RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 TWISTNBQ3B726 338 aaPredicted RBP17.74■□□□□ 0.43
CHD4-201ENST00000357008 PSME1Q06323 249 aa17.73■□□□□ 0.43
CHD4-201ENST00000357008 FILIP1LQ4L180 1135 aa17.73■□□□□ 0.43
CHD4-201ENST00000357008 SCAPERQ9BY12 1400 aa17.73■□□□□ 0.43
CHD4-201ENST00000357008 SMARCE1Q969G3 411 aa17.73■□□□□ 0.43
CHD4-201ENST00000357008 NOB1Q9ULX3 412 aaKnown RBP17.73■□□□□ 0.43
CHD4-201ENST00000357008 RRBP1Q9P2E9 1410 aaKnown RBP17.73■□□□□ 0.43
CHD4-201ENST00000357008 MCM4P33991 863 aa17.73■□□□□ 0.43
CHD4-201ENST00000357008 AEBP1Q8IUX7 1158 aa17.73■□□□□ 0.43
CHD4-201ENST00000357008 AIMP1Q12904 312 aaKnown RBP17.72■□□□□ 0.43
CHD4-201ENST00000357008 NCOA2Q15596 1464 aa17.72■□□□□ 0.43
CHD4-201ENST00000357008 GNAI2P04899 355 aa17.72■□□□□ 0.43
CHD4-201ENST00000357008 FMNL2Q96PY5 1086 aa17.72■□□□□ 0.43
CHD4-201ENST00000357008 SPC24Q8NBT2 197 aa17.72■□□□□ 0.43
CHD4-201ENST00000357008 ESPNB1AK53 854 aa17.72■□□□□ 0.43
CHD4-201ENST00000357008 PRKAR2BP31323 418 aa17.71■□□□□ 0.43
CHD4-201ENST00000357008 RAPGEF4Q8WZA2 1011 aa17.71■□□□□ 0.43
CHD4-201ENST00000357008 ERC1Q8IUD2 1116 aa17.71■□□□□ 0.43
CHD4-201ENST00000357008 C1orf115Q9H7X2 142 aa17.71■□□□□ 0.43
CHD4-201ENST00000357008 CT47A1Q5JQC4 288 aaPredicted RBP17.71■□□□□ 0.43
CHD4-201ENST00000357008 WDR63Q8IWG1 891 aa17.71■□□□□ 0.43
CHD4-201ENST00000357008 CASKIN1Q8WXD9 1431 aa17.71■□□□□ 0.43
CHD4-201ENST00000357008 SART3Q15020 963 aaKnown RBP17.71■□□□□ 0.43
CHD4-201ENST00000357008 LEKR1Q6ZMV7 388 aa17.71■□□□□ 0.43
CHD4-201ENST00000357008 CCDC112Q8NEF3 446 aa17.71■□□□□ 0.43
CHD4-201ENST00000357008 PKNOX2Q96KN3 472 aa17.7■□□□□ 0.42
CHD4-201ENST00000357008 GAS2L2Q8NHY3 880 aa17.7■□□□□ 0.42
CHD4-201ENST00000357008 STK38Q15208 465 aa17.7■□□□□ 0.42
CHD4-201ENST00000357008 TTLL5Q6EMB2 1281 aa17.7■□□□□ 0.42
CHD4-201ENST00000357008 CTDP1Q9Y5B0 961 aaPredicted RBP17.7■□□□□ 0.42
CHD4-201ENST00000357008 EPS15P42566 896 aa17.69■□□□□ 0.42
CHD4-201ENST00000357008 CYP46A1Q9Y6A2 500 aa17.69■□□□□ 0.42
CHD4-201ENST00000357008 MVPQ14764 893 aaKnown RBP17.69■□□□□ 0.42
CHD4-201ENST00000357008 PIP4K2AP48426 406 aaPredicted RBP17.69■□□□□ 0.42
CHD4-201ENST00000357008 CCDC191Q8NCU4 936 aa17.69■□□□□ 0.42
CHD4-201ENST00000357008 CCDC43Q96MW1 224 aaKnown RBP17.69■□□□□ 0.42
CHD4-201ENST00000357008 ANKRD1Q15327 319 aa17.69■□□□□ 0.42
CHD4-201ENST00000357008 RRP9O43818 475 aaKnown RBP17.69■□□□□ 0.42
CHD4-201ENST00000357008 MYO6Q9UM54 1294 aa17.69■□□□□ 0.42
CHD4-201ENST00000357008 JMYQ8N9B5 988 aa17.68■□□□□ 0.42
CHD4-201ENST00000357008 TNMDQ9H2S6 317 aa17.68■□□□□ 0.42
CHD4-201ENST00000357008 ATF7IPQ6VMQ6 1270 aa17.68■□□□□ 0.42
CHD4-201ENST00000357008 KRT85P78386 507 aa17.68■□□□□ 0.42
CHD4-201ENST00000357008 CALRP27797 417 aaKnown RBP17.68■□□□□ 0.42
CHD4-201ENST00000357008 TMEM132EQ6IEE7 984 aa17.68■□□□□ 0.42
CHD4-201ENST00000357008 TSR2Q969E8 191 aaKnown RBP17.68■□□□□ 0.42
CHD4-201ENST00000357008 RDXP35241 583 aaKnown RBP17.67■□□□□ 0.42
CHD4-201ENST00000357008 UQCRHLA0A096LP55 91 aa17.67■□□□□ 0.42
CHD4-201ENST00000357008 UQCRHP07919 91 aa17.67■□□□□ 0.42
CHD4-201ENST00000357008 GAPVD1Q14C86 1478 aa17.67■□□□□ 0.42
CHD4-201ENST00000357008 CHD1LQ86WJ1 897 aa17.67■□□□□ 0.42
CHD4-201ENST00000357008 TBC1D2BQ9UPU7 963 aa17.66■□□□□ 0.42
CHD4-201ENST00000357008 CFAP70Q5T0N1 1121 aa17.66■□□□□ 0.42
CHD4-201ENST00000357008 FGD5Q6ZNL6 1462 aa17.66■□□□□ 0.42
CHD4-201ENST00000357008 CCT4P50991 539 aaKnown RBP17.66■□□□□ 0.42
CHD4-201ENST00000357008 DNAJC2Q99543 621 aaKnown RBP17.66■□□□□ 0.42
CHD4-201ENST00000357008 ODF2Q5BJF6 829 aa17.66■□□□□ 0.42
CHD4-201ENST00000357008 LRRCC1Q9C099 1032 aa17.66■□□□□ 0.42
CHD4-201ENST00000357008 HFM1A2PYH4 1435 aa17.66■□□□□ 0.42
CHD4-201ENST00000357008 SERPINC1P01008 464 aa17.65■□□□□ 0.42
CHD4-201ENST00000357008 MAGEC2Q9UBF1 373 aaPredicted RBP17.65■□□□□ 0.42
CHD4-201ENST00000357008 CEBPZQ03701 1054 aaKnown RBP17.65■□□□□ 0.42
CHD4-201ENST00000357008 AXDND1Q5T1B0 1012 aaPredicted RBP17.65■□□□□ 0.42
CHD4-201ENST00000357008 TXLNAP40222 546 aa17.64■□□□□ 0.41
CHD4-201ENST00000357008 ATP2B1P20020 1258 aa17.64■□□□□ 0.41
CHD4-201ENST00000357008 NBPF8Q3BBV2 869 aa17.64■□□□□ 0.41
CHD4-201ENST00000357008 NBPF1Q3BBV0 1214 aa17.64■□□□□ 0.41
CHD4-201ENST00000357008 SRCIN1Q9C0H9 1055 aa17.64■□□□□ 0.41
CHD4-201ENST00000357008 SLC4A2P04920 1241 aa17.63■□□□□ 0.41
CHD4-201ENST00000357008 SYTL4Q96C24 671 aaPredicted RBP17.63■□□□□ 0.41
CHD4-201ENST00000357008 HSP90AB2PQ58FF8 381 aa17.63■□□□□ 0.41
CHD4-201ENST00000357008 NLRP6P59044 892 aa17.63■□□□□ 0.41
CHD4-201ENST00000357008 LARP1BQ659C4 914 aaKnown RBP17.63■□□□□ 0.41
CHD4-201ENST00000357008 ZSCAN30Q86W11 494 aa17.63■□□□□ 0.41
CHD4-201ENST00000357008 DACH1Q9UI36 760 aa17.63■□□□□ 0.41
CHD4-201ENST00000357008 BRPF1P55201 1214 aaPredicted RBP17.62■□□□□ 0.41
CHD4-201ENST00000357008 TSPYL1Q9H0U9 437 aa17.62■□□□□ 0.41
CHD4-201ENST00000357008 ZNHIT6Q9NWK9 470 aaKnown RBP17.62■□□□□ 0.41
CHD4-201ENST00000357008 ME1P48163 572 aa17.62■□□□□ 0.41
CHD4-201ENST00000357008 ERLIN1O75477 346 aa17.61■□□□□ 0.41
CHD4-201ENST00000357008 PPFIBP1Q86W92 1011 aa17.61■□□□□ 0.41
CHD4-201ENST00000357008 FYB1O15117 783 aa17.61■□□□□ 0.41
CHD4-201ENST00000357008 PDIA4P13667 645 aaKnown RBP17.61■□□□□ 0.41
CHD4-201ENST00000357008 MPNDQ8N594 471 aa17.61■□□□□ 0.41
CHD4-201ENST00000357008 ZSCAN31Q96LW9 406 aaPredicted RBP17.61■□□□□ 0.41
CHD4-201ENST00000357008 KIAA1107Q9UPP5 1409 aa17.61■□□□□ 0.41
CHD4-201ENST00000357008 CBFA2T2O43439 604 aa17.6■□□□□ 0.41
CHD4-201ENST00000357008 KDM4AO75164 1064 aa17.6■□□□□ 0.41
CHD4-201ENST00000357008 NLRP2Q9NX02 1062 aa17.6■□□□□ 0.41
CHD4-201ENST00000357008 EIF3JO75822 258 aaKnown RBP17.6■□□□□ 0.41
CHD4-201ENST00000357008 RBM33Q96EV2 1170 aaKnown RBP17.6■□□□□ 0.41
CHD4-201ENST00000357008 CCDC184Q52MB2 194 aa17.59■□□□□ 0.41
CHD4-201ENST00000357008 ZNF428Q96B54 188 aa17.59■□□□□ 0.41
CHD4-201ENST00000357008 NUP62CLQ9H1M0 184 aa17.59■□□□□ 0.41
CHD4-201ENST00000357008 STK3Q13188 491 aa17.58■□□□□ 0.41
CHD4-201ENST00000357008 HDGFL1Q5TGJ6 251 aa17.58■□□□□ 0.41
CHD4-201ENST00000357008 SPATA32Q96LK8 384 aa17.58■□□□□ 0.41
CHD4-201ENST00000357008 CFAP45Q9UL16 551 aa17.58■□□□□ 0.41
CHD4-201ENST00000357008 PLEKHO1Q53GL0 409 aaPredicted RBP17.58■□□□□ 0.4
CHD4-201ENST00000357008 ZFYVE27Q5T4F4 411 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms