RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 WDR63Q8IWG1 891 aa13.98□□□□□ -0.17
SNIP1-201ENST00000296215 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.98□□□□□ -0.17
SNIP1-201ENST00000296215 CCNB3Q8WWL7 1395 aa13.98□□□□□ -0.17
SNIP1-201ENST00000296215 RRP12Q5JTH9 1297 aaKnown RBP13.98□□□□□ -0.17
SNIP1-201ENST00000296215 PPP1R9BQ96SB3 815 aa13.98□□□□□ -0.17
SNIP1-201ENST00000296215 TTC12Q9H892 705 aaPredicted RBP13.98□□□□□ -0.17
SNIP1-201ENST00000296215 V9GYY5 206 aaPredicted RBP13.97□□□□□ -0.17
SNIP1-201ENST00000296215 RAB3GAP2Q9H2M9 1393 aa13.97□□□□□ -0.17
SNIP1-201ENST00000296215 FAM212AQ96EL1 285 aa13.97□□□□□ -0.17
SNIP1-201ENST00000296215 CT47B1P0C2W7 299 aaPredicted RBP13.97□□□□□ -0.17
SNIP1-201ENST00000296215 EZRP15311 586 aaKnown RBP13.97□□□□□ -0.17
SNIP1-201ENST00000296215 COG6Q9Y2V7 657 aa13.97□□□□□ -0.17
SNIP1-201ENST00000296215 HNRNPH2P55795 449 aaKnown RBP13.97□□□□□ -0.17
SNIP1-201ENST00000296215 CCDC196A0A1B0GTZ2 297 aa13.96□□□□□ -0.17
SNIP1-201ENST00000296215 CXorf56Q9H5V9 222 aa13.96□□□□□ -0.17
SNIP1-201ENST00000296215 DCTN1Q14203 1278 aa13.96□□□□□ -0.17
SNIP1-201ENST00000296215 ZSCAN23Q3MJ62 389 aa13.96□□□□□ -0.17
SNIP1-201ENST00000296215 CEP57Q86XR8 500 aa13.96□□□□□ -0.17
SNIP1-201ENST00000296215 WRNQ14191 1432 aaPredicted RBP eCLIP13.96□□□□□ -0.17
SNIP1-201ENST00000296215 CLNS1AP54105 237 aaKnown RBP13.96□□□□□ -0.18
SNIP1-201ENST00000296215 DHX16O60231 1041 aaKnown RBP13.95□□□□□ -0.18
SNIP1-201ENST00000296215 CCDC70Q6NSX1 233 aa13.95□□□□□ -0.18
SNIP1-201ENST00000296215 CLUAP1Q96AJ1 413 aa13.95□□□□□ -0.18
SNIP1-201ENST00000296215 TERF2Q15554 542 aa13.95□□□□□ -0.18
SNIP1-201ENST00000296215 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.95□□□□□ -0.18
SNIP1-201ENST00000296215 ADCY5O95622 1261 aa13.95□□□□□ -0.18
SNIP1-201ENST00000296215 RSF1Q96T23 1441 aaPredicted RBP13.95□□□□□ -0.18
SNIP1-201ENST00000296215 CCDC184Q52MB2 194 aa13.94□□□□□ -0.18
SNIP1-201ENST00000296215 CHMP3Q9Y3E7 222 aa13.94□□□□□ -0.18
SNIP1-201ENST00000296215 SETD5Q9C0A6 1442 aa13.94□□□□□ -0.18
SNIP1-201ENST00000296215 NLRP13Q86W25 1043 aa13.94□□□□□ -0.18
SNIP1-201ENST00000296215 INCENPQ9NQS7 918 aa13.94□□□□□ -0.18
SNIP1-201ENST00000296215 K7ELQ4 463 aaPredicted RBP13.94□□□□□ -0.18
SNIP1-201ENST00000296215 TTC36A6NLP5 189 aa13.93□□□□□ -0.18
SNIP1-201ENST00000296215 HMMRO75330 724 aa13.93□□□□□ -0.18
SNIP1-201ENST00000296215 SLC20A2Q08357 652 aa13.93□□□□□ -0.18
SNIP1-201ENST00000296215 DBN1Q16643 649 aa13.93□□□□□ -0.18
SNIP1-201ENST00000296215 NEK11Q8NG66 645 aa13.93□□□□□ -0.18
SNIP1-201ENST00000296215 PIBF1Q8WXW3 757 aa13.93□□□□□ -0.18
SNIP1-201ENST00000296215 GOPCQ9HD26 462 aa13.93□□□□□ -0.18
SNIP1-201ENST00000296215 SMTNL1A8MU46 457 aa13.93□□□□□ -0.18
SNIP1-201ENST00000296215 RAD51AP2Q09MP3 1159 aa13.93□□□□□ -0.18
SNIP1-201ENST00000296215 NBPF20Q3BBV1 942 aa13.93□□□□□ -0.18
SNIP1-201ENST00000296215 CEP135Q66GS9 1140 aa13.92□□□□□ -0.18
SNIP1-201ENST00000296215 KDM2AQ9Y2K7 1162 aa13.92□□□□□ -0.18
SNIP1-201ENST00000296215 MYO1CO00159 1063 aa13.92□□□□□ -0.18
SNIP1-201ENST00000296215 SSFA2P28290 1259 aa13.91□□□□□ -0.18
SNIP1-201ENST00000296215 MCTP2Q6DN12 878 aa13.91□□□□□ -0.18
SNIP1-201ENST00000296215 VEZTQ9HBM0 779 aa13.91□□□□□ -0.18
SNIP1-201ENST00000296215 RAI14Q9P0K7 980 aa13.91□□□□□ -0.18
SNIP1-201ENST00000296215 KCNG1Q9UIX4 513 aa13.91□□□□□ -0.18
SNIP1-201ENST00000296215 GOLGA6L7A0A1B0GV03 622 aa13.91□□□□□ -0.18
SNIP1-201ENST00000296215 PRIM1P49642 420 aaKnown RBP13.91□□□□□ -0.18
SNIP1-201ENST00000296215 ITPRIPQ8IWB1 547 aa13.91□□□□□ -0.18
SNIP1-201ENST00000296215 LRSAM1Q6UWE0 723 aa13.91□□□□□ -0.18
SNIP1-201ENST00000296215 SLC24A3Q9HC58 644 aa13.91□□□□□ -0.18
SNIP1-201ENST00000296215 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.9□□□□□ -0.18
SNIP1-201ENST00000296215 FEZ2Q9UHY8 353 aaPredicted RBP13.9□□□□□ -0.18
SNIP1-201ENST00000296215 GRIPAP1Q4V328 841 aa13.9□□□□□ -0.18
SNIP1-201ENST00000296215 MRFAP1L1Q96HT8 127 aa13.9□□□□□ -0.18
SNIP1-201ENST00000296215 RRP15Q9Y3B9 282 aaKnown RBP13.9□□□□□ -0.18
SNIP1-201ENST00000296215 PEX19P40855 299 aa13.9□□□□□ -0.18
SNIP1-201ENST00000296215 ERC1Q8IUD2 1116 aa13.9□□□□□ -0.18
SNIP1-201ENST00000296215 CHIC2Q9UKJ5 165 aa13.9□□□□□ -0.18
SNIP1-201ENST00000296215 GUCY2CP25092 1073 aa13.89□□□□□ -0.19
SNIP1-201ENST00000296215 C8orf34Q49A92 452 aa13.89□□□□□ -0.19
SNIP1-201ENST00000296215 CARD11Q9BXL7 1154 aa13.89□□□□□ -0.19
SNIP1-201ENST00000296215 CWC22Q9HCG8 908 aaKnown RBP13.89□□□□□ -0.19
SNIP1-201ENST00000296215 CCDC192P0DO97 292 aa13.89□□□□□ -0.19
SNIP1-201ENST00000296215 ZRSR2Q15696 482 aaKnown RBP13.89□□□□□ -0.19
SNIP1-201ENST00000296215 NBPF8Q3BBV2 869 aa13.89□□□□□ -0.19
SNIP1-201ENST00000296215 RNF187Q5TA31 235 aaPredicted RBP13.89□□□□□ -0.19
SNIP1-201ENST00000296215 DZIP1Q86YF9 867 aaKnown RBP13.89□□□□□ -0.19
SNIP1-201ENST00000296215 RSRC1Q96IZ7 334 aaKnown RBP13.89□□□□□ -0.19
SNIP1-201ENST00000296215 SYT10Q6XYQ8 523 aa13.89□□□□□ -0.19
SNIP1-201ENST00000296215 PHLDB1Q86UU1 1377 aa13.89□□□□□ -0.19
SNIP1-201ENST00000296215 RNF168Q8IYW5 571 aaPredicted RBP13.89□□□□□ -0.19
SNIP1-201ENST00000296215 BAG4O95429 457 aaKnown RBP13.88□□□□□ -0.19
SNIP1-201ENST00000296215 NBPF3Q9H094 633 aa13.88□□□□□ -0.19
SNIP1-201ENST00000296215 UVSSAQ2YD98 709 aa13.88□□□□□ -0.19
SNIP1-201ENST00000296215 MICALCLQ6ZW33 695 aa13.88□□□□□ -0.19
SNIP1-201ENST00000296215 LRRCC1Q9C099 1032 aa13.88□□□□□ -0.19
SNIP1-201ENST00000296215 GOLGA3Q08378 1498 aa13.88□□□□□ -0.19
SNIP1-201ENST00000296215 PPP1R12AO14974 1030 aaPredicted RBP13.87□□□□□ -0.19
SNIP1-201ENST00000296215 SLU7O95391 586 aaKnown RBP13.87□□□□□ -0.19
SNIP1-201ENST00000296215 RLBP1P12271 317 aa13.87□□□□□ -0.19
SNIP1-201ENST00000296215 NBPF9Q3BBW0 867 aa13.87□□□□□ -0.19
SNIP1-201ENST00000296215 POLD1P28340 1107 aa13.87□□□□□ -0.19
SNIP1-201ENST00000296215 SEMA3FQ13275 785 aa13.87□□□□□ -0.19
SNIP1-201ENST00000296215 CDCA7LQ96GN5 454 aa13.87□□□□□ -0.19
SNIP1-201ENST00000296215 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.87□□□□□ -0.19
SNIP1-201ENST00000296215 EBAG9O00559 213 aa13.87□□□□□ -0.19
SNIP1-201ENST00000296215 ERLIN2O94905 339 aa13.87□□□□□ -0.19
SNIP1-201ENST00000296215 NAT10Q9H0A0 1025 aaKnown RBP13.87□□□□□ -0.19
SNIP1-201ENST00000296215 DONSONQ9NYP3 566 aa13.87□□□□□ -0.19
SNIP1-201ENST00000296215 RBM27Q9P2N5 1060 aaKnown RBP13.87□□□□□ -0.19
SNIP1-201ENST00000296215 MYBBP1AQ9BQG0 1328 aaKnown RBP13.87□□□□□ -0.19
SNIP1-201ENST00000296215 JAKMIP3Q5VZ66 844 aa13.86□□□□□ -0.19
SNIP1-201ENST00000296215 TRDNQ13061 729 aa13.86□□□□□ -0.19
SNIP1-201ENST00000296215 SMARCC1Q92922 1105 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms