RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 GGNBP2Q9H3C7 697 aa23.31■■□□□ 1.32
CLDN4-201ENST00000340958 AHDC1Q5TGY3 1603 aaPredicted RBP23.3■■□□□ 1.32
CLDN4-201ENST00000340958 HNRNPUQ00839 825 aaKnown RBP eCLIP23.3■■□□□ 1.32
CLDN4-201ENST00000340958 PNISRQ8TF01 805 aaKnown RBP23.3■■□□□ 1.32
CLDN4-201ENST00000340958 PLEKHG3A1L390 1219 aa23.29■■□□□ 1.32
CLDN4-201ENST00000340958 PMFBP1Q8TBY8 1022 aa23.29■■□□□ 1.32
CLDN4-201ENST00000340958 NHSL1Q5SYE7 1610 aa23.29■■□□□ 1.32
CLDN4-201ENST00000340958 RGPD8O14715 1765 aaPredicted RBP23.29■■□□□ 1.32
CLDN4-201ENST00000340958 ACEP12821 1306 aa23.29■■□□□ 1.32
CLDN4-201ENST00000340958 COL16A1Q07092 1604 aaPredicted RBP23.29■■□□□ 1.32
CLDN4-201ENST00000340958 NGDNQ8NEJ9 315 aaKnown RBP23.29■■□□□ 1.32
CLDN4-201ENST00000340958 CPSF1Q10570 1443 aaKnown RBP23.28■■□□□ 1.32
CLDN4-201ENST00000340958 FYB1O15117 783 aa23.28■■□□□ 1.32
CLDN4-201ENST00000340958 EDC4Q6P2E9 1401 aaKnown RBP23.27■■□□□ 1.32
CLDN4-201ENST00000340958 ANKARQ7Z5J8 1434 aa23.27■■□□□ 1.32
CLDN4-201ENST00000340958 ORAI2Q96SN7 254 aa23.27■■□□□ 1.32
CLDN4-201ENST00000340958 ITSN1Q15811 1721 aa23.25■■□□□ 1.31
CLDN4-201ENST00000340958 TOPAZ1Q8N9V7 1692 aa23.23■■□□□ 1.31
CLDN4-201ENST00000340958 WDR43Q15061 677 aaKnown RBP eCLIP23.23■■□□□ 1.31
CLDN4-201ENST00000340958 DDX17Q92841 729 aaKnown RBP23.23■■□□□ 1.31
CLDN4-201ENST00000340958 ESCO1Q5FWF5 840 aa23.22■■□□□ 1.31
CLDN4-201ENST00000340958 NME9Q86XW9 330 aa23.2■■□□□ 1.3
CLDN4-201ENST00000340958 COG3Q96JB2 828 aa23.19■■□□□ 1.3
CLDN4-201ENST00000340958 CFAP53Q96M91 514 aa23.19■■□□□ 1.3
CLDN4-201ENST00000340958 AKAP12Q02952 1782 aa23.19■■□□□ 1.3
CLDN4-201ENST00000340958 KIF20BQ96Q89 1820 aa23.19■■□□□ 1.3
CLDN4-201ENST00000340958 PHF8Q9UPP1 1060 aa23.19■■□□□ 1.3
CLDN4-201ENST00000340958 KIF1AQ12756 1690 aa23.19■■□□□ 1.3
CLDN4-201ENST00000340958 MTHFSP49914 203 aa23.18■■□□□ 1.3
CLDN4-201ENST00000340958 MON2Q7Z3U7 1717 aa23.18■■□□□ 1.3
CLDN4-201ENST00000340958 TTC21BQ7Z4L5 1316 aa23.18■■□□□ 1.3
CLDN4-201ENST00000340958 USP6P35125 1406 aa23.18■■□□□ 1.3
CLDN4-201ENST00000340958 POLR3AO14802 1390 aaPredicted RBP23.17■■□□□ 1.3
CLDN4-201ENST00000340958 MED1Q15648 1581 aaPredicted RBP23.15■■□□□ 1.3
CLDN4-201ENST00000340958 SHPRHQ149N8 1683 aa23.15■■□□□ 1.3
CLDN4-201ENST00000340958 ANKRD26Q9UPS8 1709 aa23.14■■□□□ 1.3
CLDN4-201ENST00000340958 JCADQ9P266 1359 aa23.14■■□□□ 1.29
CLDN4-201ENST00000340958 FOXO3O43524 673 aa23.13■■□□□ 1.29
CLDN4-201ENST00000340958 PAK3O75914 559 aaPredicted RBP23.13■■□□□ 1.29
CLDN4-201ENST00000340958 ZRANB1Q9UGI0 708 aa23.13■■□□□ 1.29
CLDN4-201ENST00000340958 TTC21AQ8NDW8 1320 aa23.13■■□□□ 1.29
CLDN4-201ENST00000340958 PSME1Q06323 249 aa23.12■■□□□ 1.29
CLDN4-201ENST00000340958 PXDNQ92626 1479 aa23.12■■□□□ 1.29
CLDN4-201ENST00000340958 SOS2Q07890 1332 aaPredicted RBP23.12■■□□□ 1.29
CLDN4-201ENST00000340958 NPHP3Q7Z494 1330 aa23.12■■□□□ 1.29
CLDN4-201ENST00000340958 PPM1GO15355 546 aaPredicted RBP23.11■■□□□ 1.29
CLDN4-201ENST00000340958 ADAMTS8Q9UP79 889 aa23.11■■□□□ 1.29
CLDN4-201ENST00000340958 XPCQ01831 940 aaPredicted RBP23.1■■□□□ 1.29
CLDN4-201ENST00000340958 SENP3-EIF4A1A0A087X0R7 540 aa23.09■■□□□ 1.29
CLDN4-201ENST00000340958 LRRC59Q96AG4 307 aaKnown RBP23.08■■□□□ 1.29
CLDN4-201ENST00000340958 ZBED9Q6R2W3 1325 aa23.08■■□□□ 1.29
CLDN4-201ENST00000340958 NRKQ7Z2Y5 1582 aa23.07■■□□□ 1.28
CLDN4-201ENST00000340958 SSH2Q76I76 1423 aa23.06■■□□□ 1.28
CLDN4-201ENST00000340958 FBLN1P23142 703 aa23.05■■□□□ 1.28
CLDN4-201ENST00000340958 ABTB2Q8N961 1025 aa23.05■■□□□ 1.28
CLDN4-201ENST00000340958 NUDCQ9Y266 331 aa23.05■■□□□ 1.28
CLDN4-201ENST00000340958 PNPLA6Q8IY17 1366 aa23.05■■□□□ 1.28
CLDN4-201ENST00000340958 SOX12O15370 315 aa23.05■■□□□ 1.28
CLDN4-201ENST00000340958 NLRP6P59044 892 aa23.04■■□□□ 1.28
CLDN4-201ENST00000340958 INSRP06213 1382 aa23.04■■□□□ 1.28
CLDN4-201ENST00000340958 POLKQ9UBT6 870 aa23.03■■□□□ 1.28
CLDN4-201ENST00000340958 SALL2Q9Y467 1007 aaPredicted RBP23.03■■□□□ 1.28
CLDN4-201ENST00000340958 LRP6O75581 1613 aa23.03■■□□□ 1.28
CLDN4-201ENST00000340958 NUTM2GQ5VZR2 741 aa23.03■■□□□ 1.28
CLDN4-201ENST00000340958 SPATA31A6Q5VVP1 1343 aa23.03■■□□□ 1.28
CLDN4-201ENST00000340958 KRT28Q7Z3Y7 464 aa23.02■■□□□ 1.28
CLDN4-201ENST00000340958 AATKQ6ZMQ8 1374 aa23.02■■□□□ 1.28
CLDN4-201ENST00000340958 BLMP54132 1417 aaPredicted RBP23.02■■□□□ 1.28
CLDN4-201ENST00000340958 RRS1Q15050 365 aaKnown RBP23.01■■□□□ 1.27
CLDN4-201ENST00000340958 TRPM3Q9HCF6 1732 aaPredicted RBP23.01■■□□□ 1.27
CLDN4-201ENST00000340958 COL22A1Q8NFW1 1626 aaPredicted RBP23.01■■□□□ 1.27
CLDN4-201ENST00000340958 U2SURPO15042 1029 aaKnown RBP23.01■■□□□ 1.27
CLDN4-201ENST00000340958 EMILIN1Q9Y6C2 1016 aa23.01■■□□□ 1.27
CLDN4-201ENST00000340958 OVOS2A0A0J9YW53 1432 aa23■■□□□ 1.27
CLDN4-201ENST00000340958 OVOS2Q6IE36 1432 aa23■■□□□ 1.27
CLDN4-201ENST00000340958 DIAPH1O60610 1272 aaKnown RBP23■■□□□ 1.27
CLDN4-201ENST00000340958 U2AF1L5P0DN76 240 aaPredicted RBP23■■□□□ 1.27
CLDN4-201ENST00000340958 U2AF1Q01081 240 aaKnown RBP eCLIP23■■□□□ 1.27
CLDN4-201ENST00000340958 CCDC146Q8IYE0 955 aa23■■□□□ 1.27
CLDN4-201ENST00000340958 PELP1Q8IZL8 1130 aaKnown RBP23■■□□□ 1.27
CLDN4-201ENST00000340958 LMOD2Q6P5Q4 547 aa22.99■■□□□ 1.27
CLDN4-201ENST00000340958 USP31Q70CQ4 1352 aa22.98■■□□□ 1.27
CLDN4-201ENST00000340958 SPATA31A3Q5VYP0 1347 aa22.97■■□□□ 1.27
CLDN4-201ENST00000340958 NUTM2BA6NNL0 878 aaPredicted RBP22.97■■□□□ 1.27
CLDN4-201ENST00000340958 NUTM2EB1AL46 878 aaPredicted RBP22.97■■□□□ 1.27
CLDN4-201ENST00000340958 NUTM2AQ8IVF1 878 aaPredicted RBP22.97■■□□□ 1.27
CLDN4-201ENST00000340958 TNS3Q68CZ2 1445 aa22.97■■□□□ 1.27
CLDN4-201ENST00000340958 MAP2P11137 1827 aaKnown RBP22.96■■□□□ 1.27
CLDN4-201ENST00000340958 SBNO1A3KN83 1393 aa22.95■■□□□ 1.26
CLDN4-201ENST00000340958 PIK3C2AO00443 1686 aa22.95■■□□□ 1.26
CLDN4-201ENST00000340958 ALS2Q96Q42 1657 aa22.95■■□□□ 1.26
CLDN4-201ENST00000340958 PHF23Q9BUL5 403 aaPredicted RBP22.94■■□□□ 1.26
CLDN4-201ENST00000340958 PLEKHG5O94827 1062 aa22.93■■□□□ 1.26
CLDN4-201ENST00000340958 CDK12Q9NYV4 1490 aaPredicted RBP22.92■■□□□ 1.26
CLDN4-201ENST00000340958 SMG6Q86US8 1419 aaKnown RBP22.92■■□□□ 1.26
CLDN4-201ENST00000340958 AMPHP49418 695 aa22.92■■□□□ 1.26
CLDN4-201ENST00000340958 RUNDC1Q96C34 613 aa22.92■■□□□ 1.26
CLDN4-201ENST00000340958 COL3A1P02461 1466 aaPredicted RBP22.91■■□□□ 1.26
CLDN4-201ENST00000340958 MEX3CQ5U5Q3 659 aaKnown RBP22.91■■□□□ 1.26
CLDN4-201ENST00000340958 ABCA3Q99758 1704 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms