RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 NUTM2GQ5VZR2 741 aa13.87□□□□□ -0.19
VPS39-201ENST00000318006 RAPGEF4Q8WZA2 1011 aa13.87□□□□□ -0.19
VPS39-201ENST00000318006 EXOSC9Q06265 439 aaKnown RBP13.86□□□□□ -0.19
VPS39-201ENST00000318006 PDE3AQ14432 1141 aa13.86□□□□□ -0.19
VPS39-201ENST00000318006 CABP1Q9NZU7 370 aa13.86□□□□□ -0.19
VPS39-201ENST00000318006 MCM4P33991 863 aa13.86□□□□□ -0.19
VPS39-201ENST00000318006 PRPF40AO75400 957 aaKnown RBP13.85□□□□□ -0.19
VPS39-201ENST00000318006 IFIT2P09913 472 aaKnown RBP13.85□□□□□ -0.19
VPS39-201ENST00000318006 AK7Q96M32 723 aa13.85□□□□□ -0.19
VPS39-201ENST00000318006 TMX4Q9H1E5 349 aaPredicted RBP13.85□□□□□ -0.19
VPS39-201ENST00000318006 CCDC73Q6ZRK6 1079 aa13.85□□□□□ -0.19
VPS39-201ENST00000318006 NCOA1Q15788 1441 aa13.85□□□□□ -0.19
VPS39-201ENST00000318006 SMG6Q86US8 1419 aaKnown RBP13.85□□□□□ -0.19
VPS39-201ENST00000318006 ATF3P18847 181 aa13.85□□□□□ -0.19
VPS39-201ENST00000318006 TOMM22Q9NS69 142 aa13.84□□□□□ -0.19
VPS39-201ENST00000318006 TAF3Q5VWG9 929 aa13.84□□□□□ -0.19
VPS39-201ENST00000318006 ZSCAN30Q86W11 494 aa13.84□□□□□ -0.19
VPS39-201ENST00000318006 GAS2L2Q8NHY3 880 aa13.84□□□□□ -0.19
VPS39-201ENST00000318006 CEP89Q96ST8 783 aa13.84□□□□□ -0.19
VPS39-201ENST00000318006 HSP90AB4PQ58FF6 505 aa13.84□□□□□ -0.19
VPS39-201ENST00000318006 ZNF692Q9BU19 519 aaPredicted RBP13.84□□□□□ -0.19
VPS39-201ENST00000318006 PATL2C9JE40 543 aaKnown RBP13.83□□□□□ -0.19
VPS39-201ENST00000318006 RUFY1Q96T51 708 aa13.83□□□□□ -0.19
VPS39-201ENST00000318006 TRIM5Q9C035 493 aa13.83□□□□□ -0.19
VPS39-201ENST00000318006 PDZRN3Q9UPQ7 1066 aa13.83□□□□□ -0.19
VPS39-201ENST00000318006 G3BP1Q13283 466 aaKnown RBP eCLIP13.83□□□□□ -0.2
VPS39-201ENST00000318006 RABEP1Q15276 862 aa13.83□□□□□ -0.2
VPS39-201ENST00000318006 ABTB2Q8N961 1025 aa13.83□□□□□ -0.2
VPS39-201ENST00000318006 ANKRD20A12PQ8NF67 263 aa13.83□□□□□ -0.2
VPS39-201ENST00000318006 LRRFIP1Q32MZ4 808 aaKnown RBP13.83□□□□□ -0.2
VPS39-201ENST00000318006 KIF14Q15058 1648 aa13.83□□□□□ -0.2
VPS39-201ENST00000318006 CPLX2Q6PUV4 134 aaKnown RBP13.82□□□□□ -0.2
VPS39-201ENST00000318006 WDR63Q8IWG1 891 aa13.82□□□□□ -0.2
VPS39-201ENST00000318006 CTTNBP2Q8WZ74 1663 aa13.82□□□□□ -0.2
VPS39-201ENST00000318006 C11orf95C9JLR9 678 aaPredicted RBP13.82□□□□□ -0.2
VPS39-201ENST00000318006 RNF20Q5VTR2 975 aa13.82□□□□□ -0.2
VPS39-201ENST00000318006 THEMISQ8N1K5 641 aaPredicted RBP13.82□□□□□ -0.2
VPS39-201ENST00000318006 BCL11BQ9C0K0 894 aaPredicted RBP13.82□□□□□ -0.2
VPS39-201ENST00000318006 NAT10Q9H0A0 1025 aaKnown RBP13.82□□□□□ -0.2
VPS39-201ENST00000318006 NLRP2Q9NX02 1062 aa13.82□□□□□ -0.2
VPS39-201ENST00000318006 HOOK1Q9UJC3 728 aaKnown RBP13.82□□□□□ -0.2
VPS39-201ENST00000318006 GPRASP1Q5JY77 1395 aa13.82□□□□□ -0.2
VPS39-201ENST00000318006 ATAD2Q6PL18 1390 aa13.82□□□□□ -0.2
VPS39-201ENST00000318006 BCAR3O75815 825 aa13.81□□□□□ -0.2
VPS39-201ENST00000318006 ERCC4Q92889 916 aaPredicted RBP13.81□□□□□ -0.2
VPS39-201ENST00000318006 CIZ1Q9ULV3 898 aaPredicted RBP13.81□□□□□ -0.2
VPS39-201ENST00000318006 H0YHG0 523 aa13.81□□□□□ -0.2
VPS39-201ENST00000318006 MCM2P49736 904 aa13.81□□□□□ -0.2
VPS39-201ENST00000318006 TWISTNBQ3B726 338 aaPredicted RBP13.81□□□□□ -0.2
VPS39-201ENST00000318006 TSR2Q969E8 191 aaKnown RBP13.81□□□□□ -0.2
VPS39-201ENST00000318006 PDCL3Q9H2J4 239 aa13.81□□□□□ -0.2
VPS39-201ENST00000318006 LEKR1Q6ZMV7 388 aa13.81□□□□□ -0.2
VPS39-201ENST00000318006 RTEL1-TNFRSF6BF6WH68 1400 aa13.81□□□□□ -0.2
VPS39-201ENST00000318006 CDR1P51861 262 aa13.8□□□□□ -0.2
VPS39-201ENST00000318006 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.8□□□□□ -0.2
VPS39-201ENST00000318006 THOC2Q8NI27 1593 aaKnown RBP13.8□□□□□ -0.2
VPS39-201ENST00000318006 UBTFL1P0CB47 393 aaPredicted RBP13.8□□□□□ -0.2
VPS39-201ENST00000318006 CCDC112Q8NEF3 446 aa13.8□□□□□ -0.2
VPS39-201ENST00000318006 CT47B1P0C2W7 299 aaPredicted RBP13.8□□□□□ -0.2
VPS39-201ENST00000318006 RDXP35241 583 aaKnown RBP13.8□□□□□ -0.2
VPS39-201ENST00000318006 PDE4CQ08493 712 aa13.8□□□□□ -0.2
VPS39-201ENST00000318006 CWC22Q9HCG8 908 aaKnown RBP13.8□□□□□ -0.2
VPS39-201ENST00000318006 CCDC30Q5VVM6 783 aa13.79□□□□□ -0.2
VPS39-201ENST00000318006 GNAI3P08754 354 aa13.79□□□□□ -0.2
VPS39-201ENST00000318006 SULT6B1Q6IMI4 303 aa13.79□□□□□ -0.2
VPS39-201ENST00000318006 CCP110O43303 1012 aa13.79□□□□□ -0.2
VPS39-201ENST00000318006 ESCO1Q5FWF5 840 aa13.79□□□□□ -0.2
VPS39-201ENST00000318006 ERC2O15083 957 aa13.78□□□□□ -0.2
VPS39-201ENST00000318006 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.78□□□□□ -0.2
VPS39-201ENST00000318006 RIC3Q7Z5B4 369 aa13.78□□□□□ -0.2
VPS39-201ENST00000318006 RPRD2Q5VT52 1461 aaKnown RBP13.78□□□□□ -0.2
VPS39-201ENST00000318006 CD109Q6YHK3 1445 aa13.78□□□□□ -0.2
VPS39-201ENST00000318006 TRIM29Q14134 588 aa13.78□□□□□ -0.2
VPS39-201ENST00000318006 NOB1Q9ULX3 412 aaKnown RBP13.77□□□□□ -0.2
VPS39-201ENST00000318006 NINLQ9Y2I6 1382 aa13.77□□□□□ -0.2
VPS39-201ENST00000318006 K7ELQ4 463 aaPredicted RBP13.77□□□□□ -0.21
VPS39-201ENST00000318006 FBXW7Q969H0 707 aa13.77□□□□□ -0.21
VPS39-201ENST00000318006 NSD3Q9BZ95 1437 aa13.77□□□□□ -0.21
VPS39-201ENST00000318006 CPLX1O14810 134 aa13.77□□□□□ -0.21
VPS39-201ENST00000318006 AIMP1Q12904 312 aaKnown RBP13.77□□□□□ -0.21
VPS39-201ENST00000318006 ADAMTS12P58397 1594 aa13.77□□□□□ -0.21
VPS39-201ENST00000318006 SYTL4Q96C24 671 aaPredicted RBP13.76□□□□□ -0.21
VPS39-201ENST00000318006 G3V3G9 751 aa13.76□□□□□ -0.21
VPS39-201ENST00000318006 NEK4P51957 841 aa13.76□□□□□ -0.21
VPS39-201ENST00000318006 AKAP17AQ02040 695 aaKnown RBP13.76□□□□□ -0.21
VPS39-201ENST00000318006 PLEKHO1Q53GL0 409 aaPredicted RBP13.76□□□□□ -0.21
VPS39-201ENST00000318006 DCAF8Q5TAQ9 597 aa13.76□□□□□ -0.21
VPS39-201ENST00000318006 PDCL2Q8N4E4 241 aa13.76□□□□□ -0.21
VPS39-201ENST00000318006 ADGRL1O94910 1474 aa13.76□□□□□ -0.21
VPS39-201ENST00000318006 PCMTD1Q96MG8 357 aaPredicted RBP13.76□□□□□ -0.21
VPS39-201ENST00000318006 ZMYND15Q9H091 742 aa13.76□□□□□ -0.21
VPS39-201ENST00000318006 SLC26A8Q96RN1 970 aa13.76□□□□□ -0.21
VPS39-201ENST00000318006 SPC24Q8NBT2 197 aa13.75□□□□□ -0.21
VPS39-201ENST00000318006 SDF4Q9BRK5 362 aa13.75□□□□□ -0.21
VPS39-201ENST00000318006 SYNE3Q6ZMZ3 975 aa13.75□□□□□ -0.21
VPS39-201ENST00000318006 PROSER2Q86WR7 435 aaPredicted RBP13.75□□□□□ -0.21
VPS39-201ENST00000318006 GCC1Q96CN9 775 aa13.75□□□□□ -0.21
VPS39-201ENST00000318006 PTPRKQ15262 1439 aa13.74□□□□□ -0.21
VPS39-201ENST00000318006 ATF7IPQ6VMQ6 1270 aa13.74□□□□□ -0.21
VPS39-201ENST00000318006 FCHSD2O94868 740 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms