RNA–Protein interactions for RNA: ENST00000263741.11

SDF4-201, Transcript of stromal cell derived factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDF4, Length 2,079 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-201ENST00000263741 COL22A1Q8NFW1 1626 aaPredicted RBP25.51■■□□□ 1.67
SDF4-201ENST00000263741 SPATA31A3Q5VYP0 1347 aa25.51■■□□□ 1.67
SDF4-201ENST00000263741 PIK3C2AO00443 1686 aa25.5■■□□□ 1.67
SDF4-201ENST00000263741 KTN1Q86UP2 1357 aaKnown RBP25.5■■□□□ 1.67
SDF4-201ENST00000263741 SBNO1A3KN83 1393 aa25.49■■□□□ 1.67
SDF4-201ENST00000263741 NINLQ9Y2I6 1382 aa25.49■■□□□ 1.67
SDF4-201ENST00000263741 CRYBG1Q9Y4K1 1723 aa25.48■■□□□ 1.67
SDF4-201ENST00000263741 MARF1Q9Y4F3 1742 aaKnown RBP25.47■■□□□ 1.67
SDF4-201ENST00000263741 SSH2Q76I76 1423 aa25.46■■□□□ 1.67
SDF4-201ENST00000263741 NUTM2GQ5VZR2 741 aa25.46■■□□□ 1.67
SDF4-201ENST00000263741 WASHC2AQ641Q2 1341 aa25.45■■□□□ 1.67
SDF4-201ENST00000263741 ANKRD36BQ8N2N9 1353 aa25.45■■□□□ 1.66
SDF4-201ENST00000263741 CCDC7Q96M83 1385 aa25.45■■□□□ 1.66
SDF4-201ENST00000263741 LRP6O75581 1613 aa25.45■■□□□ 1.66
SDF4-201ENST00000263741 HDGFL2Q7Z4V5 671 aaPredicted RBP25.44■■□□□ 1.66
SDF4-201ENST00000263741 TERF2IPQ9NYB0 399 aa25.44■■□□□ 1.66
SDF4-201ENST00000263741 PHRF1Q9P1Y6 1649 aaKnown RBP25.44■■□□□ 1.66
SDF4-201ENST00000263741 NUTM2BA6NNL0 878 aaPredicted RBP25.43■■□□□ 1.66
SDF4-201ENST00000263741 NUTM2EB1AL46 878 aaPredicted RBP25.43■■□□□ 1.66
SDF4-201ENST00000263741 NUTM2AQ8IVF1 878 aaPredicted RBP25.43■■□□□ 1.66
SDF4-201ENST00000263741 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.43■■□□□ 1.66
SDF4-201ENST00000263741 MED1Q15648 1581 aaPredicted RBP25.42■■□□□ 1.66
SDF4-201ENST00000263741 KIF20BQ96Q89 1820 aa25.42■■□□□ 1.66
SDF4-201ENST00000263741 CABLES1Q8TDN4 633 aa25.42■■□□□ 1.66
SDF4-201ENST00000263741 ZNF692Q9BU19 519 aaPredicted RBP25.41■■□□□ 1.66
SDF4-201ENST00000263741 TTC21BQ7Z4L5 1316 aa25.41■■□□□ 1.66
SDF4-201ENST00000263741 ARHGEF10O15013 1369 aa25.41■■□□□ 1.66
SDF4-201ENST00000263741 EDC4Q6P2E9 1401 aaKnown RBP25.41■■□□□ 1.66
SDF4-201ENST00000263741 ABTB2Q8N961 1025 aa25.4■■□□□ 1.66
SDF4-201ENST00000263741 NSD3Q9BZ95 1437 aa25.38■■□□□ 1.65
SDF4-201ENST00000263741 CARD14Q9BXL6 1004 aa25.37■■□□□ 1.65
SDF4-201ENST00000263741 SPATA31A6Q5VVP1 1343 aa25.37■■□□□ 1.65
SDF4-201ENST00000263741 NME9Q86XW9 330 aa25.36■■□□□ 1.65
SDF4-201ENST00000263741 ZRANB1Q9UGI0 708 aa25.36■■□□□ 1.65
SDF4-201ENST00000263741 BRD4O60885 1362 aaPredicted RBP25.35■■□□□ 1.65
SDF4-201ENST00000263741 USP54Q70EL1 1684 aa25.35■■□□□ 1.65
SDF4-201ENST00000263741 PANK3Q9H999 370 aa25.34■■□□□ 1.65
SDF4-201ENST00000263741 TTC21AQ8NDW8 1320 aa25.34■■□□□ 1.65
SDF4-201ENST00000263741 ADAMTS2O95450 1211 aa25.33■■□□□ 1.65
SDF4-201ENST00000263741 HAP1P54257 671 aaPredicted RBP25.32■■□□□ 1.64
SDF4-201ENST00000263741 NLRP6P59044 892 aa25.32■■□□□ 1.64
SDF4-201ENST00000263741 SLIT3O75094 1523 aa25.29■■□□□ 1.64
SDF4-201ENST00000263741 ANKRD26Q9UPS8 1709 aa25.29■■□□□ 1.64
SDF4-201ENST00000263741 SOX12O15370 315 aa25.28■■□□□ 1.64
SDF4-201ENST00000263741 USP19O94966 1318 aa25.28■■□□□ 1.64
SDF4-201ENST00000263741 MEX3CQ5U5Q3 659 aaKnown RBP25.28■■□□□ 1.64
SDF4-201ENST00000263741 PLCH1Q4KWH8 1693 aa25.28■■□□□ 1.64
SDF4-201ENST00000263741 OVOS2A0A0J9YW53 1432 aa25.27■■□□□ 1.64
SDF4-201ENST00000263741 OVOS2Q6IE36 1432 aa25.27■■□□□ 1.64
SDF4-201ENST00000263741 NLRP13Q86W25 1043 aa25.27■■□□□ 1.64
SDF4-201ENST00000263741 LTN1O94822 1766 aa25.26■■□□□ 1.63
SDF4-201ENST00000263741 GGNBP2Q9H3C7 697 aa25.26■■□□□ 1.63
SDF4-201ENST00000263741 C8orf37Q96NL8 207 aa25.24■■□□□ 1.63
SDF4-201ENST00000263741 USP31Q70CQ4 1352 aa25.24■■□□□ 1.63
SDF4-201ENST00000263741 NFAT5O94916 1531 aa25.24■■□□□ 1.63
SDF4-201ENST00000263741 FYB1O15117 783 aa25.24■■□□□ 1.63
SDF4-201ENST00000263741 ZC3H6P61129 1189 aaKnown RBP25.22■■□□□ 1.63
SDF4-201ENST00000263741 RGPD5Q99666 1765 aa25.22■■□□□ 1.63
SDF4-201ENST00000263741 KIAA0232Q92628 1395 aa25.21■■□□□ 1.63
SDF4-201ENST00000263741 GCP02774 474 aa25.21■■□□□ 1.63
SDF4-201ENST00000263741 COL14A1Q05707 1796 aaKnown RBP25.2■■□□□ 1.63
SDF4-201ENST00000263741 CGNL1Q0VF96 1302 aa25.2■■□□□ 1.62
SDF4-201ENST00000263741 ZBTB7CA1YPR0 619 aa25.2■■□□□ 1.62
SDF4-201ENST00000263741 COG3Q96JB2 828 aa25.19■■□□□ 1.62
SDF4-201ENST00000263741 CNGB1Q14028 1251 aaPredicted RBP25.18■■□□□ 1.62
SDF4-201ENST00000263741 CHRNA2Q15822 529 aa25.18■■□□□ 1.62
SDF4-201ENST00000263741 FBLN1P23142 703 aa25.17■■□□□ 1.62
SDF4-201ENST00000263741 KNSTRNQ9Y448 316 aa25.17■■□□□ 1.62
SDF4-201ENST00000263741 NRAPQ86VF7 1730 aa25.17■■□□□ 1.62
SDF4-201ENST00000263741 NGLY1Q96IV0 654 aa25.17■■□□□ 1.62
SDF4-201ENST00000263741 PRDM11Q9NQV5 511 aa25.16■■□□□ 1.62
SDF4-201ENST00000263741 NWD2Q9ULI1 1742 aa25.16■■□□□ 1.62
SDF4-201ENST00000263741 LMO7Q8WWI1 1683 aa25.16■■□□□ 1.62
SDF4-201ENST00000263741 AFF2P51816 1311 aa25.16■■□□□ 1.62
SDF4-201ENST00000263741 COL18A1P39060 1754 aa25.16■■□□□ 1.62
SDF4-201ENST00000263741 ZNF316A6NFI3 1004 aaPredicted RBP25.16■■□□□ 1.62
SDF4-201ENST00000263741 DDX10Q13206 875 aaKnown RBP25.16■■□□□ 1.62
SDF4-201ENST00000263741 PHF23Q9BUL5 403 aaPredicted RBP25.16■■□□□ 1.62
SDF4-201ENST00000263741 MAP2P11137 1827 aaKnown RBP25.15■■□□□ 1.62
SDF4-201ENST00000263741 FAM83GA6ND36 823 aa25.15■■□□□ 1.62
SDF4-201ENST00000263741 PER1O15534 1290 aaPredicted RBP25.15■■□□□ 1.62
SDF4-201ENST00000263741 AMER1Q5JTC6 1135 aaPredicted RBP25.13■■□□□ 1.61
SDF4-201ENST00000263741 SLIT2O94813 1529 aa25.12■■□□□ 1.61
SDF4-201ENST00000263741 CPDO75976 1380 aa25.12■■□□□ 1.61
SDF4-201ENST00000263741 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.12■■□□□ 1.61
SDF4-201ENST00000263741 KCNH5Q8NCM2 988 aa25.12■■□□□ 1.61
SDF4-201ENST00000263741 RGS17Q9UGC6 210 aaPredicted RBP25.11■■□□□ 1.61
SDF4-201ENST00000263741 TNNT2P45379 298 aaPredicted RBP25.11■■□□□ 1.61
SDF4-201ENST00000263741 CC2D1BQ5T0F9 858 aaKnown RBP25.11■■□□□ 1.61
SDF4-201ENST00000263741 PEAK1Q9H792 1746 aa25.11■■□□□ 1.61
SDF4-201ENST00000263741 CAMTA1Q9Y6Y1 1673 aa25.1■■□□□ 1.61
SDF4-201ENST00000263741 BCL9LQ86UU0 1499 aa25.09■■□□□ 1.61
SDF4-201ENST00000263741 NSD2O96028 1365 aa25.09■■□□□ 1.61
SDF4-201ENST00000263741 RRS1Q15050 365 aaKnown RBP25.08■■□□□ 1.61
SDF4-201ENST00000263741 BTG4Q9NY30 223 aa25.08■■□□□ 1.61
SDF4-201ENST00000263741 ARHGEF25Q86VW2 580 aa25.08■■□□□ 1.6
SDF4-201ENST00000263741 FNBP4Q8N3X1 1017 aaPredicted RBP25.07■■□□□ 1.6
SDF4-201ENST00000263741 USP21Q9UK80 565 aa25.07■■□□□ 1.6
SDF4-201ENST00000263741 MAP3K19Q56UN5 1328 aa25.05■■□□□ 1.6
SDF4-201ENST00000263741 MORC1Q86VD1 984 aa25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms