RNA–Protein interactions for RNA: ENST00000264389.6

COPS4-201, Transcript of COP9 signalosome subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS4, Length 1,744 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4-201ENST00000264389 ZBED9Q6R2W3 1325 aa11.14□□□□□ -0.63
COPS4-201ENST00000264389 INSRP06213 1382 aa11.14□□□□□ -0.63
COPS4-201ENST00000264389 NUTM2FA1L443 756 aa11.13□□□□□ -0.63
COPS4-201ENST00000264389 TNNT2P45379 298 aaPredicted RBP11.12□□□□□ -0.63
COPS4-201ENST00000264389 WDR43Q15061 677 aaKnown RBP eCLIP11.12□□□□□ -0.63
COPS4-201ENST00000264389 GGNBP2Q9H3C7 697 aa11.12□□□□□ -0.63
COPS4-201ENST00000264389 POLR3AO14802 1390 aaPredicted RBP11.12□□□□□ -0.63
COPS4-201ENST00000264389 USP54Q70EL1 1684 aa11.12□□□□□ -0.63
COPS4-201ENST00000264389 XIRP1Q702N8 1843 aaKnown RBP11.12□□□□□ -0.63
COPS4-201ENST00000264389 KIF1AQ12756 1690 aa11.12□□□□□ -0.63
COPS4-201ENST00000264389 USP6P35125 1406 aa11.12□□□□□ -0.63
COPS4-201ENST00000264389 HSPA2P54652 639 aa11.12□□□□□ -0.63
COPS4-201ENST00000264389 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.12□□□□□ -0.63
COPS4-201ENST00000264389 PIK3C2AO00443 1686 aa11.11□□□□□ -0.63
COPS4-201ENST00000264389 FYB1O15117 783 aa11.11□□□□□ -0.63
COPS4-201ENST00000264389 ZNF692Q9BU19 519 aaPredicted RBP11.11□□□□□ -0.63
COPS4-201ENST00000264389 ACEP12821 1306 aa11.1□□□□□ -0.63
COPS4-201ENST00000264389 PLEKHG3A1L390 1219 aa11.1□□□□□ -0.63
COPS4-201ENST00000264389 MARF1Q9Y4F3 1742 aaKnown RBP11.1□□□□□ -0.63
COPS4-201ENST00000264389 C14orf37Q86TY3 774 aa11.09□□□□□ -0.63
COPS4-201ENST00000264389 CFAP53Q96M91 514 aa11.09□□□□□ -0.63
COPS4-201ENST00000264389 COL3A1P02461 1466 aaPredicted RBP11.09□□□□□ -0.63
COPS4-201ENST00000264389 NME9Q86XW9 330 aa11.07□□□□□ -0.64
COPS4-201ENST00000264389 PMFBP1Q8TBY8 1022 aa11.07□□□□□ -0.64
COPS4-201ENST00000264389 RBM33Q96EV2 1170 aaKnown RBP11.07□□□□□ -0.64
COPS4-201ENST00000264389 OVOS2A0A0J9YW53 1432 aa11.07□□□□□ -0.64
COPS4-201ENST00000264389 OVOS2Q6IE36 1432 aa11.07□□□□□ -0.64
COPS4-201ENST00000264389 LRRC7Q96NW7 1537 aa11.07□□□□□ -0.64
COPS4-201ENST00000264389 MTHFSP49914 203 aa11.06□□□□□ -0.64
COPS4-201ENST00000264389 PROSER2Q86WR7 435 aaPredicted RBP11.06□□□□□ -0.64
COPS4-201ENST00000264389 NGDNQ8NEJ9 315 aaKnown RBP11.06□□□□□ -0.64
COPS4-201ENST00000264389 SSH2Q76I76 1423 aa11.06□□□□□ -0.64
COPS4-201ENST00000264389 SMG6Q86US8 1419 aaKnown RBP11.06□□□□□ -0.64
COPS4-201ENST00000264389 TTC21BQ7Z4L5 1316 aa11.06□□□□□ -0.64
COPS4-201ENST00000264389 TTC21AQ8NDW8 1320 aa11.06□□□□□ -0.64
COPS4-201ENST00000264389 CDK12Q9NYV4 1490 aaPredicted RBP11.06□□□□□ -0.64
COPS4-201ENST00000264389 MYCNP04198 464 aaPredicted RBP11.06□□□□□ -0.64
COPS4-201ENST00000264389 COG3Q96JB2 828 aa11.06□□□□□ -0.64
COPS4-201ENST00000264389 ADAMTS8Q9UP79 889 aa11.06□□□□□ -0.64
COPS4-201ENST00000264389 GTF3C3Q9Y5Q9 886 aa11.06□□□□□ -0.64
COPS4-201ENST00000264389 LTN1O94822 1766 aa11.05□□□□□ -0.64
COPS4-201ENST00000264389 DCCP43146 1447 aa11.05□□□□□ -0.64
COPS4-201ENST00000264389 NCOA3Q9Y6Q9 1424 aa11.05□□□□□ -0.64
COPS4-201ENST00000264389 TRPM3Q9HCF6 1732 aaPredicted RBP11.05□□□□□ -0.64
COPS4-201ENST00000264389 SENP3-EIF4A1A0A087X0R7 540 aa11.04□□□□□ -0.64
COPS4-201ENST00000264389 TMEM94Q12767 1356 aa11.04□□□□□ -0.64
COPS4-201ENST00000264389 AATKQ6ZMQ8 1374 aa11.04□□□□□ -0.64
COPS4-201ENST00000264389 PEAK1Q9H792 1746 aa11.04□□□□□ -0.64
COPS4-201ENST00000264389 PHF8Q9UPP1 1060 aa11.04□□□□□ -0.64
COPS4-201ENST00000264389 ZRANB1Q9UGI0 708 aa11.03□□□□□ -0.64
COPS4-201ENST00000264389 IQSEC2Q5JU85 1478 aa11.03□□□□□ -0.64
COPS4-201ENST00000264389 C1orf167Q5SNV9 1468 aa11.02□□□□□ -0.65
COPS4-201ENST00000264389 CCDC146Q8IYE0 955 aa11.01□□□□□ -0.65
COPS4-201ENST00000264389 MST1RQ04912 1400 aa11.01□□□□□ -0.65
COPS4-201ENST00000264389 MSH6P52701 1360 aa11.01□□□□□ -0.65
COPS4-201ENST00000264389 USP31Q70CQ4 1352 aa11.01□□□□□ -0.65
COPS4-201ENST00000264389 PNPLA6Q8IY17 1366 aa11.01□□□□□ -0.65
COPS4-201ENST00000264389 ESCO1Q5FWF5 840 aa11.01□□□□□ -0.65
COPS4-201ENST00000264389 C19orf44Q9H6X5 657 aa11.01□□□□□ -0.65
COPS4-201ENST00000264389 NUDCQ9Y266 331 aa11.01□□□□□ -0.65
COPS4-201ENST00000264389 SALL2Q9Y467 1007 aaPredicted RBP11.01□□□□□ -0.65
COPS4-201ENST00000264389 ALS2Q96Q42 1657 aa11□□□□□ -0.65
COPS4-201ENST00000264389 POLKQ9UBT6 870 aa11□□□□□ -0.65
COPS4-201ENST00000264389 RGPD1P0DJD0 1748 aa10.99□□□□□ -0.65
COPS4-201ENST00000264389 PPM1GO15355 546 aaPredicted RBP10.99□□□□□ -0.65
COPS4-201ENST00000264389 DIAPH1O60610 1272 aaKnown RBP10.99□□□□□ -0.65
COPS4-201ENST00000264389 EMILIN1Q9Y6C2 1016 aa10.99□□□□□ -0.65
COPS4-201ENST00000264389 U2SURPO15042 1029 aaKnown RBP10.98□□□□□ -0.65
COPS4-201ENST00000264389 U2AF1L5P0DN76 240 aaPredicted RBP10.98□□□□□ -0.65
COPS4-201ENST00000264389 ATF3P18847 181 aa10.98□□□□□ -0.65
COPS4-201ENST00000264389 U2AF1Q01081 240 aaKnown RBP eCLIP10.98□□□□□ -0.65
COPS4-201ENST00000264389 PDE3BQ13370 1112 aa10.98□□□□□ -0.65
COPS4-201ENST00000264389 DLG5Q8TDM6 1919 aa10.98□□□□□ -0.65
COPS4-201ENST00000264389 PHRF1Q9P1Y6 1649 aaKnown RBP10.98□□□□□ -0.65
COPS4-201ENST00000264389 PAK3O75914 559 aaPredicted RBP10.98□□□□□ -0.65
COPS4-201ENST00000264389 FBLN1P23142 703 aa10.98□□□□□ -0.65
COPS4-201ENST00000264389 RRS1Q15050 365 aaKnown RBP10.98□□□□□ -0.65
COPS4-201ENST00000264389 ZNF335Q9H4Z2 1342 aaPredicted RBP10.97□□□□□ -0.65
COPS4-201ENST00000264389 NEFLP07196 543 aa10.97□□□□□ -0.65
COPS4-201ENST00000264389 CADPS2Q86UW7 1296 aa10.97□□□□□ -0.65
COPS4-201ENST00000264389 RUNDC1Q96C34 613 aa10.97□□□□□ -0.65
COPS4-201ENST00000264389 ORAI2Q96SN7 254 aa10.97□□□□□ -0.65
COPS4-201ENST00000264389 NFAT5O94916 1531 aa10.96□□□□□ -0.65
COPS4-201ENST00000264389 APAF1O14727 1248 aa10.96□□□□□ -0.65
COPS4-201ENST00000264389 PSME1Q06323 249 aa10.96□□□□□ -0.65
COPS4-201ENST00000264389 NGEFQ8N5V2 710 aa10.96□□□□□ -0.65
COPS4-201ENST00000264389 U3KPZ7 1027 aaPredicted RBP10.96□□□□□ -0.65
COPS4-201ENST00000264389 SLIT3O75094 1523 aa10.96□□□□□ -0.66
COPS4-201ENST00000264389 SOX12O15370 315 aa10.95□□□□□ -0.66
COPS4-201ENST00000264389 NLRP6P59044 892 aa10.95□□□□□ -0.66
COPS4-201ENST00000264389 ABTB2Q8N961 1025 aa10.95□□□□□ -0.66
COPS4-201ENST00000264389 CRYBG1Q9Y4K1 1723 aa10.95□□□□□ -0.66
COPS4-201ENST00000264389 MAPK8IP3Q9UPT6 1336 aa10.95□□□□□ -0.66
COPS4-201ENST00000264389 SBNO1A3KN83 1393 aa10.95□□□□□ -0.66
COPS4-201ENST00000264389 FLT4P35916 1363 aa10.95□□□□□ -0.66
COPS4-201ENST00000264389 NUTM2GQ5VZR2 741 aa10.94□□□□□ -0.66
COPS4-201ENST00000264389 PNNQ9H307 717 aaKnown RBP10.94□□□□□ -0.66
COPS4-201ENST00000264389 SUPT16HQ9Y5B9 1047 aaKnown RBP10.94□□□□□ -0.66
COPS4-201ENST00000264389 ZNF521Q96K83 1311 aa10.94□□□□□ -0.66
COPS4-201ENST00000264389 FOXO3O43524 673 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms