RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 NGEFQ8N5V2 710 aa11.57□□□□□ -0.56
MSH4-201ENST00000263187 C22orf23Q9BZE7 217 aa11.57□□□□□ -0.56
MSH4-201ENST00000263187 A0A1W2PP64 1363 aa11.57□□□□□ -0.56
MSH4-201ENST00000263187 MYOM2P54296 1465 aa11.56□□□□□ -0.56
MSH4-201ENST00000263187 VWDEQ8N2E2 1590 aa11.56□□□□□ -0.56
MSH4-201ENST00000263187 KIF1BO60333 1816 aa11.56□□□□□ -0.56
MSH4-201ENST00000263187 ATF7IPQ6VMQ6 1270 aa11.55□□□□□ -0.56
MSH4-201ENST00000263187 WAPLQ7Z5K2 1190 aa11.55□□□□□ -0.56
MSH4-201ENST00000263187 EFCAB6Q5THR3 1501 aa11.55□□□□□ -0.56
MSH4-201ENST00000263187 ADAMTSL3P82987 1691 aa11.55□□□□□ -0.56
MSH4-201ENST00000263187 MLECQ14165 292 aa11.55□□□□□ -0.56
MSH4-201ENST00000263187 ZC3H13Q5T200 1668 aaKnown RBP11.55□□□□□ -0.56
MSH4-201ENST00000263187 PRKAR2BP31323 418 aa11.54□□□□□ -0.56
MSH4-201ENST00000263187 PLEKHF1Q96S99 279 aa11.54□□□□□ -0.56
MSH4-201ENST00000263187 ZRANB1Q9UGI0 708 aa11.54□□□□□ -0.56
MSH4-201ENST00000263187 DIAPH1O60610 1272 aaKnown RBP11.54□□□□□ -0.56
MSH4-201ENST00000263187 ANTXR1Q9H6X2 564 aa11.54□□□□□ -0.56
MSH4-201ENST00000263187 PHACTR3Q96KR7 559 aa11.54□□□□□ -0.56
MSH4-201ENST00000263187 ANKRD36BQ8N2N9 1353 aa11.53□□□□□ -0.56
MSH4-201ENST00000263187 APBB1O00213 710 aa11.53□□□□□ -0.56
MSH4-201ENST00000263187 ANKRD45Q5TZF3 282 aa11.53□□□□□ -0.56
MSH4-201ENST00000263187 TSPYL6Q8N831 410 aa11.53□□□□□ -0.56
MSH4-201ENST00000263187 CDK19Q9BWU1 502 aa11.53□□□□□ -0.56
MSH4-201ENST00000263187 NCKAP5LQ9HCH0 1330 aa11.53□□□□□ -0.56
MSH4-201ENST00000263187 SHPRHQ149N8 1683 aa11.52□□□□□ -0.56
MSH4-201ENST00000263187 SOX12O15370 315 aa11.52□□□□□ -0.56
MSH4-201ENST00000263187 CCDC27Q2M243 656 aa11.52□□□□□ -0.56
MSH4-201ENST00000263187 SBNO2Q9Y2G9 1366 aa11.52□□□□□ -0.56
MSH4-201ENST00000263187 NINLQ9Y2I6 1382 aa11.52□□□□□ -0.56
MSH4-201ENST00000263187 NLRP1Q9C000 1473 aa11.52□□□□□ -0.56
MSH4-201ENST00000263187 NUTM2FA1L443 756 aa11.52□□□□□ -0.57
MSH4-201ENST00000263187 PANK2Q9BZ23 570 aa11.52□□□□□ -0.57
MSH4-201ENST00000263187 DDX19BQ9UMR2 479 aa11.52□□□□□ -0.57
MSH4-201ENST00000263187 IQSEC2Q5JU85 1478 aa11.52□□□□□ -0.57
MSH4-201ENST00000263187 DCTN1Q14203 1278 aa11.52□□□□□ -0.57
MSH4-201ENST00000263187 QRICH2Q9H0J4 1663 aa11.52□□□□□ -0.57
MSH4-201ENST00000263187 TERF2IPQ9NYB0 399 aa11.52□□□□□ -0.57
MSH4-201ENST00000263187 EMILIN1Q9Y6C2 1016 aa11.51□□□□□ -0.57
MSH4-201ENST00000263187 FER1L4A9Z1Z3 1794 aa11.51□□□□□ -0.57
MSH4-201ENST00000263187 FAM83GA6ND36 823 aa11.5□□□□□ -0.57
MSH4-201ENST00000263187 ATAD2Q6PL18 1390 aa11.5□□□□□ -0.57
MSH4-201ENST00000263187 ADGRB1O14514 1584 aa11.5□□□□□ -0.57
MSH4-201ENST00000263187 HDGFL2Q7Z4V5 671 aaPredicted RBP11.5□□□□□ -0.57
MSH4-201ENST00000263187 RBM42Q9BTD8 480 aaKnown RBP11.5□□□□□ -0.57
MSH4-201ENST00000263187 ADGRB3O60242 1522 aa11.5□□□□□ -0.57
MSH4-201ENST00000263187 LMTK2Q8IWU2 1503 aa11.5□□□□□ -0.57
MSH4-201ENST00000263187 TULP4Q9NRJ4 1543 aa11.5□□□□□ -0.57
MSH4-201ENST00000263187 NRXN1Q9ULB1 1477 aa11.5□□□□□ -0.57
MSH4-201ENST00000263187 RRS1Q15050 365 aaKnown RBP11.49□□□□□ -0.57
MSH4-201ENST00000263187 HSP90AA1P07900 732 aaKnown RBP11.49□□□□□ -0.57
MSH4-201ENST00000263187 HSCBQ8IWL3 235 aa11.49□□□□□ -0.57
MSH4-201ENST00000263187 ZBTB40Q9NUA8 1239 aa11.49□□□□□ -0.57
MSH4-201ENST00000263187 KIAA1210Q9ULL0 1709 aa11.49□□□□□ -0.57
MSH4-201ENST00000263187 MCM4P33991 863 aa11.48□□□□□ -0.57
MSH4-201ENST00000263187 RPGRIP1LQ68CZ1 1315 aa11.48□□□□□ -0.57
MSH4-201ENST00000263187 CLTCQ00610 1675 aaKnown RBP11.48□□□□□ -0.57
MSH4-201ENST00000263187 CAMSAP1Q5T5Y3 1602 aa11.48□□□□□ -0.57
MSH4-201ENST00000263187 NME9Q86XW9 330 aa11.47□□□□□ -0.57
MSH4-201ENST00000263187 KRT24Q2M2I5 525 aa11.47□□□□□ -0.57
MSH4-201ENST00000263187 RRAGDQ9NQL2 400 aaPredicted RBP11.47□□□□□ -0.57
MSH4-201ENST00000263187 POLKQ9UBT6 870 aa11.47□□□□□ -0.57
MSH4-201ENST00000263187 IPO8O15397 1037 aaKnown RBP11.47□□□□□ -0.57
MSH4-201ENST00000263187 TRAK2O60296 914 aa11.47□□□□□ -0.57
MSH4-201ENST00000263187 HSP90AB1P08238 724 aaKnown RBP11.47□□□□□ -0.57
MSH4-201ENST00000263187 XRCC6P12956 609 aaKnown RBP eCLIP11.47□□□□□ -0.57
MSH4-201ENST00000263187 PLPPR3Q6T4P5 718 aa11.47□□□□□ -0.57
MSH4-201ENST00000263187 CHD1LQ86WJ1 897 aa11.47□□□□□ -0.57
MSH4-201ENST00000263187 CD2BP2O95400 341 aaKnown RBP11.46□□□□□ -0.57
MSH4-201ENST00000263187 HDAC1Q13547 482 aaPredicted RBP11.46□□□□□ -0.57
MSH4-201ENST00000263187 ABCC3O15438 1527 aa11.46□□□□□ -0.57
MSH4-201ENST00000263187 GOLGA6L3A6NEY3 463 aa11.46□□□□□ -0.58
MSH4-201ENST00000263187 ABCC11Q96J66 1382 aa11.45□□□□□ -0.58
MSH4-201ENST00000263187 SMC5Q8IY18 1101 aa11.45□□□□□ -0.58
MSH4-201ENST00000263187 C3P01024 1663 aa11.45□□□□□ -0.58
MSH4-201ENST00000263187 CHMP5Q9NZZ3 219 aa11.45□□□□□ -0.58
MSH4-201ENST00000263187 NUCB1Q02818 461 aa11.45□□□□□ -0.58
MSH4-201ENST00000263187 C8orf58Q8NAV2 365 aa11.45□□□□□ -0.58
MSH4-201ENST00000263187 AAMPQ13685 434 aa11.44□□□□□ -0.58
MSH4-201ENST00000263187 TXNDC2Q86VQ3 553 aa11.44□□□□□ -0.58
MSH4-201ENST00000263187 C16orf71Q8IYS4 520 aaPredicted RBP11.44□□□□□ -0.58
MSH4-201ENST00000263187 IFT172Q9UG01 1749 aa11.44□□□□□ -0.58
MSH4-201ENST00000263187 RSPH6AQ9H0K4 717 aa11.44□□□□□ -0.58
MSH4-201ENST00000263187 MBIPQ9NS73 344 aa11.44□□□□□ -0.58
MSH4-201ENST00000263187 KIF16BQ96L93 1317 aa11.43□□□□□ -0.58
MSH4-201ENST00000263187 RIMS1Q86UR5 1692 aaKnown RBP11.43□□□□□ -0.58
MSH4-201ENST00000263187 VAMP4O75379 141 aa11.43□□□□□ -0.58
MSH4-201ENST00000263187 SIRT2Q8IXJ6 389 aa11.43□□□□□ -0.58
MSH4-201ENST00000263187 MIS18AQ9NYP9 233 aa11.43□□□□□ -0.58
MSH4-201ENST00000263187 SETBP1Q9Y6X0 1596 aa11.42□□□□□ -0.58
MSH4-201ENST00000263187 PPLO60437 1756 aa11.42□□□□□ -0.58
MSH4-201ENST00000263187 ZBTB7BO15156 539 aaPredicted RBP11.42□□□□□ -0.58
MSH4-201ENST00000263187 MYO3AQ8NEV4 1616 aa11.42□□□□□ -0.58
MSH4-201ENST00000263187 FCHSD2O94868 740 aa11.42□□□□□ -0.58
MSH4-201ENST00000263187 TWISTNBQ3B726 338 aaPredicted RBP11.42□□□□□ -0.58
MSH4-201ENST00000263187 NSD2O96028 1365 aa11.42□□□□□ -0.58
MSH4-201ENST00000263187 TBC1D9Q6ZT07 1266 aa11.41□□□□□ -0.58
MSH4-201ENST00000263187 AEBP1Q8IUX7 1158 aa11.41□□□□□ -0.58
MSH4-201ENST00000263187 TNPO1Q92973 898 aaKnown RBP11.41□□□□□ -0.58
MSH4-201ENST00000263187 SMARCA5O60264 1052 aaPredicted RBP11.41□□□□□ -0.58
MSH4-201ENST00000263187 CT47B1P0C2W7 299 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms