RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 IBTKQ9P2D0 1353 aaPredicted RBP13.58□□□□□ -0.24
ZNF558-201ENST00000301475 K7ELQ4 463 aaPredicted RBP13.58□□□□□ -0.24
ZNF558-201ENST00000301475 PTMSP20962 102 aa13.58□□□□□ -0.24
ZNF558-201ENST00000301475 SLC12A5Q9H2X9 1139 aa13.58□□□□□ -0.24
ZNF558-201ENST00000301475 SBNO2Q9Y2G9 1366 aa13.57□□□□□ -0.24
ZNF558-201ENST00000301475 CALD1Q05682 793 aaKnown RBP13.57□□□□□ -0.24
ZNF558-201ENST00000301475 KLHL40Q2TBA0 621 aa13.57□□□□□ -0.24
ZNF558-201ENST00000301475 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.57□□□□□ -0.24
ZNF558-201ENST00000301475 MYOM2P54296 1465 aa13.56□□□□□ -0.24
ZNF558-201ENST00000301475 KIF3BO15066 747 aa13.56□□□□□ -0.24
ZNF558-201ENST00000301475 MSNP26038 577 aaKnown RBP13.56□□□□□ -0.24
ZNF558-201ENST00000301475 NOB1Q9ULX3 412 aaKnown RBP13.56□□□□□ -0.24
ZNF558-201ENST00000301475 DDX49Q9Y6V7 483 aaKnown RBP13.56□□□□□ -0.24
ZNF558-201ENST00000301475 NOS1P29475 1434 aa13.56□□□□□ -0.24
ZNF558-201ENST00000301475 CD109Q6YHK3 1445 aa13.56□□□□□ -0.24
ZNF558-201ENST00000301475 SLC24A1O60721 1099 aa13.56□□□□□ -0.24
ZNF558-201ENST00000301475 TET3O43151 1660 aa13.56□□□□□ -0.24
ZNF558-201ENST00000301475 ADGRL1O94910 1474 aa13.56□□□□□ -0.24
ZNF558-201ENST00000301475 RAPGEF3O95398 923 aa13.56□□□□□ -0.24
ZNF558-201ENST00000301475 BAG4O95429 457 aaKnown RBP13.56□□□□□ -0.24
ZNF558-201ENST00000301475 CT47B1P0C2W7 299 aaPredicted RBP13.56□□□□□ -0.24
ZNF558-201ENST00000301475 U2AF1L5P0DN76 240 aaPredicted RBP13.56□□□□□ -0.24
ZNF558-201ENST00000301475 U2AF1Q01081 240 aaKnown RBP eCLIP13.56□□□□□ -0.24
ZNF558-201ENST00000301475 PRDM4Q9UKN5 801 aa13.56□□□□□ -0.24
ZNF558-201ENST00000301475 BMP2KLQ5H9B9 411 aa13.55□□□□□ -0.24
ZNF558-201ENST00000301475 CLEC17AQ6ZS10 378 aa13.55□□□□□ -0.24
ZNF558-201ENST00000301475 CHD1LQ86WJ1 897 aa13.55□□□□□ -0.24
ZNF558-201ENST00000301475 USP32Q8NFA0 1604 aa13.55□□□□□ -0.24
ZNF558-201ENST00000301475 R3HCC1Q9Y3T6 440 aaKnown RBP13.55□□□□□ -0.24
ZNF558-201ENST00000301475 ABCC1P33527 1531 aa13.55□□□□□ -0.24
ZNF558-201ENST00000301475 DEPDC5O75140 1603 aa13.55□□□□□ -0.24
ZNF558-201ENST00000301475 ZC3H13Q5T200 1668 aaKnown RBP13.54□□□□□ -0.24
ZNF558-201ENST00000301475 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.54□□□□□ -0.24
ZNF558-201ENST00000301475 IFT172Q9UG01 1749 aa13.54□□□□□ -0.24
ZNF558-201ENST00000301475 TERF1P54274 439 aa13.54□□□□□ -0.24
ZNF558-201ENST00000301475 FAM13BQ9NYF5 915 aa13.54□□□□□ -0.24
ZNF558-201ENST00000301475 INO80Q9ULG1 1556 aaPredicted RBP13.54□□□□□ -0.24
ZNF558-201ENST00000301475 ARHGAP31Q2M1Z3 1444 aa13.53□□□□□ -0.24
ZNF558-201ENST00000301475 TBC1D9Q6ZT07 1266 aa13.53□□□□□ -0.24
ZNF558-201ENST00000301475 ANP32BQ92688 251 aaKnown RBP13.53□□□□□ -0.24
ZNF558-201ENST00000301475 CFAP53Q96M91 514 aa13.53□□□□□ -0.24
ZNF558-201ENST00000301475 GOLGA6L22H0YM25 854 aa13.53□□□□□ -0.24
ZNF558-201ENST00000301475 NCBP3Q53F19 620 aaKnown RBP13.53□□□□□ -0.24
ZNF558-201ENST00000301475 NEURL4Q96JN8 1562 aa13.53□□□□□ -0.24
ZNF558-201ENST00000301475 MROH2AA6NES4 1674 aa13.53□□□□□ -0.24
ZNF558-201ENST00000301475 ZNF445P59923 1031 aa13.53□□□□□ -0.24
ZNF558-201ENST00000301475 TRIM35Q9UPQ4 493 aa13.52□□□□□ -0.24
ZNF558-201ENST00000301475 QRICH2Q9H0J4 1663 aa13.52□□□□□ -0.25
ZNF558-201ENST00000301475 XPCQ01831 940 aaPredicted RBP13.52□□□□□ -0.25
ZNF558-201ENST00000301475 ABCC11Q96J66 1382 aa13.52□□□□□ -0.25
ZNF558-201ENST00000301475 ZFYVE16Q7Z3T8 1539 aa13.51□□□□□ -0.25
ZNF558-201ENST00000301475 CAVIN1Q6NZI2 390 aaKnown RBP13.51□□□□□ -0.25
ZNF558-201ENST00000301475 PDLIM2Q96JY6 352 aa13.51□□□□□ -0.25
ZNF558-201ENST00000301475 RBSNQ9H1K0 784 aa13.51□□□□□ -0.25
ZNF558-201ENST00000301475 NOL7Q9UMY1 257 aaKnown RBP13.51□□□□□ -0.25
ZNF558-201ENST00000301475 ZSCAN23Q3MJ62 389 aa13.51□□□□□ -0.25
ZNF558-201ENST00000301475 ZNF500O60304 480 aaPredicted RBP13.5□□□□□ -0.25
ZNF558-201ENST00000301475 PPIP5K1Q6PFW1 1433 aa13.5□□□□□ -0.25
ZNF558-201ENST00000301475 PPRC1Q5VV67 1664 aaKnown RBP13.5□□□□□ -0.25
ZNF558-201ENST00000301475 FAM69CQ0P6D2 419 aa13.5□□□□□ -0.25
ZNF558-201ENST00000301475 MCTP1Q6DN14 999 aa13.5□□□□□ -0.25
ZNF558-201ENST00000301475 GGT6Q6P531 493 aa13.5□□□□□ -0.25
ZNF558-201ENST00000301475 NRXN1Q9ULB1 1477 aa13.5□□□□□ -0.25
ZNF558-201ENST00000301475 UQCRHLA0A096LP55 91 aa13.5□□□□□ -0.25
ZNF558-201ENST00000301475 UQCRHP07919 91 aa13.5□□□□□ -0.25
ZNF558-201ENST00000301475 TMPOP42166 694 aaKnown RBP13.5□□□□□ -0.25
ZNF558-201ENST00000301475 PKP1Q13835 747 aa13.5□□□□□ -0.25
ZNF558-201ENST00000301475 HS1BP3Q53T59 392 aa13.5□□□□□ -0.25
ZNF558-201ENST00000301475 PLEKHF1Q96S99 279 aa13.5□□□□□ -0.25
ZNF558-201ENST00000301475 TRAK1Q9UPV9 953 aa13.5□□□□□ -0.25
ZNF558-201ENST00000301475 KIF1BO60333 1816 aa13.5□□□□□ -0.25
ZNF558-201ENST00000301475 VWDEQ8N2E2 1590 aa13.49□□□□□ -0.25
ZNF558-201ENST00000301475 ANKRD45Q5TZF3 282 aa13.49□□□□□ -0.25
ZNF558-201ENST00000301475 LMBRD1Q9NUN5 540 aa13.49□□□□□ -0.25
ZNF558-201ENST00000301475 MED14O60244 1454 aa13.49□□□□□ -0.25
ZNF558-201ENST00000301475 KIF16BQ96L93 1317 aa13.49□□□□□ -0.25
ZNF558-201ENST00000301475 C1orf115Q9H7X2 142 aa13.48□□□□□ -0.25
ZNF558-201ENST00000301475 CYP2E1P05181 493 aaPredicted RBP13.48□□□□□ -0.25
ZNF558-201ENST00000301475 NCLP19338 710 aaKnown RBP13.48□□□□□ -0.25
ZNF558-201ENST00000301475 PRIM1P49642 420 aaKnown RBP13.48□□□□□ -0.25
ZNF558-201ENST00000301475 ARID3AQ99856 593 aa13.48□□□□□ -0.25
ZNF558-201ENST00000301475 ABCA9Q8IUA7 1624 aa13.47□□□□□ -0.25
ZNF558-201ENST00000301475 MAP7D2Q96T17 732 aa13.47□□□□□ -0.25
ZNF558-201ENST00000301475 SETBP1Q9Y6X0 1596 aa13.47□□□□□ -0.25
ZNF558-201ENST00000301475 RBM27Q9P2N5 1060 aaKnown RBP13.47□□□□□ -0.25
ZNF558-201ENST00000301475 U2SURPO15042 1029 aaKnown RBP13.46□□□□□ -0.25
ZNF558-201ENST00000301475 ZKSCAN5Q9Y2L8 839 aa13.46□□□□□ -0.25
ZNF558-201ENST00000301475 COL3A1P02461 1466 aaPredicted RBP13.46□□□□□ -0.25
ZNF558-201ENST00000301475 GPT2Q8TD30 523 aa13.45□□□□□ -0.26
ZNF558-201ENST00000301475 IPO8O15397 1037 aaKnown RBP13.45□□□□□ -0.26
ZNF558-201ENST00000301475 ADGRB1O14514 1584 aa13.45□□□□□ -0.26
ZNF558-201ENST00000301475 MROH1Q8NDA8 1641 aa13.45□□□□□ -0.26
ZNF558-201ENST00000301475 GSPT1P15170 499 aaKnown RBP13.45□□□□□ -0.26
ZNF558-201ENST00000301475 SIRT2Q8IXJ6 389 aa13.45□□□□□ -0.26
ZNF558-201ENST00000301475 IL16Q14005 1332 aa13.45□□□□□ -0.26
ZNF558-201ENST00000301475 GCC1Q96CN9 775 aa13.44□□□□□ -0.26
ZNF558-201ENST00000301475 CHAMP1Q96JM3 812 aa13.44□□□□□ -0.26
ZNF558-201ENST00000301475 ZBTB7BO15156 539 aaPredicted RBP13.44□□□□□ -0.26
ZNF558-201ENST00000301475 CDC45O75419 566 aa13.44□□□□□ -0.26
ZNF558-201ENST00000301475 ATP7AQ04656 1500 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms