RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TOPAZ1Q8N9V7 1692 aa13.52□□□□□ -0.25
HMGB3-201ENST00000325307 NSD2O96028 1365 aa13.52□□□□□ -0.25
HMGB3-201ENST00000325307 PPP2R1AP30153 589 aa13.51□□□□□ -0.25
HMGB3-201ENST00000325307 NME9Q86XW9 330 aa13.51□□□□□ -0.25
HMGB3-201ENST00000325307 PAK3O75914 559 aaPredicted RBP13.51□□□□□ -0.25
HMGB3-201ENST00000325307 PSME1Q06323 249 aa13.51□□□□□ -0.25
HMGB3-201ENST00000325307 FAM9BQ8IZU0 186 aa13.51□□□□□ -0.25
HMGB3-201ENST00000325307 USP6P35125 1406 aa13.5□□□□□ -0.25
HMGB3-201ENST00000325307 TTC21BQ7Z4L5 1316 aa13.5□□□□□ -0.25
HMGB3-201ENST00000325307 POLR3AO14802 1390 aaPredicted RBP13.5□□□□□ -0.25
HMGB3-201ENST00000325307 DCCP43146 1447 aa13.5□□□□□ -0.25
HMGB3-201ENST00000325307 BRD4O60885 1362 aaPredicted RBP13.5□□□□□ -0.25
HMGB3-201ENST00000325307 FOXO3O43524 673 aa13.5□□□□□ -0.25
HMGB3-201ENST00000325307 C1orf167Q5SNV9 1468 aa13.49□□□□□ -0.25
HMGB3-201ENST00000325307 COG3Q96JB2 828 aa13.49□□□□□ -0.25
HMGB3-201ENST00000325307 ZRANB1Q9UGI0 708 aa13.48□□□□□ -0.25
HMGB3-201ENST00000325307 XPCQ01831 940 aaPredicted RBP13.48□□□□□ -0.25
HMGB3-201ENST00000325307 MST1RQ04912 1400 aa13.48□□□□□ -0.25
HMGB3-201ENST00000325307 AKAP12Q02952 1782 aa13.47□□□□□ -0.25
HMGB3-201ENST00000325307 MON2Q7Z3U7 1717 aa13.47□□□□□ -0.25
HMGB3-201ENST00000325307 TTC21AQ8NDW8 1320 aa13.46□□□□□ -0.25
HMGB3-201ENST00000325307 NUTM2GQ5VZR2 741 aa13.46□□□□□ -0.26
HMGB3-201ENST00000325307 LMOD2Q6P5Q4 547 aa13.46□□□□□ -0.26
HMGB3-201ENST00000325307 SOX12O15370 315 aa13.45□□□□□ -0.26
HMGB3-201ENST00000325307 SLAIN2Q9P270 581 aa13.45□□□□□ -0.26
HMGB3-201ENST00000325307 XIRP1Q702N8 1843 aaKnown RBP13.45□□□□□ -0.26
HMGB3-201ENST00000325307 ABTB2Q8N961 1025 aa13.45□□□□□ -0.26
HMGB3-201ENST00000325307 MTHFSP49914 203 aa13.45□□□□□ -0.26
HMGB3-201ENST00000325307 KIF20BQ96Q89 1820 aa13.44□□□□□ -0.26
HMGB3-201ENST00000325307 PPM1GO15355 546 aaPredicted RBP13.44□□□□□ -0.26
HMGB3-201ENST00000325307 NLRP6P59044 892 aa13.44□□□□□ -0.26
HMGB3-201ENST00000325307 PLEKHG5O94827 1062 aa13.43□□□□□ -0.26
HMGB3-201ENST00000325307 KRT28Q7Z3Y7 464 aa13.43□□□□□ -0.26
HMGB3-201ENST00000325307 FBLN1P23142 703 aa13.43□□□□□ -0.26
HMGB3-201ENST00000325307 DDX17Q92841 729 aaKnown RBP13.43□□□□□ -0.26
HMGB3-201ENST00000325307 CFAP53Q96M91 514 aa13.43□□□□□ -0.26
HMGB3-201ENST00000325307 SSH2Q76I76 1423 aa13.42□□□□□ -0.26
HMGB3-201ENST00000325307 PNISRQ8TF01 805 aaKnown RBP13.42□□□□□ -0.26
HMGB3-201ENST00000325307 WDR43Q15061 677 aaKnown RBP eCLIP13.42□□□□□ -0.26
HMGB3-201ENST00000325307 NRKQ7Z2Y5 1582 aa13.42□□□□□ -0.26
HMGB3-201ENST00000325307 NPHP3Q7Z494 1330 aa13.42□□□□□ -0.26
HMGB3-201ENST00000325307 BRINP3Q76B58 766 aa13.41□□□□□ -0.26
HMGB3-201ENST00000325307 ANKRD26Q9UPS8 1709 aa13.4□□□□□ -0.26
HMGB3-201ENST00000325307 KIF1AQ12756 1690 aa13.4□□□□□ -0.26
HMGB3-201ENST00000325307 RRS1Q15050 365 aaKnown RBP13.4□□□□□ -0.26
HMGB3-201ENST00000325307 LTBP4Q8N2S1 1624 aa13.4□□□□□ -0.26
HMGB3-201ENST00000325307 HNRNPUQ00839 825 aaKnown RBP eCLIP13.4□□□□□ -0.27
HMGB3-201ENST00000325307 EMILIN1Q9Y6C2 1016 aa13.38□□□□□ -0.27
HMGB3-201ENST00000325307 OVOS2A0A0J9YW53 1432 aa13.38□□□□□ -0.27
HMGB3-201ENST00000325307 OVOS2Q6IE36 1432 aa13.38□□□□□ -0.27
HMGB3-201ENST00000325307 POLKQ9UBT6 870 aa13.38□□□□□ -0.27
HMGB3-201ENST00000325307 EIF5BO60841 1220 aaKnown RBP13.38□□□□□ -0.27
HMGB3-201ENST00000325307 USP31Q70CQ4 1352 aa13.37□□□□□ -0.27
HMGB3-201ENST00000325307 SENP3-EIF4A1A0A087X0R7 540 aa13.37□□□□□ -0.27
HMGB3-201ENST00000325307 PIK3C2AO00443 1686 aa13.36□□□□□ -0.27
HMGB3-201ENST00000325307 ADAMTS8Q9UP79 889 aa13.36□□□□□ -0.27
HMGB3-201ENST00000325307 AATKQ6ZMQ8 1374 aa13.36□□□□□ -0.27
HMGB3-201ENST00000325307 ZBTB7CA1YPR0 619 aa13.36□□□□□ -0.27
HMGB3-201ENST00000325307 U2SURPO15042 1029 aaKnown RBP13.35□□□□□ -0.27
HMGB3-201ENST00000325307 NUDCQ9Y266 331 aa13.35□□□□□ -0.27
HMGB3-201ENST00000325307 AMPHP49418 695 aa13.34□□□□□ -0.27
HMGB3-201ENST00000325307 DIAPH1O60610 1272 aaKnown RBP13.34□□□□□ -0.27
HMGB3-201ENST00000325307 PIP4K2BP78356 416 aa13.34□□□□□ -0.27
HMGB3-201ENST00000325307 TOM1O60784 492 aa13.33□□□□□ -0.27
HMGB3-201ENST00000325307 U2AF1L5P0DN76 240 aaPredicted RBP13.33□□□□□ -0.28
HMGB3-201ENST00000325307 U2AF1Q01081 240 aaKnown RBP eCLIP13.33□□□□□ -0.28
HMGB3-201ENST00000325307 SBNO1A3KN83 1393 aa13.33□□□□□ -0.28
HMGB3-201ENST00000325307 MAP3K19Q56UN5 1328 aa13.33□□□□□ -0.28
HMGB3-201ENST00000325307 KCNH5Q8NCM2 988 aa13.32□□□□□ -0.28
HMGB3-201ENST00000325307 UBAP1LF5GYI3 381 aa13.32□□□□□ -0.28
HMGB3-201ENST00000325307 MAP2P11137 1827 aaKnown RBP13.32□□□□□ -0.28
HMGB3-201ENST00000325307 TNS3Q68CZ2 1445 aa13.32□□□□□ -0.28
HMGB3-201ENST00000325307 CCDC146Q8IYE0 955 aa13.31□□□□□ -0.28
HMGB3-201ENST00000325307 SALL2Q9Y467 1007 aaPredicted RBP13.31□□□□□ -0.28
HMGB3-201ENST00000325307 SPATA31A3Q5VYP0 1347 aa13.31□□□□□ -0.28
HMGB3-201ENST00000325307 PXDNQ92626 1479 aa13.31□□□□□ -0.28
HMGB3-201ENST00000325307 GCP02774 474 aa13.31□□□□□ -0.28
HMGB3-201ENST00000325307 TRPM3Q9HCF6 1732 aaPredicted RBP13.31□□□□□ -0.28
HMGB3-201ENST00000325307 SOS2Q07890 1332 aaPredicted RBP13.3□□□□□ -0.28
HMGB3-201ENST00000325307 ARHGEF10O15013 1369 aa13.3□□□□□ -0.28
HMGB3-201ENST00000325307 HAP1P54257 671 aaPredicted RBP13.3□□□□□ -0.28
HMGB3-201ENST00000325307 CABLES1Q8TDN4 633 aa13.3□□□□□ -0.28
HMGB3-201ENST00000325307 PNPLA6Q8IY17 1366 aa13.3□□□□□ -0.28
HMGB3-201ENST00000325307 CDK12Q9NYV4 1490 aaPredicted RBP13.3□□□□□ -0.28
HMGB3-201ENST00000325307 HSP90AB2PQ58FF8 381 aa13.3□□□□□ -0.28
HMGB3-201ENST00000325307 SUPT16HQ9Y5B9 1047 aaKnown RBP13.3□□□□□ -0.28
HMGB3-201ENST00000325307 SMG6Q86US8 1419 aaKnown RBP13.29□□□□□ -0.28
HMGB3-201ENST00000325307 FLT4P35916 1363 aa13.28□□□□□ -0.28
HMGB3-201ENST00000325307 ZC3H6P61129 1189 aaKnown RBP13.28□□□□□ -0.28
HMGB3-201ENST00000325307 USP19O94966 1318 aa13.28□□□□□ -0.28
HMGB3-201ENST00000325307 COL3A1P02461 1466 aaPredicted RBP13.28□□□□□ -0.28
HMGB3-201ENST00000325307 CERKQ8TCT0 537 aa13.28□□□□□ -0.28
HMGB3-201ENST00000325307 LTV1Q96GA3 475 aaPredicted RBP13.28□□□□□ -0.28
HMGB3-201ENST00000325307 INSRP06213 1382 aa13.27□□□□□ -0.28
HMGB3-201ENST00000325307 ROBO1Q9Y6N7 1651 aa13.27□□□□□ -0.28
HMGB3-201ENST00000325307 IL13P35225 146 aa13.27□□□□□ -0.29
HMGB3-201ENST00000325307 HOXC9P31274 260 aa13.26□□□□□ -0.29
HMGB3-201ENST00000325307 EIF4A2Q14240 407 aaKnown RBP13.26□□□□□ -0.29
HMGB3-201ENST00000325307 MARF1Q9Y4F3 1742 aaKnown RBP13.26□□□□□ -0.29
HMGB3-201ENST00000325307 ALS2Q96Q42 1657 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms