RNA–Protein interactions for RNA: ENST00000361138.6

SMC5-201, Transcript of structural maintenance of chromosomes 5, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC5, Length 5,980 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-201ENST00000361138 LTV1Q96GA3 475 aaPredicted RBP16.76■□□□□ 0.27
SMC5-201ENST00000361138 RASSF8Q8NHQ8 419 aa16.76■□□□□ 0.27
SMC5-201ENST00000361138 TSPYL4Q9UJ04 414 aa16.76■□□□□ 0.27
SMC5-201ENST00000361138 TWISTNBQ3B726 338 aaPredicted RBP16.76■□□□□ 0.27
SMC5-201ENST00000361138 C8orf34Q49A92 452 aa16.76■□□□□ 0.27
SMC5-201ENST00000361138 CFAP70Q5T0N1 1121 aa16.76■□□□□ 0.27
SMC5-201ENST00000361138 RARSP54136 660 aaKnown RBP16.76■□□□□ 0.27
SMC5-201ENST00000361138 TAF7LQ5H9L4 462 aa16.76■□□□□ 0.27
SMC5-201ENST00000361138 C9orf78Q9NZ63 289 aaPredicted RBP16.76■□□□□ 0.27
SMC5-201ENST00000361138 PSMA5P28066 241 aa16.75■□□□□ 0.27
SMC5-201ENST00000361138 NGDNQ8NEJ9 315 aaKnown RBP16.75■□□□□ 0.27
SMC5-201ENST00000361138 XPCQ01831 940 aaPredicted RBP16.75■□□□□ 0.27
SMC5-201ENST00000361138 CCDC112Q8NEF3 446 aa16.75■□□□□ 0.27
SMC5-201ENST00000361138 PRDM10Q9NQV6 1147 aa16.75■□□□□ 0.27
SMC5-201ENST00000361138 EPRSP07814 1512 aaKnown RBP16.75■□□□□ 0.27
SMC5-201ENST00000361138 CDK13Q14004 1512 aaKnown RBP16.75■□□□□ 0.27
SMC5-201ENST00000361138 IGHDP01880 384 aa16.75■□□□□ 0.27
SMC5-201ENST00000361138 PDCL2Q8N4E4 241 aa16.75■□□□□ 0.27
SMC5-201ENST00000361138 CCDC9Q9Y3X0 531 aaKnown RBP16.74■□□□□ 0.27
SMC5-201ENST00000361138 XRCC6P12956 609 aaKnown RBP eCLIP16.74■□□□□ 0.27
SMC5-201ENST00000361138 ACBD3Q9H3P7 528 aa16.74■□□□□ 0.27
SMC5-201ENST00000361138 PES1O00541 588 aaKnown RBP16.74■□□□□ 0.27
SMC5-201ENST00000361138 EIF2S2P20042 333 aaKnown RBP16.74■□□□□ 0.27
SMC5-201ENST00000361138 FOSBP53539 338 aa16.74■□□□□ 0.27
SMC5-201ENST00000361138 TAF3Q5VWG9 929 aa16.74■□□□□ 0.27
SMC5-201ENST00000361138 HOOK1Q9UJC3 728 aaKnown RBP16.74■□□□□ 0.27
SMC5-201ENST00000361138 SSFA2P28290 1259 aa16.73■□□□□ 0.27
SMC5-201ENST00000361138 TMEM57Q8N5G2 664 aa16.73■□□□□ 0.27
SMC5-201ENST00000361138 PRKAR2BP31323 418 aa16.73■□□□□ 0.27
SMC5-201ENST00000361138 TROQ12816 1431 aaPredicted RBP16.73■□□□□ 0.27
SMC5-201ENST00000361138 CCP110O43303 1012 aa16.73■□□□□ 0.27
SMC5-201ENST00000361138 AEBP1Q8IUX7 1158 aa16.72■□□□□ 0.27
SMC5-201ENST00000361138 BIVM-ERCC5R4GMW8 1640 aa16.72■□□□□ 0.27
SMC5-201ENST00000361138 UBTFL1P0CB47 393 aaPredicted RBP16.72■□□□□ 0.27
SMC5-201ENST00000361138 ABCC5O15440 1437 aa16.72■□□□□ 0.27
SMC5-201ENST00000361138 TRIM29Q14134 588 aa16.71■□□□□ 0.27
SMC5-201ENST00000361138 CBX1P83916 185 aa16.71■□□□□ 0.27
SMC5-201ENST00000361138 G3BP1Q13283 466 aaKnown RBP eCLIP16.71■□□□□ 0.27
SMC5-201ENST00000361138 TMEM132EQ6IEE7 984 aa16.71■□□□□ 0.27
SMC5-201ENST00000361138 HSP90B2PQ58FF3 399 aa16.7■□□□□ 0.26
SMC5-201ENST00000361138 TNMDQ9H2S6 317 aa16.7■□□□□ 0.26
SMC5-201ENST00000361138 CPLX1O14810 134 aa16.7■□□□□ 0.26
SMC5-201ENST00000361138 SMC2O95347 1197 aa16.7■□□□□ 0.26
SMC5-201ENST00000361138 PDCP20941 246 aa16.7■□□□□ 0.26
SMC5-201ENST00000361138 TOMM22Q9NS69 142 aa16.7■□□□□ 0.26
SMC5-201ENST00000361138 NUTM2FA1L443 756 aa16.7■□□□□ 0.26
SMC5-201ENST00000361138 GNAI3P08754 354 aa16.7■□□□□ 0.26
SMC5-201ENST00000361138 ZNF330Q9Y3S2 320 aaPredicted RBP16.7■□□□□ 0.26
SMC5-201ENST00000361138 MCM5P33992 734 aa16.69■□□□□ 0.26
SMC5-201ENST00000361138 CAMSAP2Q08AD1 1489 aa16.69■□□□□ 0.26
SMC5-201ENST00000361138 SLC12A5Q9H2X9 1139 aa16.69■□□□□ 0.26
SMC5-201ENST00000361138 GNAI2P04899 355 aa16.68■□□□□ 0.26
SMC5-201ENST00000361138 CUL7Q14999 1698 aa16.68■□□□□ 0.26
SMC5-201ENST00000361138 LRRFIP1Q32MZ4 808 aaKnown RBP16.68■□□□□ 0.26
SMC5-201ENST00000361138 CPLX2Q6PUV4 134 aaKnown RBP16.68■□□□□ 0.26
SMC5-201ENST00000361138 OLFM4Q6UX06 510 aa16.68■□□□□ 0.26
SMC5-201ENST00000361138 NPHP1O15259 732 aa16.68■□□□□ 0.26
SMC5-201ENST00000361138 DYNC1I1O14576 645 aa16.68■□□□□ 0.26
SMC5-201ENST00000361138 SDF4Q9BRK5 362 aa16.68■□□□□ 0.26
SMC5-201ENST00000361138 PANK2Q9BZ23 570 aa16.68■□□□□ 0.26
SMC5-201ENST00000361138 KINO60870 393 aaKnown RBP16.67■□□□□ 0.26
SMC5-201ENST00000361138 AK7Q96M32 723 aa16.67■□□□□ 0.26
SMC5-201ENST00000361138 LRRCC1Q9C099 1032 aa16.67■□□□□ 0.26
SMC5-201ENST00000361138 CSB-PGBD3P0DP91 1061 aa16.67■□□□□ 0.26
SMC5-201ENST00000361138 SYNE3Q6ZMZ3 975 aa16.67■□□□□ 0.26
SMC5-201ENST00000361138 PDILTQ8N807 584 aa16.67■□□□□ 0.26
SMC5-201ENST00000361138 ANKRD20A12PQ8NF67 263 aa16.67■□□□□ 0.26
SMC5-201ENST00000361138 NEXNQ0ZGT2 675 aa16.66■□□□□ 0.26
SMC5-201ENST00000361138 C1orf141Q5JVX7 400 aa16.66■□□□□ 0.26
SMC5-201ENST00000361138 GPRASP1Q5JY77 1395 aa16.66■□□□□ 0.26
SMC5-201ENST00000361138 NSD3Q9BZ95 1437 aa16.66■□□□□ 0.26
SMC5-201ENST00000361138 PEG3Q9GZU2 1588 aa16.66■□□□□ 0.26
SMC5-201ENST00000361138 TEFQ10587 303 aa16.66■□□□□ 0.26
SMC5-201ENST00000361138 LEKR1Q6ZMV7 388 aa16.65■□□□□ 0.26
SMC5-201ENST00000361138 KRT85P78386 507 aa16.65■□□□□ 0.26
SMC5-201ENST00000361138 KLHL40Q2TBA0 621 aa16.65■□□□□ 0.26
SMC5-201ENST00000361138 CYP46A1Q9Y6A2 500 aa16.65■□□□□ 0.26
SMC5-201ENST00000361138 IPO7O95373 1038 aaKnown RBP16.65■□□□□ 0.26
SMC5-201ENST00000361138 AKAP17AQ02040 695 aaKnown RBP16.65■□□□□ 0.26
SMC5-201ENST00000361138 SURF6O75683 361 aaKnown RBP16.64■□□□□ 0.26
SMC5-201ENST00000361138 DHX8Q14562 1220 aaKnown RBP16.64■□□□□ 0.26
SMC5-201ENST00000361138 ZNF428Q96B54 188 aa16.64■□□□□ 0.26
SMC5-201ENST00000361138 CCDC183Q5T5S1 534 aa16.64■□□□□ 0.25
SMC5-201ENST00000361138 CCDC30Q5VVM6 783 aa16.64■□□□□ 0.25
SMC5-201ENST00000361138 ERCC4Q92889 916 aaPredicted RBP16.64■□□□□ 0.25
SMC5-201ENST00000361138 BAG4O95429 457 aaKnown RBP16.64■□□□□ 0.25
SMC5-201ENST00000361138 ZSCAN23Q3MJ62 389 aa16.64■□□□□ 0.25
SMC5-201ENST00000361138 HIP1O00291 1037 aa16.64■□□□□ 0.25
SMC5-201ENST00000361138 CCT4P50991 539 aaKnown RBP16.64■□□□□ 0.25
SMC5-201ENST00000361138 NUP62CLQ9H1M0 184 aa16.64■□□□□ 0.25
SMC5-201ENST00000361138 ZNF396Q96N95 335 aaPredicted RBP16.63■□□□□ 0.25
SMC5-201ENST00000361138 SYNJ2O15056 1496 aa16.63■□□□□ 0.25
SMC5-201ENST00000361138 TMPOP42166 694 aaKnown RBP16.63■□□□□ 0.25
SMC5-201ENST00000361138 PTPRKQ15262 1439 aa16.63■□□□□ 0.25
SMC5-201ENST00000361138 RUFY1Q96T51 708 aa16.63■□□□□ 0.25
SMC5-201ENST00000361138 DDX58O95786 925 aaKnown RBP16.63■□□□□ 0.25
SMC5-201ENST00000361138 FSD1Q9BTV5 496 aa16.63■□□□□ 0.25
SMC5-201ENST00000361138 SRCIN1Q9C0H9 1055 aa16.63■□□□□ 0.25
SMC5-201ENST00000361138 DHX29Q7Z478 1369 aaKnown RBP16.63■□□□□ 0.25
SMC5-201ENST00000361138 DISP3Q9P2K9 1392 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms