RNA–Protein interactions for RNA: ENST00000263202.14

UFD1-201, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UFD1, Length 1,814 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-201ENST00000263202 SSH2Q76I76 1423 aa30.71■■■□□ 2.51
UFD1-201ENST00000263202 ESCO1Q5FWF5 840 aa30.7■■■□□ 2.5
UFD1-201ENST00000263202 CADPS2Q86UW7 1296 aa30.69■■■□□ 2.5
UFD1-201ENST00000263202 KIF1AQ12756 1690 aa30.68■■■□□ 2.5
UFD1-201ENST00000263202 AEBP2Q6ZN18 517 aaPredicted RBP30.68■■■□□ 2.5
UFD1-201ENST00000263202 TTC21BQ7Z4L5 1316 aa30.68■■■□□ 2.5
UFD1-201ENST00000263202 ORAI2Q96SN7 254 aa30.67■■■□□ 2.5
UFD1-201ENST00000263202 LTBP4Q8N2S1 1624 aa30.65■■■□□ 2.5
UFD1-201ENST00000263202 NME9Q86XW9 330 aa30.65■■■□□ 2.5
UFD1-201ENST00000263202 TTC21AQ8NDW8 1320 aa30.62■■■□□ 2.49
UFD1-201ENST00000263202 TNNT2P45379 298 aaPredicted RBP30.61■■■□□ 2.49
UFD1-201ENST00000263202 YTHDC1Q96MU7 727 aaKnown RBP30.61■■■□□ 2.49
UFD1-201ENST00000263202 ZRANB1Q9UGI0 708 aa30.6■■■□□ 2.49
UFD1-201ENST00000263202 PIK3C2AO00443 1686 aa30.59■■■□□ 2.49
UFD1-201ENST00000263202 PNISRQ8TF01 805 aaKnown RBP30.57■■■□□ 2.48
UFD1-201ENST00000263202 OVOS2A0A0J9YW53 1432 aa30.55■■■□□ 2.48
UFD1-201ENST00000263202 OVOS2Q6IE36 1432 aa30.55■■■□□ 2.48
UFD1-201ENST00000263202 PSME1Q06323 249 aa30.55■■■□□ 2.48
UFD1-201ENST00000263202 FAM9BQ8IZU0 186 aa30.55■■■□□ 2.48
UFD1-201ENST00000263202 COG3Q96JB2 828 aa30.55■■■□□ 2.48
UFD1-201ENST00000263202 FOXO3O43524 673 aa30.54■■■□□ 2.48
UFD1-201ENST00000263202 SCAF1Q9H7N4 1312 aaKnown RBP30.54■■■□□ 2.48
UFD1-201ENST00000263202 USP54Q70EL1 1684 aa30.54■■■□□ 2.48
UFD1-201ENST00000263202 MAP2P11137 1827 aaKnown RBP30.53■■■□□ 2.48
UFD1-201ENST00000263202 TRPM3Q9HCF6 1732 aaPredicted RBP30.53■■■□□ 2.48
UFD1-201ENST00000263202 MARF1Q9Y4F3 1742 aaKnown RBP30.53■■■□□ 2.48
UFD1-201ENST00000263202 USP31Q70CQ4 1352 aa30.51■■■□□ 2.48
UFD1-201ENST00000263202 MTHFSP49914 203 aa30.5■■■□□ 2.47
UFD1-201ENST00000263202 SLAIN2Q9P270 581 aa30.5■■■□□ 2.47
UFD1-201ENST00000263202 PAK3O75914 559 aaPredicted RBP30.49■■■□□ 2.47
UFD1-201ENST00000263202 AATKQ6ZMQ8 1374 aa30.47■■■□□ 2.47
UFD1-201ENST00000263202 KRT28Q7Z3Y7 464 aa30.46■■■□□ 2.47
UFD1-201ENST00000263202 XPCQ01831 940 aaPredicted RBP30.45■■■□□ 2.47
UFD1-201ENST00000263202 BRINP3Q76B58 766 aa30.45■■■□□ 2.47
UFD1-201ENST00000263202 ABTB2Q8N961 1025 aa30.45■■■□□ 2.47
UFD1-201ENST00000263202 FBLN1P23142 703 aa30.45■■■□□ 2.46
UFD1-201ENST00000263202 SHPRHQ149N8 1683 aa30.45■■■□□ 2.46
UFD1-201ENST00000263202 NLRP6P59044 892 aa30.43■■■□□ 2.46
UFD1-201ENST00000263202 POLKQ9UBT6 870 aa30.43■■■□□ 2.46
UFD1-201ENST00000263202 ALS2Q96Q42 1657 aa30.42■■■□□ 2.46
UFD1-201ENST00000263202 NPHP3Q7Z494 1330 aa30.42■■■□□ 2.46
UFD1-201ENST00000263202 DDX17Q92841 729 aaKnown RBP30.41■■■□□ 2.46
UFD1-201ENST00000263202 SMG6Q86US8 1419 aaKnown RBP30.41■■■□□ 2.46
UFD1-201ENST00000263202 CFAP53Q96M91 514 aa30.4■■■□□ 2.46
UFD1-201ENST00000263202 PXDNQ92626 1479 aa30.4■■■□□ 2.46
UFD1-201ENST00000263202 NUTM2GQ5VZR2 741 aa30.4■■■□□ 2.46
UFD1-201ENST00000263202 COL3A1P02461 1466 aaPredicted RBP30.38■■■□□ 2.45
UFD1-201ENST00000263202 PNPLA6Q8IY17 1366 aa30.37■■■□□ 2.45
UFD1-201ENST00000263202 SBNO1A3KN83 1393 aa30.36■■■□□ 2.45
UFD1-201ENST00000263202 WDR43Q15061 677 aaKnown RBP eCLIP30.36■■■□□ 2.45
UFD1-201ENST00000263202 EMILIN1Q9Y6C2 1016 aa30.36■■■□□ 2.45
UFD1-201ENST00000263202 NHSL1Q5SYE7 1610 aa30.36■■■□□ 2.45
UFD1-201ENST00000263202 RRS1Q15050 365 aaKnown RBP30.36■■■□□ 2.45
UFD1-201ENST00000263202 INSRP06213 1382 aa30.35■■■□□ 2.45
UFD1-201ENST00000263202 CDK12Q9NYV4 1490 aaPredicted RBP30.35■■■□□ 2.45
UFD1-201ENST00000263202 ADAMTS8Q9UP79 889 aa30.34■■■□□ 2.45
UFD1-201ENST00000263202 HNRNPUQ00839 825 aaKnown RBP eCLIP30.33■■■□□ 2.45
UFD1-201ENST00000263202 PEAK1Q9H792 1746 aa30.33■■■□□ 2.45
UFD1-201ENST00000263202 PPM1GO15355 546 aaPredicted RBP30.32■■■□□ 2.44
UFD1-201ENST00000263202 ROBO1Q9Y6N7 1651 aa30.31■■■□□ 2.44
UFD1-201ENST00000263202 SOX12O15370 315 aa30.31■■■□□ 2.44
UFD1-201ENST00000263202 BLMP54132 1417 aaPredicted RBP30.3■■■□□ 2.44
UFD1-201ENST00000263202 SLIT3O75094 1523 aa30.3■■■□□ 2.44
UFD1-201ENST00000263202 TNS3Q68CZ2 1445 aa30.3■■■□□ 2.44
UFD1-201ENST00000263202 LMOD2Q6P5Q4 547 aa30.29■■■□□ 2.44
UFD1-201ENST00000263202 NFAT5O94916 1531 aa30.29■■■□□ 2.44
UFD1-201ENST00000263202 SOS2Q07890 1332 aaPredicted RBP30.29■■■□□ 2.44
UFD1-201ENST00000263202 LTN1O94822 1766 aa30.28■■■□□ 2.44
UFD1-201ENST00000263202 SPATA31A3Q5VYP0 1347 aa30.27■■■□□ 2.44
UFD1-201ENST00000263202 USP19O94966 1318 aa30.27■■■□□ 2.44
UFD1-201ENST00000263202 MAP3K19Q56UN5 1328 aa30.27■■■□□ 2.44
UFD1-201ENST00000263202 DIAPH1O60610 1272 aaKnown RBP30.25■■■□□ 2.43
UFD1-201ENST00000263202 MED1Q15648 1581 aaPredicted RBP30.25■■■□□ 2.43
UFD1-201ENST00000263202 CRYBG1Q9Y4K1 1723 aa30.24■■■□□ 2.43
UFD1-201ENST00000263202 KCNH5Q8NCM2 988 aa30.24■■■□□ 2.43
UFD1-201ENST00000263202 PHRF1Q9P1Y6 1649 aaKnown RBP30.23■■■□□ 2.43
UFD1-201ENST00000263202 NUDCQ9Y266 331 aa30.22■■■□□ 2.43
UFD1-201ENST00000263202 CENPBP07199 599 aaPredicted RBP30.22■■■□□ 2.43
UFD1-201ENST00000263202 ARHGEF10O15013 1369 aa30.21■■■□□ 2.43
UFD1-201ENST00000263202 IQSEC2Q5JU85 1478 aa30.21■■■□□ 2.43
UFD1-201ENST00000263202 AHDC1Q5TGY3 1603 aaPredicted RBP30.2■■■□□ 2.43
UFD1-201ENST00000263202 GCP02774 474 aa30.2■■■□□ 2.43
UFD1-201ENST00000263202 KIF24Q5T7B8 1368 aa30.2■■■□□ 2.43
UFD1-201ENST00000263202 FLT4P35916 1363 aa30.19■■■□□ 2.42
UFD1-201ENST00000263202 IL13P35225 146 aa30.18■■■□□ 2.42
UFD1-201ENST00000263202 TOM1O60784 492 aa30.17■■■□□ 2.42
UFD1-201ENST00000263202 U2AF1L5P0DN76 240 aaPredicted RBP30.17■■■□□ 2.42
UFD1-201ENST00000263202 AMPHP49418 695 aa30.17■■■□□ 2.42
UFD1-201ENST00000263202 U2AF1Q01081 240 aaKnown RBP eCLIP30.17■■■□□ 2.427e-9■■■□□ 15.8
UFD1-201ENST00000263202 U2SURPO15042 1029 aaKnown RBP30.17■■■□□ 2.42
UFD1-201ENST00000263202 ZBED9Q6R2W3 1325 aa30.16■■■□□ 2.42
UFD1-201ENST00000263202 PLEKHG5O94827 1062 aa30.16■■■□□ 2.42
UFD1-201ENST00000263202 HSP90AB2PQ58FF8 381 aa30.16■■■□□ 2.42
UFD1-201ENST00000263202 RTL1A6NKG5 1358 aa30.15■■■□□ 2.42
UFD1-201ENST00000263202 CCDC146Q8IYE0 955 aa30.15■■■□□ 2.42
UFD1-201ENST00000263202 SENP3-EIF4A1A0A087X0R7 540 aa30.14■■■□□ 2.42
UFD1-201ENST00000263202 HOXC9P31274 260 aa30.13■■■□□ 2.41
UFD1-201ENST00000263202 EIF4A2Q14240 407 aaKnown RBP30.13■■■□□ 2.41
UFD1-201ENST00000263202 RGPD1P0DJD0 1748 aa30.13■■■□□ 2.41
UFD1-201ENST00000263202 ABCA3Q99758 1704 aa30.12■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms