RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 ANKRD36BQ8N2N9 1353 aa5.56□□□□□ -1.52
LIG4-201ENST00000356922 CDCA8Q53HL2 280 aa5.56□□□□□ -1.52
LIG4-201ENST00000356922 NSD3Q9BZ95 1437 aa5.56□□□□□ -1.52
LIG4-201ENST00000356922 SOX12O15370 315 aa5.56□□□□□ -1.52
LIG4-201ENST00000356922 TNNT2P45379 298 aaPredicted RBP5.56□□□□□ -1.52
LIG4-201ENST00000356922 LMOD2Q6P5Q4 547 aa5.56□□□□□ -1.52
LIG4-201ENST00000356922 CCDC184Q52MB2 194 aa5.56□□□□□ -1.52
LIG4-201ENST00000356922 ABTB2Q8N961 1025 aa5.55□□□□□ -1.52
LIG4-201ENST00000356922 SPATA31A3Q5VYP0 1347 aa5.55□□□□□ -1.52
LIG4-201ENST00000356922 SLC24A1O60721 1099 aa5.55□□□□□ -1.52
LIG4-201ENST00000356922 ZNF692Q9BU19 519 aaPredicted RBP5.55□□□□□ -1.52
LIG4-201ENST00000356922 TERF2IPQ9NYB0 399 aa5.55□□□□□ -1.52
LIG4-201ENST00000356922 NPHP3Q7Z494 1330 aa5.55□□□□□ -1.52
LIG4-201ENST00000356922 AKAP12Q02952 1782 aa5.54□□□□□ -1.52
LIG4-201ENST00000356922 HDGFL2Q7Z4V5 671 aaPredicted RBP5.54□□□□□ -1.52
LIG4-201ENST00000356922 TRPM3Q9HCF6 1732 aaPredicted RBP5.54□□□□□ -1.52
LIG4-201ENST00000356922 IQSEC2Q5JU85 1478 aa5.54□□□□□ -1.52
LIG4-201ENST00000356922 NLRP6P59044 892 aa5.54□□□□□ -1.52
LIG4-201ENST00000356922 NRKQ7Z2Y5 1582 aa5.54□□□□□ -1.52
LIG4-201ENST00000356922 PIK3C2AO00443 1686 aa5.54□□□□□ -1.52
LIG4-201ENST00000356922 MON2Q7Z3U7 1717 aa5.54□□□□□ -1.52
LIG4-201ENST00000356922 MARF1Q9Y4F3 1742 aaKnown RBP5.54□□□□□ -1.52
LIG4-201ENST00000356922 NHSL1Q5SYE7 1610 aa5.54□□□□□ -1.52
LIG4-201ENST00000356922 ADRA2BP18089 450 aa5.53□□□□□ -1.52
LIG4-201ENST00000356922 RRS1Q15050 365 aaKnown RBP5.53□□□□□ -1.52
LIG4-201ENST00000356922 DIEXFQ68CQ4 756 aaKnown RBP5.53□□□□□ -1.52
LIG4-201ENST00000356922 KNSTRNQ9Y448 316 aa5.53□□□□□ -1.52
LIG4-201ENST00000356922 COL16A1Q07092 1604 aaPredicted RBP5.53□□□□□ -1.52
LIG4-201ENST00000356922 MED1Q15648 1581 aaPredicted RBP5.53□□□□□ -1.52
LIG4-201ENST00000356922 ITSN1Q15811 1721 aa5.53□□□□□ -1.52
LIG4-201ENST00000356922 EDC4Q6P2E9 1401 aaKnown RBP5.53□□□□□ -1.52
LIG4-201ENST00000356922 ILDR1Q86SU0 546 aaPredicted RBP5.53□□□□□ -1.52
LIG4-201ENST00000356922 MIER1Q8N108 512 aa5.53□□□□□ -1.52
LIG4-201ENST00000356922 AXIN2Q9Y2T1 843 aa5.53□□□□□ -1.52
LIG4-201ENST00000356922 ZC3H6P61129 1189 aaKnown RBP5.53□□□□□ -1.52
LIG4-201ENST00000356922 NINLQ9Y2I6 1382 aa5.53□□□□□ -1.52
LIG4-201ENST00000356922 GCP02774 474 aa5.53□□□□□ -1.52
LIG4-201ENST00000356922 ALS2Q96Q42 1657 aa5.52□□□□□ -1.53
LIG4-201ENST00000356922 FBXO41Q8TF61 875 aa5.52□□□□□ -1.53
LIG4-201ENST00000356922 LRRC59Q96AG4 307 aaKnown RBP5.52□□□□□ -1.53
LIG4-201ENST00000356922 PRKRIP1Q9H875 184 aaPredicted RBP5.52□□□□□ -1.53
LIG4-201ENST00000356922 EMILIN1Q9Y6C2 1016 aa5.52□□□□□ -1.53
LIG4-201ENST00000356922 AHDC1Q5TGY3 1603 aaPredicted RBP5.52□□□□□ -1.53
LIG4-201ENST00000356922 NUTM2BA6NNL0 878 aaPredicted RBP5.52□□□□□ -1.53
LIG4-201ENST00000356922 NUTM2EB1AL46 878 aaPredicted RBP5.52□□□□□ -1.53
LIG4-201ENST00000356922 CHRNA2Q15822 529 aa5.52□□□□□ -1.53
LIG4-201ENST00000356922 NUTM2AQ8IVF1 878 aaPredicted RBP5.52□□□□□ -1.53
LIG4-201ENST00000356922 PNPLA6Q8IY17 1366 aa5.52□□□□□ -1.53
LIG4-201ENST00000356922 PHLPP1O60346 1717 aa5.52□□□□□ -1.53
LIG4-201ENST00000356922 OVOS2A0A0J9YW53 1432 aa5.52□□□□□ -1.53
LIG4-201ENST00000356922 OVOS2Q6IE36 1432 aa5.52□□□□□ -1.53
LIG4-201ENST00000356922 POLKQ9UBT6 870 aa5.52□□□□□ -1.53
LIG4-201ENST00000356922 KIF1AQ12756 1690 aa5.52□□□□□ -1.53
LIG4-201ENST00000356922 CGNL1Q0VF96 1302 aa5.52□□□□□ -1.53
LIG4-201ENST00000356922 SBNO1A3KN83 1393 aa5.52□□□□□ -1.53
LIG4-201ENST00000356922 TNS3Q68CZ2 1445 aa5.51□□□□□ -1.53
LIG4-201ENST00000356922 FAM83GA6ND36 823 aa5.51□□□□□ -1.53
LIG4-201ENST00000356922 ADAMTS2O95450 1211 aa5.51□□□□□ -1.53
LIG4-201ENST00000356922 USP31Q70CQ4 1352 aa5.51□□□□□ -1.53
LIG4-201ENST00000356922 USP19O94966 1318 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 MAP3K19Q56UN5 1328 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 TTC21AQ8NDW8 1320 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 HSP90AB2PQ58FF8 381 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 MORC1Q86VD1 984 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 LRP6O75581 1613 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 PARD3Q8TEW0 1356 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 SENP3-EIF4A1A0A087X0R7 540 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 PPM1GO15355 546 aaPredicted RBP5.5□□□□□ -1.53
LIG4-201ENST00000356922 PPP2R1AP30153 589 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 MTHFSP49914 203 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 NLRP13Q86W25 1043 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 PELP1Q8IZL8 1130 aaKnown RBP5.5□□□□□ -1.53
LIG4-201ENST00000356922 COG3Q96JB2 828 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 GOLGB1Q14789 3259 aaKnown RBP5.5□□□□□ -1.53
LIG4-201ENST00000356922 ZBTB7CA1YPR0 619 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 KIAA0232Q92628 1395 aa5.5□□□□□ -1.53
LIG4-201ENST00000356922 ARHGEF25Q86VW2 580 aa5.49□□□□□ -1.53
LIG4-201ENST00000356922 CRYBG1Q9Y4K1 1723 aa5.49□□□□□ -1.53
LIG4-201ENST00000356922 NFAT5O94916 1531 aa5.49□□□□□ -1.53
LIG4-201ENST00000356922 NPC1L1Q9UHC9 1359 aa5.49□□□□□ -1.53
LIG4-201ENST00000356922 PEAK1Q9H792 1746 aa5.49□□□□□ -1.53
LIG4-201ENST00000356922 MAP2P11137 1827 aaKnown RBP5.48□□□□□ -1.53
LIG4-201ENST00000356922 KIF20BQ96Q89 1820 aa5.48□□□□□ -1.53
LIG4-201ENST00000356922 SLIT3O75094 1523 aa5.48□□□□□ -1.53
LIG4-201ENST00000356922 ARHGEF10O15013 1369 aa5.48□□□□□ -1.53
LIG4-201ENST00000356922 JCADQ9P266 1359 aa5.48□□□□□ -1.53
LIG4-201ENST00000356922 LTV1Q96GA3 475 aaPredicted RBP5.48□□□□□ -1.53
LIG4-201ENST00000356922 CAMTA1Q9Y6Y1 1673 aa5.47□□□□□ -1.53
LIG4-201ENST00000356922 HOXC9P31274 260 aa5.47□□□□□ -1.53
LIG4-201ENST00000356922 RGS17Q9UGC6 210 aaPredicted RBP5.47□□□□□ -1.53
LIG4-201ENST00000356922 PHRF1Q9P1Y6 1649 aaKnown RBP5.47□□□□□ -1.53
LIG4-201ENST00000356922 ABCA3Q99758 1704 aa5.47□□□□□ -1.53
LIG4-201ENST00000356922 C8orf37Q96NL8 207 aa5.47□□□□□ -1.53
LIG4-201ENST00000356922 BRD4O60885 1362 aaPredicted RBP5.47□□□□□ -1.53
LIG4-201ENST00000356922 UTRNP46939 3433 aa5.47□□□□□ -1.53
LIG4-201ENST00000356922 RGPD5Q99666 1765 aa5.47□□□□□ -1.53
LIG4-201ENST00000356922 USHBP1Q8N6Y0 703 aa5.47□□□□□ -1.53
LIG4-201ENST00000356922 BTG4Q9NY30 223 aa5.47□□□□□ -1.53
LIG4-201ENST00000356922 COL22A1Q8NFW1 1626 aaPredicted RBP5.46□□□□□ -1.53
LIG4-201ENST00000356922 COL18A1P39060 1754 aa5.46□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms