RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 SAFBQ15424 915 aaKnown RBP eCLIP15.13■□□□□ 0.01
USP38-201ENST00000307017 RBM33Q96EV2 1170 aaKnown RBP15.13■□□□□ 0.01
USP38-201ENST00000307017 TTC16Q8NEE8 873 aa15.13■□□□□ 0.01
USP38-201ENST00000307017 MYL6BP14649 208 aa15.12■□□□□ 0.01
USP38-201ENST00000307017 NUCB2P80303 420 aa15.12■□□□□ 0.01
USP38-201ENST00000307017 SURF6O75683 361 aaKnown RBP15.12■□□□□ 0.01
USP38-201ENST00000307017 ZHX1Q9UKY1 873 aaPredicted RBP15.12■□□□□ 0.01
USP38-201ENST00000307017 NUP133Q8WUM0 1156 aa15.11■□□□□ 0.01
USP38-201ENST00000307017 CCDC191Q8NCU4 936 aa15.11■□□□□ 0.01
USP38-201ENST00000307017 SPDYE4A6NLX3 237 aa15.11■□□□□ 0.01
USP38-201ENST00000307017 TICAM2Q86XR7 235 aa15.11■□□□□ 0.01
USP38-201ENST00000307017 UBTFL1P0CB47 393 aaPredicted RBP15.11■□□□□ 0.01
USP38-201ENST00000307017 CDC45O75419 566 aa15.11■□□□□ 0.01
USP38-201ENST00000307017 PRDM2Q13029 1718 aa15.1■□□□□ 0.01
USP38-201ENST00000307017 KRT18P05783 430 aaKnown RBP15.09■□□□□ 0.01
USP38-201ENST00000307017 LRRFIP2Q9Y608 721 aaKnown RBP15.09■□□□□ 0.01
USP38-201ENST00000307017 CCDC144AA2RUR9 1427 aa15.09■□□□□ 0.01
USP38-201ENST00000307017 CHMP4BP1P59074 171 aa15.09■□□□□ 0.01
USP38-201ENST00000307017 TNNT1P13805 278 aa15.09■□□□□ 0.01
USP38-201ENST00000307017 SLC4A8Q2Y0W8 1093 aa15.09■□□□□ 0.01
USP38-201ENST00000307017 DDX11Q96FC9 970 aa15.09■□□□□ 0.01
USP38-201ENST00000307017 RBM42Q9BTD8 480 aaKnown RBP15.09■□□□□ 0.01
USP38-201ENST00000307017 RUNDC1Q96C34 613 aa15.09■□□□□ 0.01
USP38-201ENST00000307017 CCDC184Q52MB2 194 aa15.08■□□□□ 0.01
USP38-201ENST00000307017 CNTROBQ8N137 903 aa15.08■□□□□ 0.01
USP38-201ENST00000307017 CDK5RAP3Q96JB5 506 aa15.08■□□□□ 0.01
USP38-201ENST00000307017 GRPEL1Q9HAV7 217 aa15.08■□□□□ 0.01
USP38-201ENST00000307017 FILIP1Q7Z7B0 1213 aa15.08■□□□□ 0
USP38-201ENST00000307017 NAT10Q9H0A0 1025 aaKnown RBP15.08■□□□□ 0
USP38-201ENST00000307017 KINO60870 393 aaKnown RBP15.08■□□□□ 0
USP38-201ENST00000307017 EXOSC9Q06265 439 aaKnown RBP15.08■□□□□ 0
USP38-201ENST00000307017 CCDC102AQ96A19 550 aa15.08■□□□□ 0
USP38-201ENST00000307017 ACBD3Q9H3P7 528 aa15.08■□□□□ 0
USP38-201ENST00000307017 POLR3GO15318 223 aaPredicted RBP15.08■□□□□ 0
USP38-201ENST00000307017 GPATCH11Q8N954 259 aa15.08■□□□□ 0
USP38-201ENST00000307017 MAGEC2Q9UBF1 373 aaPredicted RBP15.08■□□□□ 0
USP38-201ENST00000307017 EVC2Q86UK5 1308 aa15.08■□□□□ 0
USP38-201ENST00000307017 ME1P48163 572 aa15.07■□□□□ 0
USP38-201ENST00000307017 TNMDQ9H2S6 317 aa15.07■□□□□ 0
USP38-201ENST00000307017 MIS18AQ9NYP9 233 aa15.07■□□□□ 0
USP38-201ENST00000307017 SYCE3A1L190 88 aa15.07■□□□□ 0
USP38-201ENST00000307017 CHMP4AQ9BY43 222 aa15.07■□□□□ 0
USP38-201ENST00000307017 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.07■□□□□ 0
USP38-201ENST00000307017 TRMT1LQ7Z2T5 733 aaKnown RBP15.07■□□□□ 0
USP38-201ENST00000307017 CWC15Q9P013 229 aaKnown RBP15.07■□□□□ 0
USP38-201ENST00000307017 SMARCA5O60264 1052 aaPredicted RBP15.07■□□□□ 0
USP38-201ENST00000307017 DEF6Q9H4E7 631 aa15.07■□□□□ 0
USP38-201ENST00000307017 HDAC5Q9UQL6 1122 aa15.07■□□□□ 0
USP38-201ENST00000307017 RUSC2Q8N2Y8 1516 aa15.06■□□□□ 0
USP38-201ENST00000307017 GUCY1B3Q02153 619 aa15.06■□□□□ 0
USP38-201ENST00000307017 CWC27Q6UX04 472 aaKnown RBP15.06■□□□□ 0
USP38-201ENST00000307017 SERPINA10Q9UK55 444 aa15.06■□□□□ 0
USP38-201ENST00000307017 KIF7Q2M1P5 1343 aa15.06■□□□□ 0
USP38-201ENST00000307017 TTC39AQ5SRH9 613 aa15.06■□□□□ 0
USP38-201ENST00000307017 DHX8Q14562 1220 aaKnown RBP15.06■□□□□ 0
USP38-201ENST00000307017 SSBP05455 408 aaKnown RBP eCLIP15.06■□□□□ 0
USP38-201ENST00000307017 ISM2Q6H9L7 571 aa15.06■□□□□ 0
USP38-201ENST00000307017 NLRP2Q9NX02 1062 aa15.06■□□□□ 0
USP38-201ENST00000307017 STK38Q15208 465 aa15.05■□□□□ 0
USP38-201ENST00000307017 CCDC181Q5TID7 509 aa15.05■□□□□ 0
USP38-201ENST00000307017 CCDC113Q9H0I3 377 aa15.05■□□□□ 0
USP38-201ENST00000307017 STRN4Q9NRL3 753 aa15.05■□□□□ 0
USP38-201ENST00000307017 ZNF644Q9H582 1327 aaPredicted RBP15.05■□□□□ 0
USP38-201ENST00000307017 SSR1P43307 286 aaKnown RBP15.05■□□□□ -0
USP38-201ENST00000307017 XPCQ01831 940 aaPredicted RBP15.05■□□□□ -0
USP38-201ENST00000307017 ERC2O15083 957 aa15.04■□□□□ -0
USP38-201ENST00000307017 TERF1P54274 439 aa15.04■□□□□ -0
USP38-201ENST00000307017 FKBP4Q02790 459 aaKnown RBP eCLIP15.04■□□□□ -0
USP38-201ENST00000307017 MTHFSP49914 203 aa15.04■□□□□ -0
USP38-201ENST00000307017 SEPT7Q16181 437 aaKnown RBP15.04■□□□□ -0
USP38-201ENST00000307017 PHLDB1Q86UU1 1377 aa15.04■□□□□ -0
USP38-201ENST00000307017 BCCIPQ9P287 314 aaKnown RBP eCLIP15.04■□□□□ -0
USP38-201ENST00000307017 IL1RAPL2Q9NP60 686 aa15.04■□□□□ -0
USP38-201ENST00000307017 TRMT1Q9NXH9 659 aaKnown RBP15.04■□□□□ -0
USP38-201ENST00000307017 CCDC173Q0VFZ6 552 aa15.04■□□□□ -0
USP38-201ENST00000307017 BRMS1Q9HCU9 246 aa15.04■□□□□ -0
USP38-201ENST00000307017 EFCAB2Q5VUJ9 269 aa15.04■□□□□ -0
USP38-201ENST00000307017 DDX58O95786 925 aaKnown RBP15.03■□□□□ -0
USP38-201ENST00000307017 MATR3P43243 847 aaKnown RBP eCLIP15.03■□□□□ -0
USP38-201ENST00000307017 CDR1P51861 262 aa15.03■□□□□ -0
USP38-201ENST00000307017 IPO4Q8TEX9 1081 aaKnown RBP15.02■□□□□ -0
USP38-201ENST00000307017 NINLQ9Y2I6 1382 aa15.02■□□□□ -0
USP38-201ENST00000307017 RAPGEF2Q9Y4G8 1499 aa15.02■□□□□ -0
USP38-201ENST00000307017 NUTM1Q86Y26 1132 aa15.02■□□□□ -0
USP38-201ENST00000307017 FERMT3Q86UX7 667 aa15.02■□□□□ -0
USP38-201ENST00000307017 API5Q9BZZ5 524 aaKnown RBP15.02□□□□□ -0.01
USP38-201ENST00000307017 WIZO95785 1651 aa15.02□□□□□ -0.01
USP38-201ENST00000307017 SYCP1Q15431 976 aa15.02□□□□□ -0.01
USP38-201ENST00000307017 CNNM1Q9NRU3 951 aa15.01□□□□□ -0.01
USP38-201ENST00000307017 CCDC18Q5T9S5 1454 aa15.01□□□□□ -0.01
USP38-201ENST00000307017 CCDC82Q8N4S0 544 aa15.01□□□□□ -0.01
USP38-201ENST00000307017 PSMD1Q99460 953 aa15.01□□□□□ -0.01
USP38-201ENST00000307017 DCTN1Q14203 1278 aa15.01□□□□□ -0.01
USP38-201ENST00000307017 CCDC66A2RUB6 948 aa15□□□□□ -0.01
USP38-201ENST00000307017 RBM5P52756 815 aaKnown RBP eCLIP15□□□□□ -0.01
USP38-201ENST00000307017 PDCL3Q9H2J4 239 aa15□□□□□ -0.01
USP38-201ENST00000307017 KIAA0754O94854 1291 aa15□□□□□ -0.01
USP38-201ENST00000307017 BICDL1Q6ZP65 573 aa15□□□□□ -0.01
USP38-201ENST00000307017 CCDC112Q8NEF3 446 aa15□□□□□ -0.01
USP38-201ENST00000307017 SMARCE1Q969G3 411 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms