-209ENST00000368527 POLKQ9UBT6 870 aa13.04□□□□□ -0.32
TPM3-209ENST00000368527 C8orf34Q49A92 452 aa13.03□□□□□ -0.32
TPM3-209ENST00000368527 RSPH6AQ9H0K4 717 aa13.03□□□□□ -0.32
TPM3-209ENST00000368527 SMC4Q9NTJ3 1288 aa13.03□□□□□ -0.32
TPM3-209ENST00000368527 METP08581 1390 aa13.03□□□□□ -0.32
TPM3-209ENST00000368527 LRRC7Q96NW7 1537 aa13.03□□□□□ -0.32
TPM3-209ENST00000368527 DIP2AQ14689 1571 aa13.03□□□□□ -0.32
TPM3-209ENST00000368527 ITSN1Q15811 1721 aa13.02□□□□□ -0.32
TPM3-209ENST00000368527 PAK3O75914 559 aaPredicted RBP13.02□□□□□ -0.33
TPM3-209ENST00000368527 GNAI1P63096 354 aa13.02□□□□□ -0.33
TPM3-209ENST00000368527 HDAC1Q13547 482 aaPredicted RBP13.02□□□□□ -0.33
TPM3-209ENST00000368527 MLECQ14165 292 aa13.02□□□□□ -0.33
TPM3-209ENST00000368527 ATF7IPQ6VMQ6 1270 aa13.02□□□□□ -0.33
TPM3-209ENST00000368527 WAPLQ7Z5K2 1190 aa13.02□□□□□ -0.33
TPM3-209ENST00000368527 ARHGAP45Q92619 1136 aa13.02□□□□□ -0.33
TPM3-209ENST00000368527 UPF2Q9HAU5 1272 aaKnown RBP13.02□□□□□ -0.33
TPM3-209ENST00000368527 EID1Q9Y6B2 187 aa13.02□□□□□ -0.33
TPM3-209ENST00000368527 AKAP12Q02952 1782 aa13.02□□□□□ -0.33
TPM3-209ENST00000368527 EIF5BO60841 1220 aaKnown RBP13.01□□□□□ -0.33
TPM3-209ENST00000368527 EXOSC9Q06265 439 aaKnown RBP13.01□□□□□ -0.33
TPM3-209ENST00000368527 IFT57Q9NWB7 429 aa13.01□□□□□ -0.33
TPM3-209ENST00000368527 VIRMAQ69YN4 1812 aaKnown RBP13.01□□□□□ -0.33
TPM3-209ENST00000368527 C3P01024 1663 aa13□□□□□ -0.33
TPM3-209ENST00000368527 SLIT1O75093 1534 aa13□□□□□ -0.33
TPM3-209ENST00000368527 PLEKHG3A1L390 1219 aa13□□□□□ -0.33
TPM3-209ENST00000368527 IGHDP01880 384 aa13□□□□□ -0.33
TPM3-209ENST00000368527 ADAMTS13Q76LX8 1427 aa12.99□□□□□ -0.33
TPM3-209ENST00000368527 PRKAR2BP31323 418 aa12.99□□□□□ -0.33
TPM3-209ENST00000368527 IL13P35225 146 aa12.99□□□□□ -0.33
TPM3-209ENST00000368527 RGS3P49796 1198 aa12.99□□□□□ -0.33
TPM3-209ENST00000368527 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.99□□□□□ -0.33
TPM3-209ENST00000368527 NRKQ7Z2Y5 1582 aa12.98□□□□□ -0.33
TPM3-209ENST00000368527 ARHGAP23Q9P227 1491 aa12.98□□□□□ -0.33
TPM3-209ENST00000368527 PTCH1Q13635 1447 aa12.98□□□□□ -0.33
TPM3-209ENST00000368527 KIF24Q5T7B8 1368 aa12.98□□□□□ -0.33
TPM3-209ENST00000368527 TTC21AQ8NDW8 1320 aa12.98□□□□□ -0.33
TPM3-209ENST00000368527 BECN1Q14457 450 aa12.98□□□□□ -0.33
TPM3-209ENST00000368527 TXNDC2Q86VQ3 553 aa12.98□□□□□ -0.33
TPM3-209ENST00000368527 TBX22Q9Y458 520 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms