RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CCDC184Q52MB2 194 aa22.96■■□□□ 1.27
UPF1-201ENST00000262803 CT47B1P0C2W7 299 aaPredicted RBP22.96■■□□□ 1.27
UPF1-201ENST00000262803 C9orf84Q5VXU9 1444 aa22.96■■□□□ 1.27
UPF1-201ENST00000262803 RPGRIP1LQ68CZ1 1315 aa22.95■■□□□ 1.27
UPF1-201ENST00000262803 SLC12A5Q9H2X9 1139 aa22.95■■□□□ 1.26
UPF1-201ENST00000262803 SLC52A1Q9NWF4 448 aa22.95■■□□□ 1.26
UPF1-201ENST00000262803 CT47A1Q5JQC4 288 aaPredicted RBP22.95■■□□□ 1.26
UPF1-201ENST00000262803 IFT140Q96RY7 1462 aa22.94■■□□□ 1.26
UPF1-201ENST00000262803 PDCP20941 246 aa22.94■■□□□ 1.26
UPF1-201ENST00000262803 CCDC173Q0VFZ6 552 aa22.94■■□□□ 1.26
UPF1-201ENST00000262803 ODF2Q5BJF6 829 aa22.94■■□□□ 1.26
UPF1-201ENST00000262803 WWC2Q6AWC2 1192 aa22.94■■□□□ 1.26
UPF1-201ENST00000262803 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.94■■□□□ 1.26
UPF1-201ENST00000262803 TRAK2O60296 914 aa22.94■■□□□ 1.26
UPF1-201ENST00000262803 CCDC27Q2M243 656 aa22.94■■□□□ 1.26
UPF1-201ENST00000262803 PROSER2Q86WR7 435 aaPredicted RBP22.94■■□□□ 1.26
UPF1-201ENST00000262803 BACH2Q9BYV9 841 aa22.94■■□□□ 1.26
UPF1-201ENST00000262803 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.93■■□□□ 1.26
UPF1-201ENST00000262803 TXNDC2Q86VQ3 553 aa22.93■■□□□ 1.26
UPF1-201ENST00000262803 TSR2Q969E8 191 aaKnown RBP22.93■■□□□ 1.26
UPF1-201ENST00000262803 AIMP1Q12904 312 aaKnown RBP22.93■■□□□ 1.26
UPF1-201ENST00000262803 TIAM1Q13009 1591 aa22.93■■□□□ 1.26
UPF1-201ENST00000262803 TEX35Q5T0J7 233 aa22.93■■□□□ 1.26
UPF1-201ENST00000262803 FAM13BQ9NYF5 915 aa22.93■■□□□ 1.26
UPF1-201ENST00000262803 TWISTNBQ3B726 338 aaPredicted RBP22.92■■□□□ 1.26
UPF1-201ENST00000262803 MYO6Q9UM54 1294 aa22.92■■□□□ 1.26
UPF1-201ENST00000262803 NUTM2GQ5VZR2 741 aa22.92■■□□□ 1.26
UPF1-201ENST00000262803 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.92■■□□□ 1.262e-6■■■□□ 14.9
UPF1-201ENST00000262803 ABTB2Q8N961 1025 aa22.92■■□□□ 1.26
UPF1-201ENST00000262803 AK7Q96M32 723 aa22.92■■□□□ 1.26
UPF1-201ENST00000262803 EPS15P42566 896 aa22.91■■□□□ 1.26
UPF1-201ENST00000262803 NASPP49321 788 aaPredicted RBP22.91■■□□□ 1.26
UPF1-201ENST00000262803 ARGLU1Q9NWB6 273 aaPredicted RBP22.91■■□□□ 1.26
UPF1-201ENST00000262803 FSD1Q9BTV5 496 aa22.91■■□□□ 1.26
UPF1-201ENST00000262803 WDR97A6NE52 1622 aa22.91■■□□□ 1.26
UPF1-201ENST00000262803 TXLNAP40222 546 aa22.91■■□□□ 1.26
UPF1-201ENST00000262803 HOMER1Q86YM7 354 aa22.91■■□□□ 1.26
UPF1-201ENST00000262803 VSIG10Q8N0Z9 540 aa22.91■■□□□ 1.26
UPF1-201ENST00000262803 SF3B2Q13435 895 aaKnown RBP22.9■■□□□ 1.26
UPF1-201ENST00000262803 C1orf115Q9H7X2 142 aa22.9■■□□□ 1.26
UPF1-201ENST00000262803 SPG7Q9UQ90 795 aa22.9■■□□□ 1.26
UPF1-201ENST00000262803 GCC1Q96CN9 775 aa22.9■■□□□ 1.26
UPF1-201ENST00000262803 NOB1Q9ULX3 412 aaKnown RBP22.9■■□□□ 1.26
UPF1-201ENST00000262803 MRC2Q9UBG0 1479 aa22.9■■□□□ 1.26
UPF1-201ENST00000262803 SURF6O75683 361 aaKnown RBP22.9■■□□□ 1.26
UPF1-201ENST00000262803 PRAM1Q96QH2 718 aa22.89■■□□□ 1.25
UPF1-201ENST00000262803 PRG4Q92954 1404 aaPredicted RBP22.89■■□□□ 1.25
UPF1-201ENST00000262803 FOSBP53539 338 aa22.89■■□□□ 1.25
UPF1-201ENST00000262803 NEK4P51957 841 aa22.89■■□□□ 1.25
UPF1-201ENST00000262803 CCDC158Q5M9N0 1113 aa22.89■■□□□ 1.25
UPF1-201ENST00000262803 RUFY1Q96T51 708 aa22.88■■□□□ 1.25
UPF1-201ENST00000262803 ZSCAN25Q6NSZ9 544 aa22.88■■□□□ 1.25
UPF1-201ENST00000262803 CCP110O43303 1012 aa22.88■■□□□ 1.25
UPF1-201ENST00000262803 TROQ12816 1431 aaPredicted RBP22.88■■□□□ 1.25
UPF1-201ENST00000262803 ESCO1Q5FWF5 840 aa22.87■■□□□ 1.25
UPF1-201ENST00000262803 CCT4P50991 539 aaKnown RBP22.87■■□□□ 1.25
UPF1-201ENST00000262803 RNF214Q8ND24 703 aa22.87■■□□□ 1.25
UPF1-201ENST00000262803 TOP2BQ02880 1626 aa22.87■■□□□ 1.25
UPF1-201ENST00000262803 OFD1O75665 1012 aa22.87■■□□□ 1.25
UPF1-201ENST00000262803 RABEP1Q15276 862 aa22.87■■□□□ 1.25
UPF1-201ENST00000262803 ZNF396Q96N95 335 aaPredicted RBP22.86■■□□□ 1.25
UPF1-201ENST00000262803 WDR63Q8IWG1 891 aa22.86■■□□□ 1.25
UPF1-201ENST00000262803 ERBINQ96RT1 1412 aa22.86■■□□□ 1.25
UPF1-201ENST00000262803 PRKCSHP14314 528 aaPredicted RBP22.85■■□□□ 1.25
UPF1-201ENST00000262803 CAVIN1Q6NZI2 390 aaKnown RBP22.85■■□□□ 1.25
UPF1-201ENST00000262803 NACAP1Q9BZK3 213 aa22.85■■□□□ 1.25
UPF1-201ENST00000262803 JMYQ8N9B5 988 aa22.84■■□□□ 1.25
UPF1-201ENST00000262803 MBD3O95983 291 aa22.84■■□□□ 1.25
UPF1-201ENST00000262803 IKQ13123 557 aaPredicted RBP22.84■■□□□ 1.25
UPF1-201ENST00000262803 GNAI2P04899 355 aa22.84■■□□□ 1.25
UPF1-201ENST00000262803 DAPK1P53355 1430 aa22.84■■□□□ 1.25
UPF1-201ENST00000262803 ANKRD1Q15327 319 aa22.84■■□□□ 1.25
UPF1-201ENST00000262803 IFT57Q9NWB7 429 aa22.83■■□□□ 1.25
UPF1-201ENST00000262803 ATAD2Q6PL18 1390 aa22.83■■□□□ 1.25
UPF1-201ENST00000262803 ERCC4Q92889 916 aaPredicted RBP22.83■■□□□ 1.25
UPF1-201ENST00000262803 CDK5RAP3Q96JB5 506 aa22.83■■□□□ 1.25
UPF1-201ENST00000262803 TXLNBQ8N3L3 684 aa22.83■■□□□ 1.24
UPF1-201ENST00000262803 ATF7IPQ6VMQ6 1270 aa22.82■■□□□ 1.24
UPF1-201ENST00000262803 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.82■■□□□ 1.24
UPF1-201ENST00000262803 PDIA4P13667 645 aaKnown RBP22.82■■□□□ 1.24
UPF1-201ENST00000262803 FILIP1LQ4L180 1135 aa22.82■■□□□ 1.24
UPF1-201ENST00000262803 KLHL34Q8N239 644 aa22.82■■□□□ 1.24
UPF1-201ENST00000262803 SMARCE1Q969G3 411 aa22.82■■□□□ 1.24
UPF1-201ENST00000262803 TTC39AQ5SRH9 613 aa22.82■■□□□ 1.24
UPF1-201ENST00000262803 ANKRD30BQ9BXX2 1392 aa22.82■■□□□ 1.24
UPF1-201ENST00000262803 MVPQ14764 893 aaKnown RBP22.81■■□□□ 1.24
UPF1-201ENST00000262803 CCDC39Q9UFE4 941 aa22.81■■□□□ 1.24
UPF1-201ENST00000262803 NAP1L1P55209 391 aaKnown RBP22.81■■□□□ 1.24
UPF1-201ENST00000262803 ANKLE2Q86XL3 938 aa22.81■■□□□ 1.24
UPF1-201ENST00000262803 MNS1Q8NEH6 495 aa22.81■■□□□ 1.24
UPF1-201ENST00000262803 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.81■■□□□ 1.245e-7■■■■■ 83.5
UPF1-201ENST00000262803 CCAR1Q8IX12 1150 aaKnown RBP22.81■■□□□ 1.24
UPF1-201ENST00000262803 ZNF428Q96B54 188 aa22.81■■□□□ 1.24
UPF1-201ENST00000262803 NAIPQ13075 1403 aa22.81■■□□□ 1.24
UPF1-201ENST00000262803 PRPF40AO75400 957 aaKnown RBP22.8■■□□□ 1.24
UPF1-201ENST00000262803 PHF23Q9BUL5 403 aaPredicted RBP22.8■■□□□ 1.24
UPF1-201ENST00000262803 BRPF3Q9ULD4 1205 aa22.8■■□□□ 1.24
UPF1-201ENST00000262803 CABP1Q9NZU7 370 aa22.8■■□□□ 1.24
UPF1-201ENST00000262803 HECW1Q76N89 1606 aa22.8■■□□□ 1.24
UPF1-201ENST00000262803 SLC4A2P04920 1241 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms