RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 MFAP1P55081 439 aaKnown RBP11.66□□□□□ -0.54
TMEM39A-201ENST00000319172 MCM10Q7L590 875 aa11.66□□□□□ -0.54
TMEM39A-201ENST00000319172 MIS18AQ9NYP9 233 aa11.66□□□□□ -0.54
TMEM39A-201ENST00000319172 KDM5DQ9BY66 1539 aa11.66□□□□□ -0.54
TMEM39A-201ENST00000319172 PTPRTO14522 1441 aa11.66□□□□□ -0.54
TMEM39A-201ENST00000319172 TTC5Q8N0Z6 440 aa11.66□□□□□ -0.54
TMEM39A-201ENST00000319172 STRN4Q9NRL3 753 aa11.66□□□□□ -0.54
TMEM39A-201ENST00000319172 NOB1Q9ULX3 412 aaKnown RBP11.66□□□□□ -0.54
TMEM39A-201ENST00000319172 CHMP3Q9Y3E7 222 aa11.66□□□□□ -0.54
TMEM39A-201ENST00000319172 HECW2Q9P2P5 1572 aa11.66□□□□□ -0.54
TMEM39A-201ENST00000319172 NINLQ9Y2I6 1382 aa11.66□□□□□ -0.54
TMEM39A-201ENST00000319172 DUSP27Q5VZP5 1158 aa11.65□□□□□ -0.54
TMEM39A-201ENST00000319172 ARAP3Q8WWN8 1544 aa11.65□□□□□ -0.54
TMEM39A-201ENST00000319172 HSP90AB2PQ58FF8 381 aa11.65□□□□□ -0.54
TMEM39A-201ENST00000319172 SYTL4Q96C24 671 aaPredicted RBP11.65□□□□□ -0.54
TMEM39A-201ENST00000319172 NSD2O96028 1365 aa11.65□□□□□ -0.54
TMEM39A-201ENST00000319172 TTC21BQ7Z4L5 1316 aa11.65□□□□□ -0.54
TMEM39A-201ENST00000319172 PLXNC1O60486 1568 aa11.65□□□□□ -0.54
TMEM39A-201ENST00000319172 ZNF530Q6P9A1 599 aaPredicted RBP11.65□□□□□ -0.55
TMEM39A-201ENST00000319172 TRPM2O94759 1503 aa11.64□□□□□ -0.55
TMEM39A-201ENST00000319172 LRPPRCP42704 1394 aaKnown RBP11.64□□□□□ -0.55
TMEM39A-201ENST00000319172 PLEKHO1Q53GL0 409 aaPredicted RBP11.64□□□□□ -0.55
TMEM39A-201ENST00000319172 POLKQ9UBT6 870 aa11.64□□□□□ -0.55
TMEM39A-201ENST00000319172 TBX22Q9Y458 520 aa11.64□□□□□ -0.55
TMEM39A-201ENST00000319172 PRDM11Q9NQV5 511 aa11.63□□□□□ -0.55
TMEM39A-201ENST00000319172 C1orf115Q9H7X2 142 aa11.63□□□□□ -0.55
TMEM39A-201ENST00000319172 PLEKHH1Q9ULM0 1364 aa11.63□□□□□ -0.55
TMEM39A-201ENST00000319172 PDE3AQ14432 1141 aa11.63□□□□□ -0.55
TMEM39A-201ENST00000319172 PUS7Q96PZ0 661 aaKnown RBP11.63□□□□□ -0.55
TMEM39A-201ENST00000319172 TMEM2Q9UHN6 1383 aa11.63□□□□□ -0.55
TMEM39A-201ENST00000319172 AIMP1Q12904 312 aaKnown RBP11.63□□□□□ -0.55
TMEM39A-201ENST00000319172 LNPKQ9C0E8 428 aa11.63□□□□□ -0.55
TMEM39A-201ENST00000319172 FAM83GA6ND36 823 aa11.62□□□□□ -0.55
TMEM39A-201ENST00000319172 KCNJ4P48050 445 aa11.62□□□□□ -0.55
TMEM39A-201ENST00000319172 ABCA9Q8IUA7 1624 aa11.62□□□□□ -0.55
TMEM39A-201ENST00000319172 SLC4A2P04920 1241 aa11.62□□□□□ -0.55
TMEM39A-201ENST00000319172 TRIM6-TRIM34B2RNG4 842 aa11.61□□□□□ -0.55
TMEM39A-201ENST00000319172 ZNF428Q96B54 188 aa11.61□□□□□ -0.55
TMEM39A-201ENST00000319172 HSP90AB1P08238 724 aaKnown RBP11.61□□□□□ -0.55
TMEM39A-201ENST00000319172 RARSP54136 660 aaKnown RBP11.61□□□□□ -0.55
TMEM39A-201ENST00000319172 FAM161AQ3B820 660 aa11.61□□□□□ -0.55
TMEM39A-201ENST00000319172 ATF7IPQ6VMQ6 1270 aa11.61□□□□□ -0.55
TMEM39A-201ENST00000319172 SKAP1Q86WV1 359 aa11.61□□□□□ -0.55
TMEM39A-201ENST00000319172 KCNH5Q8NCM2 988 aa11.61□□□□□ -0.55
TMEM39A-201ENST00000319172 SSH1Q8WYL5 1049 aa11.61□□□□□ -0.55
TMEM39A-201ENST00000319172 CROCC2H7BZ55 1655 aa11.61□□□□□ -0.55
TMEM39A-201ENST00000319172 MAGI2Q86UL8 1455 aa11.61□□□□□ -0.55
TMEM39A-201ENST00000319172 ABCC3O15438 1527 aa11.61□□□□□ -0.55
TMEM39A-201ENST00000319172 TOM1L2Q6ZVM7 507 aa11.6□□□□□ -0.55
TMEM39A-201ENST00000319172 KRT28Q7Z3Y7 464 aa11.6□□□□□ -0.55
TMEM39A-201ENST00000319172 AEBP1Q8IUX7 1158 aa11.6□□□□□ -0.55
TMEM39A-201ENST00000319172 C9orf78Q9NZ63 289 aaPredicted RBP11.6□□□□□ -0.55
TMEM39A-201ENST00000319172 FANCIQ9NVI1 1328 aa11.6□□□□□ -0.55
TMEM39A-201ENST00000319172 ANP32EQ9BTT0 268 aa11.6□□□□□ -0.55
TMEM39A-201ENST00000319172 IQGAP3Q86VI3 1631 aa11.6□□□□□ -0.55
TMEM39A-201ENST00000319172 KDM5CP41229 1560 aa11.6□□□□□ -0.55
TMEM39A-201ENST00000319172 TATP17735 454 aaPredicted RBP11.59□□□□□ -0.55
TMEM39A-201ENST00000319172 SLKQ9H2G2 1235 aaPredicted RBP11.59□□□□□ -0.55
TMEM39A-201ENST00000319172 HDGFL1Q5TGJ6 251 aa11.59□□□□□ -0.55
TMEM39A-201ENST00000319172 POLR3AO14802 1390 aaPredicted RBP11.59□□□□□ -0.55
TMEM39A-201ENST00000319172 METP08581 1390 aa11.59□□□□□ -0.55
TMEM39A-201ENST00000319172 SLC4A3P48751 1232 aa11.59□□□□□ -0.55
TMEM39A-201ENST00000319172 TPRNQ4KMQ1 711 aa11.58□□□□□ -0.55
TMEM39A-201ENST00000319172 HSCBQ8IWL3 235 aa11.58□□□□□ -0.55
TMEM39A-201ENST00000319172 DDX54Q8TDD1 881 aaKnown RBP11.58□□□□□ -0.55
TMEM39A-201ENST00000319172 EFCAB6Q5THR3 1501 aa11.58□□□□□ -0.56
TMEM39A-201ENST00000319172 CCDC30Q5VVM6 783 aa11.58□□□□□ -0.56
TMEM39A-201ENST00000319172 HOMEZQ8IX15 550 aa11.58□□□□□ -0.56
TMEM39A-201ENST00000319172 NEXNQ0ZGT2 675 aa11.58□□□□□ -0.56
TMEM39A-201ENST00000319172 IPO9Q96P70 1041 aaKnown RBP11.58□□□□□ -0.56
TMEM39A-201ENST00000319172 NUTM2BA6NNL0 878 aaPredicted RBP11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 NUTM2EB1AL46 878 aaPredicted RBP11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 NUTM2AQ8IVF1 878 aaPredicted RBP11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 GNAT3A8MTJ3 354 aa11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 PIP4K2BP78356 416 aa11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 SPINK5Q9NQ38 1064 aaPredicted RBP11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 HDAC5Q9UQL6 1122 aa11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 UNC13BO14795 1591 aa11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 TET3O43151 1660 aa11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 NKTRP30414 1462 aaKnown RBP11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 PIK3C2GO75747 1445 aa11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 CT47B1P0C2W7 299 aaPredicted RBP11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 MVPQ14764 893 aaKnown RBP11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 ABCC11Q96J66 1382 aa11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 ERVK-7P63135 1459 aa11.57□□□□□ -0.56
TMEM39A-201ENST00000319172 EIF4A2Q14240 407 aaKnown RBP11.56□□□□□ -0.56
TMEM39A-201ENST00000319172 CHRNA2Q15822 529 aa11.56□□□□□ -0.56
TMEM39A-201ENST00000319172 PHACTR3Q96KR7 559 aa11.56□□□□□ -0.56
TMEM39A-201ENST00000319172 TMEM57Q8N5G2 664 aa11.56□□□□□ -0.56
TMEM39A-201ENST00000319172 TAF7LQ5H9L4 462 aa11.56□□□□□ -0.56
TMEM39A-201ENST00000319172 TAOK2Q9UL54 1235 aa11.56□□□□□ -0.56
TMEM39A-201ENST00000319172 CLTCL1P53675 1640 aa11.56□□□□□ -0.56
TMEM39A-201ENST00000319172 CADPS2Q86UW7 1296 aa11.56□□□□□ -0.56
TMEM39A-201ENST00000319172 PDZRN3Q9UPQ7 1066 aa11.56□□□□□ -0.56
TMEM39A-201ENST00000319172 RILPL2Q969X0 211 aa11.55□□□□□ -0.56
TMEM39A-201ENST00000319172 MYOM2P54296 1465 aa11.55□□□□□ -0.56
TMEM39A-201ENST00000319172 DDX58O95786 925 aaKnown RBP11.55□□□□□ -0.56
TMEM39A-201ENST00000319172 MPRIPQ6WCQ1 1025 aa11.55□□□□□ -0.56
TMEM39A-201ENST00000319172 RIC3Q7Z5B4 369 aa11.55□□□□□ -0.56
TMEM39A-201ENST00000319172 ORAI2Q96SN7 254 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms