RNA–Protein interactions for RNA: ENST00000288022.1

PDF-201, Transcript of peptide deformylase, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDF, Length 1,158 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDF-201ENST00000288022 MARF1Q9Y4F3 1742 aaKnown RBP35.42■■■■□ 3.26
PDF-201ENST00000288022 ABCA3Q99758 1704 aa35.39■■■■□ 3.26
PDF-201ENST00000288022 TESK2Q96S53 571 aa35.36■■■■□ 3.25
PDF-201ENST00000288022 SLC24A1O60721 1099 aa35.34■■■■□ 3.25
PDF-201ENST00000288022 NUTM2GQ5VZR2 741 aa35.33■■■■□ 3.25
PDF-201ENST00000288022 USP21Q9UK80 565 aa35.33■■■■□ 3.25
PDF-201ENST00000288022 USP6P35125 1406 aa35.32■■■■□ 3.25
PDF-201ENST00000288022 ABTB2Q8N961 1025 aa35.31■■■■□ 3.24
PDF-201ENST00000288022 TMC1Q8TDI8 760 aa35.31■■■■□ 3.24
PDF-201ENST00000288022 FNBP4Q8N3X1 1017 aaPredicted RBP35.3■■■■□ 3.24
PDF-201ENST00000288022 BRD4O60885 1362 aaPredicted RBP35.29■■■■□ 3.24
PDF-201ENST00000288022 QTRT2Q9H974 415 aaKnown RBP35.29■■■■□ 3.24
PDF-201ENST00000288022 AKAP12Q02952 1782 aa35.28■■■■□ 3.24
PDF-201ENST00000288022 CRYBG1Q9Y4K1 1723 aa35.27■■■■□ 3.24
PDF-201ENST00000288022 ZNF692Q9BU19 519 aaPredicted RBP35.27■■■■□ 3.24
PDF-201ENST00000288022 PUS7Q96PZ0 661 aaKnown RBP35.26■■■■□ 3.24
PDF-201ENST00000288022 RXRBP28702 533 aa35.25■■■■□ 3.23
PDF-201ENST00000288022 TMF1P82094 1093 aa35.25■■■■□ 3.23
PDF-201ENST00000288022 SOCS7O14512 581 aa35.24■■■■□ 3.23
PDF-201ENST00000288022 KTN1Q86UP2 1357 aaKnown RBP35.24■■■■□ 3.23
PDF-201ENST00000288022 PHRF1Q9P1Y6 1649 aaKnown RBP35.23■■■■□ 3.23
PDF-201ENST00000288022 CPSF1Q10570 1443 aaKnown RBP35.23■■■■□ 3.23
PDF-201ENST00000288022 SLC12A5Q9H2X9 1139 aa35.22■■■■□ 3.23
PDF-201ENST00000288022 TRPC5Q9UL62 973 aaPredicted RBP35.22■■■■□ 3.23
PDF-201ENST00000288022 NLRP13Q86W25 1043 aa35.21■■■■□ 3.23
PDF-201ENST00000288022 BCL9LQ86UU0 1499 aa35.21■■■■□ 3.23
PDF-201ENST00000288022 SLIT2O94813 1529 aa35.2■■■■□ 3.23
PDF-201ENST00000288022 PLCH1Q4KWH8 1693 aa35.2■■■■□ 3.23
PDF-201ENST00000288022 SSH2Q76I76 1423 aa35.19■■■■□ 3.22
PDF-201ENST00000288022 HDGFL2Q7Z4V5 671 aaPredicted RBP35.19■■■■□ 3.22
PDF-201ENST00000288022 FAM83GA6ND36 823 aa35.18■■■■□ 3.22
PDF-201ENST00000288022 MON2Q7Z3U7 1717 aa35.18■■■■□ 3.22
PDF-201ENST00000288022 TTC21BQ7Z4L5 1316 aa35.17■■■■□ 3.22
PDF-201ENST00000288022 NLRP6P59044 892 aa35.17■■■■□ 3.22
PDF-201ENST00000288022 RBM6P78332 1123 aaKnown RBP35.17■■■■□ 3.22
PDF-201ENST00000288022 UNC5CLQ8IV45 518 aa35.16■■■■□ 3.22
PDF-201ENST00000288022 TERF2IPQ9NYB0 399 aa35.16■■■■□ 3.22
PDF-201ENST00000288022 NRKQ7Z2Y5 1582 aa35.16■■■■□ 3.22
PDF-201ENST00000288022 CD163L1Q9NR16 1453 aa35.16■■■■□ 3.22
PDF-201ENST00000288022 ATRNO75882 1429 aa35.15■■■■□ 3.22
PDF-201ENST00000288022 TNKS1BP1Q9C0C2 1729 aaKnown RBP35.15■■■■□ 3.22
PDF-201ENST00000288022 EIF4G2P78344 907 aaKnown RBP eCLIP35.15■■■■□ 3.22
PDF-201ENST00000288022 PRDM11Q9NQV5 511 aa35.15■■■■□ 3.22
PDF-201ENST00000288022 PIK3C2AO00443 1686 aa35.14■■■■□ 3.22
PDF-201ENST00000288022 NINLQ9Y2I6 1382 aa35.14■■■■□ 3.22
PDF-201ENST00000288022 USP19O94966 1318 aa35.14■■■■□ 3.22
PDF-201ENST00000288022 TTC21AQ8NDW8 1320 aa35.14■■■■□ 3.22
PDF-201ENST00000288022 CDCA8Q53HL2 280 aa35.14■■■■□ 3.22
PDF-201ENST00000288022 COL14A1Q05707 1796 aaKnown RBP35.14■■■■□ 3.22
PDF-201ENST00000288022 NWD2Q9ULI1 1742 aa35.14■■■■□ 3.22
PDF-201ENST00000288022 ZC3H6P61129 1189 aaKnown RBP35.13■■■■□ 3.21
PDF-201ENST00000288022 KIAA0232Q92628 1395 aa35.12■■■■□ 3.21
PDF-201ENST00000288022 SUGP2Q8IX01 1082 aaKnown RBP eCLIP35.11■■■■□ 3.21
PDF-201ENST00000288022 A0A1W2PP64 1363 aa35.11■■■■□ 3.21
PDF-201ENST00000288022 HSPA5P11021 654 aaKnown RBP35.09■■■■□ 3.21
PDF-201ENST00000288022 BTG4Q9NY30 223 aa35.09■■■■□ 3.21
PDF-201ENST00000288022 CDK12Q9NYV4 1490 aaPredicted RBP35.09■■■■□ 3.21
PDF-201ENST00000288022 GCP02774 474 aa35.08■■■■□ 3.21
PDF-201ENST00000288022 CHRNA2Q15822 529 aa35.07■■■■□ 3.2
PDF-201ENST00000288022 CCDC9Q9Y3X0 531 aaKnown RBP35.06■■■■□ 3.2
PDF-201ENST00000288022 EDC4Q6P2E9 1401 aaKnown RBP35.06■■■■□ 3.2
PDF-201ENST00000288022 GJD4Q96KN9 370 aaPredicted RBP35.05■■■■□ 3.2
PDF-201ENST00000288022 SLIT3O75094 1523 aa35.04■■■■□ 3.2
PDF-201ENST00000288022 NRAPQ86VF7 1730 aa35.03■■■■□ 3.2
PDF-201ENST00000288022 RGS12O14924 1447 aa35.03■■■■□ 3.2
PDF-201ENST00000288022 VPS72Q15906 364 aa35.02■■■■□ 3.2
PDF-201ENST00000288022 ZBTB7CA1YPR0 619 aa35.01■■■■□ 3.2
PDF-201ENST00000288022 NME9Q86XW9 330 aa35.01■■■■□ 3.2
PDF-201ENST00000288022 CPDO75976 1380 aa35■■■■□ 3.19
PDF-201ENST00000288022 ANKRD36BQ8N2N9 1353 aa35■■■■□ 3.19
PDF-201ENST00000288022 SOX12O15370 315 aa34.99■■■■□ 3.19
PDF-201ENST00000288022 POLR3GLQ9BT43 218 aa34.99■■■■□ 3.19
PDF-201ENST00000288022 ZRANB1Q9UGI0 708 aa34.98■■■■□ 3.19
PDF-201ENST00000288022 GLI3P10071 1580 aa34.98■■■■□ 3.19
PDF-201ENST00000288022 KCNH5Q8NCM2 988 aa34.97■■■■□ 3.19
PDF-201ENST00000288022 STRN4Q9NRL3 753 aa34.95■■■■□ 3.19
PDF-201ENST00000288022 MYOM1P52179 1685 aa34.95■■■■□ 3.18
PDF-201ENST00000288022 USP31Q70CQ4 1352 aa34.94■■■■□ 3.18
PDF-201ENST00000288022 EVA1CP58658 441 aa34.92■■■■□ 3.18
PDF-201ENST00000288022 USP54Q70EL1 1684 aa34.92■■■■□ 3.18
PDF-201ENST00000288022 LMO7Q8WWI1 1683 aa34.91■■■■□ 3.18
PDF-201ENST00000288022 CAMTA1Q9Y6Y1 1673 aa34.9■■■■□ 3.18
PDF-201ENST00000288022 NFAT5O94916 1531 aa34.87■■■■□ 3.17
PDF-201ENST00000288022 AATKQ6ZMQ8 1374 aa34.87■■■■□ 3.17
PDF-201ENST00000288022 SPATA31A5Q5VU36 1347 aa34.85■■■■□ 3.17
PDF-201ENST00000288022 SPATA31A7Q8IWB4 1347 aa34.85■■■■□ 3.17
PDF-201ENST00000288022 ARHGEF25Q86VW2 580 aa34.85■■■■□ 3.17
PDF-201ENST00000288022 OVOS2A0A0J9YW53 1432 aa34.84■■■■□ 3.17
PDF-201ENST00000288022 OVOS2Q6IE36 1432 aa34.84■■■■□ 3.17
PDF-201ENST00000288022 A0A0G2JS52 829 aa34.84■■■■□ 3.17
PDF-201ENST00000288022 MYT1Q01538 1121 aa34.84■■■■□ 3.17
PDF-201ENST00000288022 COG3Q96JB2 828 aa34.83■■■■□ 3.17
PDF-201ENST00000288022 FAM98CQ17RN3 349 aaKnown RBP34.82■■■■□ 3.16
PDF-201ENST00000288022 SEPT12Q8IYM1 358 aa34.82■■■■□ 3.16
PDF-201ENST00000288022 COL5A2P05997 1499 aaPredicted RBP34.81■■■■□ 3.16
PDF-201ENST00000288022 COL18A1P39060 1754 aa34.8■■■■□ 3.16
PDF-201ENST00000288022 LARP1Q6PKG0 1096 aaKnown RBP34.8■■■■□ 3.16
PDF-201ENST00000288022 SPATA31A1Q5TZJ5 1347 aa34.8■■■■□ 3.16
PDF-201ENST00000288022 USP35Q9P2H5 1018 aa34.79■■■■□ 3.16
PDF-201ENST00000288022 NSD3Q9BZ95 1437 aa34.79■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms