RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 PUS7Q96PZ0 661 aaKnown RBP13.37□□□□□ -0.27
LIMA1-201ENST00000341247 LTKP29376 864 aa13.36□□□□□ -0.27
LIMA1-201ENST00000341247 NGEFQ8N5V2 710 aa13.36□□□□□ -0.27
LIMA1-201ENST00000341247 LAS1LQ9Y4W2 734 aaKnown RBP13.36□□□□□ -0.27
LIMA1-201ENST00000341247 COL3A1P02461 1466 aaPredicted RBP13.36□□□□□ -0.27
LIMA1-201ENST00000341247 HMOX1P09601 288 aa13.35□□□□□ -0.27
LIMA1-201ENST00000341247 DIAPH1O60610 1272 aaKnown RBP13.35□□□□□ -0.27
LIMA1-201ENST00000341247 NSD2O96028 1365 aa13.34□□□□□ -0.27
LIMA1-201ENST00000341247 TMPOP42166 694 aaKnown RBP13.34□□□□□ -0.27
LIMA1-201ENST00000341247 SLC4A3P48751 1232 aa13.34□□□□□ -0.27
LIMA1-201ENST00000341247 WDR63Q8IWG1 891 aa13.34□□□□□ -0.27
LIMA1-201ENST00000341247 UBR1Q8IWV7 1749 aa13.34□□□□□ -0.27
LIMA1-201ENST00000341247 RIPK4P57078 832 aa13.34□□□□□ -0.27
LIMA1-201ENST00000341247 EXOSC9Q06265 439 aaKnown RBP13.34□□□□□ -0.27
LIMA1-201ENST00000341247 NME9Q86XW9 330 aa13.34□□□□□ -0.27
LIMA1-201ENST00000341247 PHF23Q9BUL5 403 aaPredicted RBP13.33□□□□□ -0.28
LIMA1-201ENST00000341247 MYH16Q9H6N6 1097 aa13.33□□□□□ -0.28
LIMA1-201ENST00000341247 PPP6R1Q9UPN7 881 aa13.33□□□□□ -0.28
LIMA1-201ENST00000341247 EMILIN1Q9Y6C2 1016 aa13.33□□□□□ -0.28
LIMA1-201ENST00000341247 SOX12O15370 315 aa13.32□□□□□ -0.28
LIMA1-201ENST00000341247 PDE3AQ14432 1141 aa13.32□□□□□ -0.28
LIMA1-201ENST00000341247 PRR36Q9H6K5 1346 aa13.32□□□□□ -0.28
LIMA1-201ENST00000341247 PLEKHF1Q96S99 279 aa13.31□□□□□ -0.28
LIMA1-201ENST00000341247 THUMPD2Q9BTF0 503 aaKnown RBP13.31□□□□□ -0.28
LIMA1-201ENST00000341247 ROBO2Q9HCK4 1378 aa13.31□□□□□ -0.28
LIMA1-201ENST00000341247 SMC4Q9NTJ3 1288 aa13.31□□□□□ -0.28
LIMA1-201ENST00000341247 TRIM35Q9UPQ4 493 aa13.31□□□□□ -0.28
LIMA1-201ENST00000341247 TNRQ92752 1358 aa13.31□□□□□ -0.28
LIMA1-201ENST00000341247 PRKAR2BP31323 418 aa13.31□□□□□ -0.28
LIMA1-201ENST00000341247 RRS1Q15050 365 aaKnown RBP13.31□□□□□ -0.28
LIMA1-201ENST00000341247 ADAMTS13Q76LX8 1427 aa13.31□□□□□ -0.28
LIMA1-201ENST00000341247 FTSJ3Q8IY81 847 aaKnown RBP13.3□□□□□ -0.28
LIMA1-201ENST00000341247 NINLQ9Y2I6 1382 aa13.3□□□□□ -0.28
LIMA1-201ENST00000341247 CPS1P31327 1500 aa13.3□□□□□ -0.28
LIMA1-201ENST00000341247 POLKQ9UBT6 870 aa13.3□□□□□ -0.28
LIMA1-201ENST00000341247 ANKRD26Q9UPS8 1709 aa13.3□□□□□ -0.28
LIMA1-201ENST00000341247 WASLO00401 505 aaPredicted RBP13.3□□□□□ -0.28
LIMA1-201ENST00000341247 PCDHB15Q9Y5E8 787 aa13.3□□□□□ -0.28
LIMA1-201ENST00000341247 DLC1Q96QB1 1528 aa13.29□□□□□ -0.28
LIMA1-201ENST00000341247 TMEM2Q9UHN6 1383 aa13.29□□□□□ -0.28
LIMA1-201ENST00000341247 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.29□□□□□ -0.28
LIMA1-201ENST00000341247 CCDC27Q2M243 656 aa13.29□□□□□ -0.28
LIMA1-201ENST00000341247 NUDT16Q96DE0 195 aaKnown RBP13.29□□□□□ -0.28
LIMA1-201ENST00000341247 SLC26A8Q96RN1 970 aa13.29□□□□□ -0.28
LIMA1-201ENST00000341247 PTPRUQ92729 1446 aa13.29□□□□□ -0.28
LIMA1-201ENST00000341247 FAM161AQ3B820 660 aa13.29□□□□□ -0.28
LIMA1-201ENST00000341247 C8orf34Q49A92 452 aa13.29□□□□□ -0.28
LIMA1-201ENST00000341247 KIF20BQ96Q89 1820 aa13.29□□□□□ -0.28
LIMA1-201ENST00000341247 ELL2O00472 640 aaPredicted RBP13.28□□□□□ -0.28
LIMA1-201ENST00000341247 ADGRB2O60241 1585 aa13.28□□□□□ -0.28
LIMA1-201ENST00000341247 PHACTR3Q96KR7 559 aa13.28□□□□□ -0.28
LIMA1-201ENST00000341247 SSH1Q8WYL5 1049 aa13.27□□□□□ -0.28
LIMA1-201ENST00000341247 NEFMP07197 916 aa13.27□□□□□ -0.29
LIMA1-201ENST00000341247 MAP2P11137 1827 aaKnown RBP13.27□□□□□ -0.29
LIMA1-201ENST00000341247 C3P01024 1663 aa13.27□□□□□ -0.29
LIMA1-201ENST00000341247 CPSF1Q10570 1443 aaKnown RBP13.27□□□□□ -0.29
LIMA1-201ENST00000341247 PPIP5K1Q6PFW1 1433 aa13.27□□□□□ -0.29
LIMA1-201ENST00000341247 ITPRIPQ8IWB1 547 aa13.26□□□□□ -0.29
LIMA1-201ENST00000341247 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.26□□□□□ -0.29
LIMA1-201ENST00000341247 ZKSCAN2Q63HK3 967 aa13.26□□□□□ -0.29
LIMA1-201ENST00000341247 PNPLA6Q8IY17 1366 aa13.25□□□□□ -0.29
LIMA1-201ENST00000341247 DZIP1LQ8IYY4 767 aaKnown RBP13.25□□□□□ -0.29
LIMA1-201ENST00000341247 NOB1Q9ULX3 412 aaKnown RBP13.25□□□□□ -0.29
LIMA1-201ENST00000341247 ATP7BP35670 1465 aa13.24□□□□□ -0.29
LIMA1-201ENST00000341247 COG3Q96JB2 828 aa13.24□□□□□ -0.29
LIMA1-201ENST00000341247 MED14O60244 1454 aa13.24□□□□□ -0.29
LIMA1-201ENST00000341247 TRIM27P14373 513 aa13.24□□□□□ -0.29
LIMA1-201ENST00000341247 RTL5Q5HYW3 569 aaPredicted RBP13.24□□□□□ -0.29
LIMA1-201ENST00000341247 BCL11AQ9H165 835 aa13.24□□□□□ -0.29
LIMA1-201ENST00000341247 DAXXQ9UER7 740 aaPredicted RBP13.24□□□□□ -0.29
LIMA1-201ENST00000341247 CCDC61Q9Y6R9 512 aa13.24□□□□□ -0.29
LIMA1-201ENST00000341247 RSPH6AQ9H0K4 717 aa13.23□□□□□ -0.29
LIMA1-201ENST00000341247 TECPR2O15040 1411 aa13.23□□□□□ -0.29
LIMA1-201ENST00000341247 HDGFP51858 240 aaKnown RBP13.23□□□□□ -0.29
LIMA1-201ENST00000341247 MVPQ14764 893 aaKnown RBP13.23□□□□□ -0.29
LIMA1-201ENST00000341247 KNDC1Q76NI1 1749 aa13.23□□□□□ -0.29
LIMA1-201ENST00000341247 FCHSD2O94868 740 aa13.23□□□□□ -0.29
LIMA1-201ENST00000341247 LRRC7Q96NW7 1537 aa13.22□□□□□ -0.29
LIMA1-201ENST00000341247 DCTN1Q14203 1278 aa13.22□□□□□ -0.29
LIMA1-201ENST00000341247 PDZRN3Q9UPQ7 1066 aa13.22□□□□□ -0.29
LIMA1-201ENST00000341247 FAM83GA6ND36 823 aa13.22□□□□□ -0.29
LIMA1-201ENST00000341247 SEC24BO95487 1268 aa13.22□□□□□ -0.29
LIMA1-201ENST00000341247 DEKP35659 375 aaKnown RBP13.21□□□□□ -0.29
LIMA1-201ENST00000341247 PMFBP1Q8TBY8 1022 aa13.21□□□□□ -0.29
LIMA1-201ENST00000341247 TMEM57Q8N5G2 664 aa13.21□□□□□ -0.3
LIMA1-201ENST00000341247 PNNQ9H307 717 aaKnown RBP13.21□□□□□ -0.3
LIMA1-201ENST00000341247 MON2Q7Z3U7 1717 aa13.2□□□□□ -0.3
LIMA1-201ENST00000341247 RGPD8O14715 1765 aaPredicted RBP13.2□□□□□ -0.3
LIMA1-201ENST00000341247 TSPYL6Q8N831 410 aa13.2□□□□□ -0.3
LIMA1-201ENST00000341247 RBM33Q96EV2 1170 aaKnown RBP13.2□□□□□ -0.3
LIMA1-201ENST00000341247 ATF7IPQ6VMQ6 1270 aa13.2□□□□□ -0.3
LIMA1-201ENST00000341247 DDRGK1Q96HY6 314 aa13.2□□□□□ -0.3
LIMA1-201ENST00000341247 RWDD1Q9H446 243 aaPredicted RBP13.2□□□□□ -0.3
LIMA1-201ENST00000341247 CDC42BPGQ6DT37 1551 aa13.19□□□□□ -0.3
LIMA1-201ENST00000341247 AEBP1Q8IUX7 1158 aa13.19□□□□□ -0.3
LIMA1-201ENST00000341247 FER1L4A9Z1Z3 1794 aa13.19□□□□□ -0.3
LIMA1-201ENST00000341247 AKAP12Q02952 1782 aa13.19□□□□□ -0.3
LIMA1-201ENST00000341247 TRHP20396 242 aaPredicted RBP13.19□□□□□ -0.3
LIMA1-201ENST00000341247 IL13P35225 146 aa13.19□□□□□ -0.3
LIMA1-201ENST00000341247 FAM135BQ49AJ0 1406 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms