RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 CCDC173Q0VFZ6 552 aa16.5■□□□□ 0.23
NUP54-201ENST00000264883 SPATA31D1Q6ZQQ2 1576 aa16.5■□□□□ 0.23
NUP54-201ENST00000264883 RPGRIP1LQ68CZ1 1315 aa16.49■□□□□ 0.23
NUP54-201ENST00000264883 ADGRF5Q8IZF2 1346 aa16.49■□□□□ 0.23
NUP54-201ENST00000264883 IDI1Q13907 227 aa16.49■□□□□ 0.23
NUP54-201ENST00000264883 FAM13BQ9NYF5 915 aa16.49■□□□□ 0.23
NUP54-201ENST00000264883 FGD1P98174 961 aa16.49■□□□□ 0.23
NUP54-201ENST00000264883 SPINK5Q9NQ38 1064 aaPredicted RBP16.49■□□□□ 0.23
NUP54-201ENST00000264883 TMEM131LA2VDJ0 1609 aa16.48■□□□□ 0.23
NUP54-201ENST00000264883 CANXP27824 592 aaKnown RBP16.48■□□□□ 0.23
NUP54-201ENST00000264883 SMAP1Q8IYB5 467 aaPredicted RBP16.48■□□□□ 0.23
NUP54-201ENST00000264883 NEXMIFQ5QGS0 1516 aa16.48■□□□□ 0.23
NUP54-201ENST00000264883 MSNP26038 577 aaKnown RBP16.48■□□□□ 0.23
NUP54-201ENST00000264883 FBXO31Q5XUX0 539 aaPredicted RBP16.48■□□□□ 0.23
NUP54-201ENST00000264883 PPP1R9BQ96SB3 815 aa16.47■□□□□ 0.23
NUP54-201ENST00000264883 USP32Q8NFA0 1604 aa16.47■□□□□ 0.23
NUP54-201ENST00000264883 SETBP1Q9Y6X0 1596 aa16.47■□□□□ 0.23
NUP54-201ENST00000264883 MLECQ14165 292 aa16.46■□□□□ 0.23
NUP54-201ENST00000264883 CHGAP10645 457 aaKnown RBP16.46■□□□□ 0.23
NUP54-201ENST00000264883 WWC1Q8IX03 1113 aa16.46■□□□□ 0.23
NUP54-201ENST00000264883 COG6Q9Y2V7 657 aa16.46■□□□□ 0.23
NUP54-201ENST00000264883 SHPRHQ149N8 1683 aa16.46■□□□□ 0.22
NUP54-201ENST00000264883 ZNF692Q9BU19 519 aaPredicted RBP16.45■□□□□ 0.22
NUP54-201ENST00000264883 C22orf23Q9BZE7 217 aa16.45■□□□□ 0.22
NUP54-201ENST00000264883 MYO5BQ9ULV0 1848 aa16.45■□□□□ 0.22
NUP54-201ENST00000264883 IQSEC2Q5JU85 1478 aa16.45■□□□□ 0.22
NUP54-201ENST00000264883 SKOR2Q2VWA4 1001 aaPredicted RBP16.45■□□□□ 0.22
NUP54-201ENST00000264883 WDR63Q8IWG1 891 aa16.45■□□□□ 0.22
NUP54-201ENST00000264883 HSCBQ8IWL3 235 aa16.44■□□□□ 0.22
NUP54-201ENST00000264883 PANK1Q8TE04 598 aa16.44■□□□□ 0.22
NUP54-201ENST00000264883 ANP32BQ92688 251 aaKnown RBP16.44■□□□□ 0.22
NUP54-201ENST00000264883 R3HCC1Q9Y3T6 440 aaKnown RBP16.44■□□□□ 0.22
NUP54-201ENST00000264883 CCDC27Q2M243 656 aa16.43■□□□□ 0.22
NUP54-201ENST00000264883 RUNDC1Q96C34 613 aa16.43■□□□□ 0.22
NUP54-201ENST00000264883 PDZRN3Q9UPQ7 1066 aa16.43■□□□□ 0.22
NUP54-201ENST00000264883 ZFYVE9O95405 1425 aa16.43■□□□□ 0.22
NUP54-201ENST00000264883 CFAP70Q5T0N1 1121 aa16.43■□□□□ 0.22
NUP54-201ENST00000264883 NASPP49321 788 aaPredicted RBP16.42■□□□□ 0.22
NUP54-201ENST00000264883 MTERF4Q7Z6M4 381 aaKnown RBP16.42■□□□□ 0.22
NUP54-201ENST00000264883 GBP4Q96PP9 640 aa16.42■□□□□ 0.22
NUP54-201ENST00000264883 PHF23Q9BUL5 403 aaPredicted RBP16.42■□□□□ 0.22
NUP54-201ENST00000264883 TNPO1Q92973 898 aaKnown RBP16.42■□□□□ 0.22
NUP54-201ENST00000264883 PTMSP20962 102 aa16.41■□□□□ 0.22
NUP54-201ENST00000264883 RARSP54136 660 aaKnown RBP16.41■□□□□ 0.22
NUP54-201ENST00000264883 CARD14Q9BXL6 1004 aa16.41■□□□□ 0.22
NUP54-201ENST00000264883 RWDD1Q9H446 243 aaPredicted RBP16.41■□□□□ 0.22
NUP54-201ENST00000264883 ADGRB1O14514 1584 aa16.41■□□□□ 0.22
NUP54-201ENST00000264883 DDIT3P35638 169 aa16.4■□□□□ 0.22
NUP54-201ENST00000264883 MFAP1P55081 439 aaKnown RBP16.4■□□□□ 0.22
NUP54-201ENST00000264883 NCOA3Q9Y6Q9 1424 aa16.4■□□□□ 0.22
NUP54-201ENST00000264883 CT47B1P0C2W7 299 aaPredicted RBP16.4■□□□□ 0.22
NUP54-201ENST00000264883 C14orf93Q9H972 538 aaKnown RBP16.4■□□□□ 0.22
NUP54-201ENST00000264883 UQCRHLA0A096LP55 91 aa16.39■□□□□ 0.21
NUP54-201ENST00000264883 UQCRHP07919 91 aa16.39■□□□□ 0.21
NUP54-201ENST00000264883 VGFO15240 615 aaPredicted RBP16.38■□□□□ 0.21
NUP54-201ENST00000264883 DMRT2Q9Y5R5 561 aa16.38■□□□□ 0.21
NUP54-201ENST00000264883 ESF1Q9H501 851 aaKnown RBP16.38■□□□□ 0.21
NUP54-201ENST00000264883 ZHX1Q9UKY1 873 aaPredicted RBP16.38■□□□□ 0.21
NUP54-201ENST00000264883 PCDHB15Q9Y5E8 787 aa16.38■□□□□ 0.21
NUP54-201ENST00000264883 A2ML1A8K2U0 1454 aa16.37■□□□□ 0.21
NUP54-201ENST00000264883 CFAP53Q96M91 514 aa16.37■□□□□ 0.21
NUP54-201ENST00000264883 PUS7Q96PZ0 661 aaKnown RBP16.37■□□□□ 0.21
NUP54-201ENST00000264883 CIZ1Q9ULV3 898 aaPredicted RBP16.37■□□□□ 0.21
NUP54-201ENST00000264883 NSD2O96028 1365 aa16.37■□□□□ 0.21
NUP54-201ENST00000264883 NSD3Q9BZ95 1437 aa16.36■□□□□ 0.21
NUP54-201ENST00000264883 MORC1Q86VD1 984 aa16.36■□□□□ 0.21
NUP54-201ENST00000264883 ARID3AQ99856 593 aa16.36■□□□□ 0.21
NUP54-201ENST00000264883 FER1L4A9Z1Z3 1794 aa16.36■□□□□ 0.21
NUP54-201ENST00000264883 DYNC1I1O14576 645 aa16.36■□□□□ 0.21
NUP54-201ENST00000264883 PRDM10Q9NQV6 1147 aa16.36■□□□□ 0.21
NUP54-201ENST00000264883 RAB3GAP1Q15042 981 aa16.35■□□□□ 0.21
NUP54-201ENST00000264883 ZNF500O60304 480 aaPredicted RBP16.35■□□□□ 0.21
NUP54-201ENST00000264883 HS1BP3Q53T59 392 aa16.35■□□□□ 0.21
NUP54-201ENST00000264883 UTP14CQ5TAP6 766 aaKnown RBP16.35■□□□□ 0.21
NUP54-201ENST00000264883 QRICH2Q9H0J4 1663 aa16.34■□□□□ 0.21
NUP54-201ENST00000264883 SMC5Q8IY18 1101 aa16.34■□□□□ 0.21
NUP54-201ENST00000264883 ADGRB2O60241 1585 aa16.34■□□□□ 0.21
NUP54-201ENST00000264883 TCP11L2Q8N4U5 519 aa16.34■□□□□ 0.21
NUP54-201ENST00000264883 DMTNQ08495 405 aa16.33■□□□□ 0.2
NUP54-201ENST00000264883 NOL7Q9UMY1 257 aaKnown RBP16.33■□□□□ 0.2
NUP54-201ENST00000264883 TNRQ92752 1358 aa16.32■□□□□ 0.2
NUP54-201ENST00000264883 XPCQ01831 940 aaPredicted RBP16.32■□□□□ 0.2
NUP54-201ENST00000264883 PDE4CQ08493 712 aa16.32■□□□□ 0.2
NUP54-201ENST00000264883 NUTM2DQ5VT03 806 aaPredicted RBP16.32■□□□□ 0.2
NUP54-201ENST00000264883 SNX21Q969T3 373 aa16.32■□□□□ 0.2
NUP54-201ENST00000264883 IBTKQ9P2D0 1353 aaPredicted RBP16.32■□□□□ 0.2
NUP54-201ENST00000264883 HSP90AB1P08238 724 aaKnown RBP16.31■□□□□ 0.2
NUP54-201ENST00000264883 MVPQ14764 893 aaKnown RBP16.31■□□□□ 0.2
NUP54-201ENST00000264883 C3P01024 1663 aa16.31■□□□□ 0.2
NUP54-201ENST00000264883 ADAMTSL3P82987 1691 aa16.31■□□□□ 0.2
NUP54-201ENST00000264883 CSPP1Q1MSJ5 1256 aa16.3■□□□□ 0.2
NUP54-201ENST00000264883 ZKSCAN2Q63HK3 967 aa16.3■□□□□ 0.2
NUP54-201ENST00000264883 GOLGA6L22H0YM25 854 aa16.29■□□□□ 0.2
NUP54-201ENST00000264883 CCDC94Q9BW85 323 aaPredicted RBP16.29■□□□□ 0.2
NUP54-201ENST00000264883 RIMS2Q9UQ26 1411 aa16.29■□□□□ 0.2
NUP54-201ENST00000264883 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.29■□□□□ 0.2
NUP54-201ENST00000264883 STAG3Q9UJ98 1225 aa16.29■□□□□ 0.2
NUP54-201ENST00000264883 UBR1Q8IWV7 1749 aa16.28■□□□□ 0.2
NUP54-201ENST00000264883 RLBP1P12271 317 aa16.28■□□□□ 0.2
NUP54-201ENST00000264883 TMEM132EQ6IEE7 984 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms