RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 AMOTL1Q8IY63 956 aa20.25■□□□□ 0.83
SMARCA4-201ENST00000344626 RRP1P56182 461 aaKnown RBP20.24■□□□□ 0.83
SMARCA4-201ENST00000344626 ANKRD45Q5TZF3 282 aa20.23■□□□□ 0.83
SMARCA4-201ENST00000344626 HTATSF1O43719 755 aaKnown RBP20.22■□□□□ 0.83
SMARCA4-201ENST00000344626 IFIT2P09913 472 aaKnown RBP20.22■□□□□ 0.83
SMARCA4-201ENST00000344626 CENPQQ7L2Z9 268 aaPredicted RBP20.22■□□□□ 0.83
SMARCA4-201ENST00000344626 COG6Q9Y2V7 657 aa20.22■□□□□ 0.83
SMARCA4-201ENST00000344626 TBX22Q9Y458 520 aa20.22■□□□□ 0.83
SMARCA4-201ENST00000344626 TRIM44Q96DX7 344 aaPredicted RBP20.21■□□□□ 0.83
SMARCA4-201ENST00000344626 NEUROD6Q96NK8 337 aa20.21■□□□□ 0.83
SMARCA4-201ENST00000344626 BTBD11A6QL63 1104 aa20.2■□□□□ 0.82
SMARCA4-201ENST00000344626 STARD3NLO95772 234 aa20.2■□□□□ 0.82
SMARCA4-201ENST00000344626 GOLGA6L6A8MZA4 724 aa20.2■□□□□ 0.82
SMARCA4-201ENST00000344626 MFAP1P55081 439 aaKnown RBP20.2■□□□□ 0.82
SMARCA4-201ENST00000344626 EMILIN1Q9Y6C2 1016 aa20.2■□□□□ 0.82
SMARCA4-201ENST00000344626 CHMP4CQ96CF2 233 aa20.19■□□□□ 0.82
SMARCA4-201ENST00000344626 CLSTN1O94985 981 aa20.19■□□□□ 0.82
SMARCA4-201ENST00000344626 PTMAP06454 111 aaKnown RBP20.19■□□□□ 0.82
SMARCA4-201ENST00000344626 AAMPQ13685 434 aa20.18■□□□□ 0.82
SMARCA4-201ENST00000344626 RILPL2Q969X0 211 aa20.18■□□□□ 0.82
SMARCA4-201ENST00000344626 NSD3Q9BZ95 1437 aa20.18■□□□□ 0.82
SMARCA4-201ENST00000344626 KAT6BQ8WYB5 2073 aa20.18■□□□□ 0.82
SMARCA4-201ENST00000344626 ZPR1O75312 459 aa20.18■□□□□ 0.82
SMARCA4-201ENST00000344626 NCBP3Q53F19 620 aaKnown RBP20.18■□□□□ 0.82
SMARCA4-201ENST00000344626 RUFY2Q8WXA3 655 aa20.18■□□□□ 0.82
SMARCA4-201ENST00000344626 ABCA5Q8WWZ7 1642 aa20.17■□□□□ 0.82
SMARCA4-201ENST00000344626 SAMD1Q6SPF0 538 aaPredicted RBP20.17■□□□□ 0.82
SMARCA4-201ENST00000344626 APPP05067 770 aa20.17■□□□□ 0.82
SMARCA4-201ENST00000344626 DIAPH3Q9NSV4 1193 aa20.16■□□□□ 0.82
SMARCA4-201ENST00000344626 KIF3AQ9Y496 699 aa20.16■□□□□ 0.82
SMARCA4-201ENST00000344626 UBTFL1P0CB47 393 aaPredicted RBP20.16■□□□□ 0.82
SMARCA4-201ENST00000344626 CTDP1Q9Y5B0 961 aaPredicted RBP20.15■□□□□ 0.82
SMARCA4-201ENST00000344626 ANKRD24Q8TF21 1146 aa20.15■□□□□ 0.82
SMARCA4-201ENST00000344626 SLAIN2Q9P270 581 aa20.15■□□□□ 0.82
SMARCA4-201ENST00000344626 FCHSD2O94868 740 aa20.14■□□□□ 0.82
SMARCA4-201ENST00000344626 ACSBG1Q96GR2 724 aa20.14■□□□□ 0.82
SMARCA4-201ENST00000344626 DDB1Q16531 1140 aa20.14■□□□□ 0.81
SMARCA4-201ENST00000344626 CRBNQ96SW2 442 aa20.14■□□□□ 0.81
SMARCA4-201ENST00000344626 CWC22Q9HCG8 908 aaKnown RBP20.14■□□□□ 0.81
SMARCA4-201ENST00000344626 NOP58Q9Y2X3 529 aaKnown RBP20.14■□□□□ 0.81
SMARCA4-201ENST00000344626 SCAF11Q99590 1463 aaKnown RBP20.13■□□□□ 0.81
SMARCA4-201ENST00000344626 GNAI3P08754 354 aa20.13■□□□□ 0.81
SMARCA4-201ENST00000344626 WWC1Q8IX03 1113 aa20.13■□□□□ 0.81
SMARCA4-201ENST00000344626 TWISTNBQ3B726 338 aaPredicted RBP20.13■□□□□ 0.81
SMARCA4-201ENST00000344626 GNAT3A8MTJ3 354 aa20.12■□□□□ 0.81
SMARCA4-201ENST00000344626 CCDC27Q2M243 656 aa20.12■□□□□ 0.81
SMARCA4-201ENST00000344626 NRDCO43847 1150 aa20.12■□□□□ 0.81
SMARCA4-201ENST00000344626 ORAI2Q96SN7 254 aa20.12■□□□□ 0.81
SMARCA4-201ENST00000344626 CCDC34Q96HJ3 373 aa20.12■□□□□ 0.81
SMARCA4-201ENST00000344626 AMOTQ4VCS5 1084 aa20.12■□□□□ 0.81
SMARCA4-201ENST00000344626 AK7Q96M32 723 aa20.12■□□□□ 0.81
SMARCA4-201ENST00000344626 ST18O60284 1047 aa20.11■□□□□ 0.81
SMARCA4-201ENST00000344626 NEO1Q92859 1461 aa20.11■□□□□ 0.81
SMARCA4-201ENST00000344626 YEATS2Q9ULM3 1422 aa20.11■□□□□ 0.81
SMARCA4-201ENST00000344626 NINLQ9Y2I6 1382 aa20.11■□□□□ 0.81
SMARCA4-201ENST00000344626 PTMSP20962 102 aa20.11■□□□□ 0.81
SMARCA4-201ENST00000344626 SLC4A2P04920 1241 aa20.11■□□□□ 0.81
SMARCA4-201ENST00000344626 VPS53Q5VIR6 699 aa20.11■□□□□ 0.81
SMARCA4-201ENST00000344626 CNNM1Q9NRU3 951 aa20.11■□□□□ 0.81
SMARCA4-201ENST00000344626 ERC2O15083 957 aa20.1■□□□□ 0.81
SMARCA4-201ENST00000344626 MIS18AQ9NYP9 233 aa20.1■□□□□ 0.81
SMARCA4-201ENST00000344626 SPRYD3Q8NCJ5 442 aa20.1■□□□□ 0.81
SMARCA4-201ENST00000344626 PHF14O94880 888 aa20.1■□□□□ 0.81
SMARCA4-201ENST00000344626 TARBP1Q13395 1621 aaKnown RBP20.1■□□□□ 0.81
SMARCA4-201ENST00000344626 FBLN1P23142 703 aa20.09■□□□□ 0.81
SMARCA4-201ENST00000344626 TSR2Q969E8 191 aaKnown RBP20.09■□□□□ 0.81
SMARCA4-201ENST00000344626 ZNF219Q9P2Y4 722 aaPredicted RBP20.09■□□□□ 0.81
SMARCA4-201ENST00000344626 PLCB2Q00722 1185 aa20.09■□□□□ 0.81
SMARCA4-201ENST00000344626 EXOSC9Q06265 439 aaKnown RBP20.09■□□□□ 0.81
SMARCA4-201ENST00000344626 SYNE3Q6ZMZ3 975 aa20.09■□□□□ 0.81
SMARCA4-201ENST00000344626 FYB1O15117 783 aa20.08■□□□□ 0.81
SMARCA4-201ENST00000344626 RPRD2Q5VT52 1461 aaKnown RBP20.08■□□□□ 0.81
SMARCA4-201ENST00000344626 WDR63Q8IWG1 891 aa20.08■□□□□ 0.81
SMARCA4-201ENST00000344626 GBP4Q96PP9 640 aa20.08■□□□□ 0.81
SMARCA4-201ENST00000344626 MPHOSPH8Q99549 860 aa20.08■□□□□ 0.81
SMARCA4-201ENST00000344626 EXOC6Q8TAG9 804 aa20.08■□□□□ 0.8
SMARCA4-201ENST00000344626 CCDC85AQ96PX6 553 aaPredicted RBP20.08■□□□□ 0.8
SMARCA4-201ENST00000344626 BTG4Q9NY30 223 aa20.08■□□□□ 0.8
SMARCA4-201ENST00000344626 MCM10Q7L590 875 aa20.08■□□□□ 0.8
SMARCA4-201ENST00000344626 CT47B1P0C2W7 299 aaPredicted RBP20.07■□□□□ 0.8
SMARCA4-201ENST00000344626 SHANK2Q9UPX8 1470 aa20.07■□□□□ 0.8
SMARCA4-201ENST00000344626 ZNF652Q9Y2D9 606 aa20.07■□□□□ 0.8
SMARCA4-201ENST00000344626 IFNL2Q8IZJ0 200 aa20.07■□□□□ 0.8
SMARCA4-201ENST00000344626 DDX17Q92841 729 aaKnown RBP20.06■□□□□ 0.8
SMARCA4-201ENST00000344626 DCTN1Q14203 1278 aa20.06■□□□□ 0.8
SMARCA4-201ENST00000344626 THUMPD2Q9BTF0 503 aaKnown RBP20.06■□□□□ 0.8
SMARCA4-201ENST00000344626 TCOF1Q13428 1488 aaKnown RBP20.05■□□□□ 0.8
SMARCA4-201ENST00000344626 TTC21BQ7Z4L5 1316 aa20.05■□□□□ 0.8
SMARCA4-201ENST00000344626 AKAP17AQ02040 695 aaKnown RBP20.05■□□□□ 0.8
SMARCA4-201ENST00000344626 DHX16O60231 1041 aaKnown RBP20.05■□□□□ 0.8
SMARCA4-201ENST00000344626 LTKP29376 864 aa20.05■□□□□ 0.8
SMARCA4-201ENST00000344626 NBPF14Q5TI25 921 aa20.04■□□□□ 0.8
SMARCA4-201ENST00000344626 REC8O95072 547 aa20.04■□□□□ 0.8
SMARCA4-201ENST00000344626 ZKSCAN1P17029 563 aaPredicted RBP20.04■□□□□ 0.8
SMARCA4-201ENST00000344626 CSPP1Q1MSJ5 1256 aa20.04■□□□□ 0.8
SMARCA4-201ENST00000344626 NOL8Q76FK4 1167 aaKnown RBP20.04■□□□□ 0.8
SMARCA4-201ENST00000344626 ZCRB1Q8TBF4 217 aaKnown RBP20.03■□□□□ 0.8
SMARCA4-201ENST00000344626 NFE2L2Q16236 605 aa20.03■□□□□ 0.8
SMARCA4-201ENST00000344626 GCP02774 474 aa20.03■□□□□ 0.8
SMARCA4-201ENST00000344626 CPLX2Q6PUV4 134 aaKnown RBP20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms