RNA–Protein interactions for RNA: ENST00000361804.4

SMC3-201, Transcript of structural maintenance of chromosomes 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC3, Length 4,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3-201ENST00000361804 MORC1Q86VD1 984 aa13.66□□□□□ -0.22
SMC3-201ENST00000361804 TCP11L2Q8N4U5 519 aa13.65□□□□□ -0.22
SMC3-201ENST00000361804 CPS1P31327 1500 aa13.64□□□□□ -0.23
SMC3-201ENST00000361804 ABCC11Q96J66 1382 aa13.64□□□□□ -0.23
SMC3-201ENST00000361804 NALCNQ8IZF0 1738 aa13.64□□□□□ -0.23
SMC3-201ENST00000361804 ANKRD36BQ8N2N9 1353 aa13.64□□□□□ -0.23
SMC3-201ENST00000361804 MTHFSP49914 203 aa13.63□□□□□ -0.23
SMC3-201ENST00000361804 METP08581 1390 aa13.63□□□□□ -0.23
SMC3-201ENST00000361804 PEAK1Q9H792 1746 aa13.63□□□□□ -0.23
SMC3-201ENST00000361804 TSR2Q969E8 191 aaKnown RBP13.62□□□□□ -0.23
SMC3-201ENST00000361804 POGKQ9P215 609 aa13.62□□□□□ -0.23
SMC3-201ENST00000361804 RARSP54136 660 aaKnown RBP13.62□□□□□ -0.23
SMC3-201ENST00000361804 CABP2Q9NPB3 220 aa13.61□□□□□ -0.23
SMC3-201ENST00000361804 RGPD1P0DJD0 1748 aa13.6□□□□□ -0.23
SMC3-201ENST00000361804 ADAMTS13Q76LX8 1427 aa13.59□□□□□ -0.23
SMC3-201ENST00000361804 PDZRN3Q9UPQ7 1066 aa13.59□□□□□ -0.23
SMC3-201ENST00000361804 SLC52A1Q9NWF4 448 aa13.58□□□□□ -0.23
SMC3-201ENST00000361804 TECPR2O15040 1411 aa13.58□□□□□ -0.23
SMC3-201ENST00000361804 CPSF1Q10570 1443 aaKnown RBP13.58□□□□□ -0.23
SMC3-201ENST00000361804 CGNL1Q0VF96 1302 aa13.58□□□□□ -0.23
SMC3-201ENST00000361804 U2AF1L5P0DN76 240 aaPredicted RBP13.58□□□□□ -0.24
SMC3-201ENST00000361804 U2AF1Q01081 240 aaKnown RBP eCLIP13.58□□□□□ -0.24
SMC3-201ENST00000361804 PLEKHF1Q96S99 279 aa13.58□□□□□ -0.24
SMC3-201ENST00000361804 PNPLA6Q8IY17 1366 aa13.58□□□□□ -0.24
SMC3-201ENST00000361804 LRRC7Q96NW7 1537 aa13.58□□□□□ -0.24
SMC3-201ENST00000361804 PDE3AQ14432 1141 aa13.58□□□□□ -0.24
SMC3-201ENST00000361804 ITSN1Q15811 1721 aa13.57□□□□□ -0.24
SMC3-201ENST00000361804 RUNDC1Q96C34 613 aa13.57□□□□□ -0.24
SMC3-201ENST00000361804 STK26Q9P289 416 aa13.57□□□□□ -0.24
SMC3-201ENST00000361804 PTPRUQ92729 1446 aa13.57□□□□□ -0.24
SMC3-201ENST00000361804 PUS7Q96PZ0 661 aaKnown RBP13.57□□□□□ -0.24
SMC3-201ENST00000361804 RIMS2Q9UQ26 1411 aa13.56□□□□□ -0.24
SMC3-201ENST00000361804 FBLN1P23142 703 aa13.56□□□□□ -0.24
SMC3-201ENST00000361804 ATP7BP35670 1465 aa13.55□□□□□ -0.24
SMC3-201ENST00000361804 U2SURPO15042 1029 aaKnown RBP13.55□□□□□ -0.24
SMC3-201ENST00000361804 NCKAP5LQ9HCH0 1330 aa13.55□□□□□ -0.24
SMC3-201ENST00000361804 FER1L4A9Z1Z3 1794 aa13.55□□□□□ -0.24
SMC3-201ENST00000361804 ZMYM3Q14202 1370 aa13.55□□□□□ -0.24
SMC3-201ENST00000361804 PRAM1Q96QH2 718 aa13.54□□□□□ -0.24
SMC3-201ENST00000361804 GGNBP2Q9H3C7 697 aa13.54□□□□□ -0.24
SMC3-201ENST00000361804 XRN1Q8IZH2 1706 aaKnown RBP13.54□□□□□ -0.24
SMC3-201ENST00000361804 FYB1O15117 783 aa13.54□□□□□ -0.24
SMC3-201ENST00000361804 RIMS1Q86UR5 1692 aaKnown RBP13.54□□□□□ -0.24
SMC3-201ENST00000361804 VGFO15240 615 aaPredicted RBP13.54□□□□□ -0.24
SMC3-201ENST00000361804 WAPLQ7Z5K2 1190 aa13.53□□□□□ -0.24
SMC3-201ENST00000361804 TBC1D2Q9BYX2 928 aa13.52□□□□□ -0.24
SMC3-201ENST00000361804 GZF1Q9H116 711 aaPredicted RBP13.52□□□□□ -0.24
SMC3-201ENST00000361804 MFAP1P55081 439 aaKnown RBP13.52□□□□□ -0.25
SMC3-201ENST00000361804 EXOSC9Q06265 439 aaKnown RBP13.52□□□□□ -0.25
SMC3-201ENST00000361804 FMN2Q9NZ56 1722 aa13.51□□□□□ -0.25
SMC3-201ENST00000361804 MAPK8IP3Q9UPT6 1336 aa13.51□□□□□ -0.25
SMC3-201ENST00000361804 FTSJ3Q8IY81 847 aaKnown RBP13.5□□□□□ -0.25
SMC3-201ENST00000361804 PRR36Q9H6K5 1346 aa13.5□□□□□ -0.25
SMC3-201ENST00000361804 ROBO2Q9HCK4 1378 aa13.5□□□□□ -0.25
SMC3-201ENST00000361804 SMC4Q9NTJ3 1288 aa13.5□□□□□ -0.25
SMC3-201ENST00000361804 ARHGAP23Q9P227 1491 aa13.5□□□□□ -0.25
SMC3-201ENST00000361804 USP54Q70EL1 1684 aa13.5□□□□□ -0.25
SMC3-201ENST00000361804 SLIT1O75093 1534 aa13.5□□□□□ -0.25
SMC3-201ENST00000361804 ITPRIPQ8IWB1 547 aa13.49□□□□□ -0.25
SMC3-201ENST00000361804 PIK3C2AO00443 1686 aa13.49□□□□□ -0.25
SMC3-201ENST00000361804 TRIM35Q9UPQ4 493 aa13.49□□□□□ -0.25
SMC3-201ENST00000361804 EIF5BO60841 1220 aaKnown RBP13.48□□□□□ -0.25
SMC3-201ENST00000361804 SSH1Q8WYL5 1049 aa13.48□□□□□ -0.25
SMC3-201ENST00000361804 TBC1D32Q96NH3 1257 aa13.48□□□□□ -0.25
SMC3-201ENST00000361804 ANTXR1Q9H6X2 564 aa13.48□□□□□ -0.25
SMC3-201ENST00000361804 MINK1Q8N4C8 1332 aaPredicted RBP13.48□□□□□ -0.25
SMC3-201ENST00000361804 TRIM27P14373 513 aa13.48□□□□□ -0.25
SMC3-201ENST00000361804 MVPQ14764 893 aaKnown RBP13.48□□□□□ -0.25
SMC3-201ENST00000361804 PMFBP1Q8TBY8 1022 aa13.48□□□□□ -0.25
SMC3-201ENST00000361804 NSD2O96028 1365 aa13.48□□□□□ -0.25
SMC3-201ENST00000361804 SSH2Q76I76 1423 aa13.48□□□□□ -0.25
SMC3-201ENST00000361804 ZRANB1Q9UGI0 708 aa13.47□□□□□ -0.25
SMC3-201ENST00000361804 EVC2Q86UK5 1308 aa13.47□□□□□ -0.25
SMC3-201ENST00000361804 SRPK2P78362 688 aaKnown RBP13.47□□□□□ -0.25
SMC3-201ENST00000361804 CFAP53Q96M91 514 aa13.47□□□□□ -0.25
SMC3-201ENST00000361804 DZIP1LQ8IYY4 767 aaKnown RBP13.47□□□□□ -0.25
SMC3-201ENST00000361804 LTKP29376 864 aa13.46□□□□□ -0.25
SMC3-201ENST00000361804 BECN1Q14457 450 aa13.46□□□□□ -0.25
SMC3-201ENST00000361804 WDR63Q8IWG1 891 aa13.46□□□□□ -0.25
SMC3-201ENST00000361804 ZKSCAN2Q63HK3 967 aa13.46□□□□□ -0.26
SMC3-201ENST00000361804 NOB1Q9ULX3 412 aaKnown RBP13.46□□□□□ -0.26
SMC3-201ENST00000361804 FAM135BQ49AJ0 1406 aa13.46□□□□□ -0.26
SMC3-201ENST00000361804 CDK19Q9BWU1 502 aa13.45□□□□□ -0.26
SMC3-201ENST00000361804 RWDD1Q9H446 243 aaPredicted RBP13.45□□□□□ -0.26
SMC3-201ENST00000361804 THUMPD2Q9BTF0 503 aaKnown RBP13.45□□□□□ -0.26
SMC3-201ENST00000361804 NINLQ9Y2I6 1382 aa13.45□□□□□ -0.26
SMC3-201ENST00000361804 TMEM57Q8N5G2 664 aa13.45□□□□□ -0.26
SMC3-201ENST00000361804 UPF2Q9HAU5 1272 aaKnown RBP13.45□□□□□ -0.26
SMC3-201ENST00000361804 PRKCSHP14314 528 aaPredicted RBP13.44□□□□□ -0.26
SMC3-201ENST00000361804 C1orf115Q9H7X2 142 aa13.44□□□□□ -0.26
SMC3-201ENST00000361804 PPP6R1Q9UPN7 881 aa13.44□□□□□ -0.26
SMC3-201ENST00000361804 TMEM2Q9UHN6 1383 aa13.44□□□□□ -0.26
SMC3-201ENST00000361804 MYH16Q9H6N6 1097 aa13.44□□□□□ -0.26
SMC3-201ENST00000361804 TMPOP42166 694 aaKnown RBP13.44□□□□□ -0.26
SMC3-201ENST00000361804 CABP1Q9NZU7 370 aa13.44□□□□□ -0.26
SMC3-201ENST00000361804 ELL2O00472 640 aaPredicted RBP13.43□□□□□ -0.26
SMC3-201ENST00000361804 PANK2Q9BZ23 570 aa13.43□□□□□ -0.26
SMC3-201ENST00000361804 LNPKQ9C0E8 428 aa13.43□□□□□ -0.26
SMC3-201ENST00000361804 FOXD4L1Q9NU39 408 aa13.43□□□□□ -0.26
SMC3-201ENST00000361804 CHD2O14647 1828 aaKnown RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms