RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 FOXD4L3Q6VB84 417 aaPredicted RBP17.91■□□□□ 0.46
SDC1-201ENST00000254351 RNF214Q8ND24 703 aa17.91■□□□□ 0.46
SDC1-201ENST00000254351 APBB1O00213 710 aa17.9■□□□□ 0.46
SDC1-201ENST00000254351 JARID2Q92833 1246 aaPredicted RBP17.9■□□□□ 0.46
SDC1-201ENST00000254351 HECW2Q9P2P5 1572 aa17.9■□□□□ 0.46
SDC1-201ENST00000254351 GOLGA6L22H0YM25 854 aa17.89■□□□□ 0.46
SDC1-201ENST00000254351 RICTORQ6R327 1708 aa17.89■□□□□ 0.46
SDC1-201ENST00000254351 RAPGEF3O95398 923 aa17.89■□□□□ 0.45
SDC1-201ENST00000254351 CCDC173Q0VFZ6 552 aa17.89■□□□□ 0.45
SDC1-201ENST00000254351 PODXL2Q9NZ53 605 aa17.89■□□□□ 0.45
SDC1-201ENST00000254351 ZHX1Q9UKY1 873 aaPredicted RBP17.88■□□□□ 0.45
SDC1-201ENST00000254351 TMEM132EQ6IEE7 984 aa17.88■□□□□ 0.45
SDC1-201ENST00000254351 UNC13BO14795 1591 aa17.88■□□□□ 0.45
SDC1-201ENST00000254351 UQCRHLA0A096LP55 91 aa17.87■□□□□ 0.45
SDC1-201ENST00000254351 UQCRHP07919 91 aa17.87■□□□□ 0.45
SDC1-201ENST00000254351 NINLQ9Y2I6 1382 aa17.87■□□□□ 0.45
SDC1-201ENST00000254351 VIRMAQ69YN4 1812 aaKnown RBP17.87■□□□□ 0.45
SDC1-201ENST00000254351 ATF7IPQ6VMQ6 1270 aa17.86■□□□□ 0.45
SDC1-201ENST00000254351 TSC1Q92574 1164 aa17.86■□□□□ 0.45
SDC1-201ENST00000254351 ADGRF5Q8IZF2 1346 aa17.86■□□□□ 0.45
SDC1-201ENST00000254351 FRMPD1Q5SYB0 1578 aa17.86■□□□□ 0.45
SDC1-201ENST00000254351 K7ELQ4 463 aaPredicted RBP17.86■□□□□ 0.45
SDC1-201ENST00000254351 BAG4O95429 457 aaKnown RBP17.86■□□□□ 0.45
SDC1-201ENST00000254351 SMC5Q8IY18 1101 aa17.86■□□□□ 0.45
SDC1-201ENST00000254351 DDX19BQ9UMR2 479 aa17.86■□□□□ 0.45
SDC1-201ENST00000254351 PRPF40AO75400 957 aaKnown RBP17.85■□□□□ 0.45
SDC1-201ENST00000254351 CALD1Q05682 793 aaKnown RBP17.85■□□□□ 0.45
SDC1-201ENST00000254351 SKOR2Q2VWA4 1001 aaPredicted RBP17.85■□□□□ 0.45
SDC1-201ENST00000254351 KIF2CQ99661 725 aa17.85■□□□□ 0.45
SDC1-201ENST00000254351 CHD1LQ86WJ1 897 aa17.85■□□□□ 0.45
SDC1-201ENST00000254351 RBSNQ9H1K0 784 aa17.85■□□□□ 0.45
SDC1-201ENST00000254351 NSD3Q9BZ95 1437 aa17.85■□□□□ 0.45
SDC1-201ENST00000254351 OFD1O75665 1012 aa17.85■□□□□ 0.45
SDC1-201ENST00000254351 DDIT3P35638 169 aa17.85■□□□□ 0.45
SDC1-201ENST00000254351 WDR63Q8IWG1 891 aa17.85■□□□□ 0.45
SDC1-201ENST00000254351 FAM177BA6PVY3 158 aa17.84■□□□□ 0.45
SDC1-201ENST00000254351 PRIM1P49642 420 aaKnown RBP17.84■□□□□ 0.45
SDC1-201ENST00000254351 TBC1D9Q6ZT07 1266 aa17.84■□□□□ 0.45
SDC1-201ENST00000254351 CFAP53Q96M91 514 aa17.84■□□□□ 0.45
SDC1-201ENST00000254351 SCAF11Q99590 1463 aaKnown RBP17.83■□□□□ 0.44
SDC1-201ENST00000254351 EIF2AK4Q9P2K8 1649 aaKnown RBP17.83■□□□□ 0.44
SDC1-201ENST00000254351 RBM25P49756 843 aaKnown RBP17.83■□□□□ 0.44
SDC1-201ENST00000254351 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.83■□□□□ 0.44
SDC1-201ENST00000254351 NOL8Q76FK4 1167 aaKnown RBP17.83■□□□□ 0.44
SDC1-201ENST00000254351 DNTTIP2Q5QJE6 756 aaKnown RBP17.82■□□□□ 0.44
SDC1-201ENST00000254351 ABCA6Q8N139 1617 aa17.82■□□□□ 0.44
SDC1-201ENST00000254351 ZSCAN23Q3MJ62 389 aa17.82■□□□□ 0.44
SDC1-201ENST00000254351 AK9Q5TCS8 1911 aa17.82■□□□□ 0.44
SDC1-201ENST00000254351 HDAC1Q13547 482 aaPredicted RBP17.81■□□□□ 0.44
SDC1-201ENST00000254351 ISY1Q9ULR0 285 aaKnown RBP17.81■□□□□ 0.44
SDC1-201ENST00000254351 NUCB1Q02818 461 aa17.8■□□□□ 0.44
SDC1-201ENST00000254351 IQGAP3Q86VI3 1631 aa17.8■□□□□ 0.44
SDC1-201ENST00000254351 SYCE3A1L190 88 aa17.8■□□□□ 0.44
SDC1-201ENST00000254351 SNX21Q969T3 373 aa17.8■□□□□ 0.44
SDC1-201ENST00000254351 THUMPD2Q9BTF0 503 aaKnown RBP17.8■□□□□ 0.44
SDC1-201ENST00000254351 DEPDC5O75140 1603 aa17.8■□□□□ 0.44
SDC1-201ENST00000254351 PTMAP06454 111 aaKnown RBP17.79■□□□□ 0.44
SDC1-201ENST00000254351 ZGPATQ8N5A5 531 aaKnown RBP17.79■□□□□ 0.44
SDC1-201ENST00000254351 ZBTB40Q9NUA8 1239 aa17.79■□□□□ 0.44
SDC1-201ENST00000254351 DIP2CQ9Y2E4 1556 aa17.79■□□□□ 0.44
SDC1-201ENST00000254351 FBLN1P23142 703 aa17.79■□□□□ 0.44
SDC1-201ENST00000254351 GGNBP2Q9H3C7 697 aa17.79■□□□□ 0.44
SDC1-201ENST00000254351 PPP1R9BQ96SB3 815 aa17.78■□□□□ 0.44
SDC1-201ENST00000254351 KLHL40Q2TBA0 621 aa17.78■□□□□ 0.44
SDC1-201ENST00000254351 NGEFQ8N5V2 710 aa17.78■□□□□ 0.44
SDC1-201ENST00000254351 POLR3AO14802 1390 aaPredicted RBP17.77■□□□□ 0.44
SDC1-201ENST00000254351 AAMPQ13685 434 aa17.77■□□□□ 0.44
SDC1-201ENST00000254351 ZNF830Q96NB3 372 aaPredicted RBP17.77■□□□□ 0.44
SDC1-201ENST00000254351 CIZ1Q9ULV3 898 aaPredicted RBP17.77■□□□□ 0.44
SDC1-201ENST00000254351 NSFL1CQ9UNZ2 370 aaKnown RBP17.77■□□□□ 0.44
SDC1-201ENST00000254351 YEATS2Q9ULM3 1422 aa17.77■□□□□ 0.44
SDC1-201ENST00000254351 ATAD2Q6PL18 1390 aa17.77■□□□□ 0.43
SDC1-201ENST00000254351 KIF3BO15066 747 aa17.76■□□□□ 0.43
SDC1-201ENST00000254351 C16orf71Q8IYS4 520 aaPredicted RBP17.76■□□□□ 0.43
SDC1-201ENST00000254351 PRDM4Q9UKN5 801 aa17.76■□□□□ 0.43
SDC1-201ENST00000254351 TRHP20396 242 aaPredicted RBP17.76■□□□□ 0.43
SDC1-201ENST00000254351 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.76■□□□□ 0.43
SDC1-201ENST00000254351 CABP2Q9NPB3 220 aa17.75■□□□□ 0.43
SDC1-201ENST00000254351 TMPOP42166 694 aaKnown RBP17.75■□□□□ 0.43
SDC1-201ENST00000254351 SYNMO15061 1565 aa17.74■□□□□ 0.43
SDC1-201ENST00000254351 C17orf53Q8N3J3 647 aaPredicted RBP17.74■□□□□ 0.43
SDC1-201ENST00000254351 PLCB2Q00722 1185 aa17.74■□□□□ 0.43
SDC1-201ENST00000254351 MROH1Q8NDA8 1641 aa17.73■□□□□ 0.43
SDC1-201ENST00000254351 RNF17Q9BXT8 1623 aaKnown RBP17.73■□□□□ 0.43
SDC1-201ENST00000254351 VWDEQ8N2E2 1590 aa17.73■□□□□ 0.43
SDC1-201ENST00000254351 GPT2Q8TD30 523 aa17.73■□□□□ 0.43
SDC1-201ENST00000254351 PHF23Q9BUL5 403 aaPredicted RBP17.73■□□□□ 0.43
SDC1-201ENST00000254351 TRIM35Q9UPQ4 493 aa17.73■□□□□ 0.43
SDC1-201ENST00000254351 ERVK-7P63135 1459 aa17.73■□□□□ 0.43
SDC1-201ENST00000254351 BMP2KLQ5H9B9 411 aa17.72■□□□□ 0.43
SDC1-201ENST00000254351 BCL11BQ9C0K0 894 aaPredicted RBP17.72■□□□□ 0.43
SDC1-201ENST00000254351 NCOA3Q9Y6Q9 1424 aa17.72■□□□□ 0.43
SDC1-201ENST00000254351 KANK1Q14678 1352 aa17.72■□□□□ 0.43
SDC1-201ENST00000254351 NPC1L1Q9UHC9 1359 aa17.72■□□□□ 0.43
SDC1-201ENST00000254351 LMBRD1Q9NUN5 540 aa17.72■□□□□ 0.43
SDC1-201ENST00000254351 OTUD7AQ8TE49 926 aaPredicted RBP17.71■□□□□ 0.43
SDC1-201ENST00000254351 GDPD2Q9HCC8 539 aa17.71■□□□□ 0.43
SDC1-201ENST00000254351 STK26Q9P289 416 aa17.71■□□□□ 0.43
SDC1-201ENST00000254351 NOL7Q9UMY1 257 aaKnown RBP17.71■□□□□ 0.43
SDC1-201ENST00000254351 KIF16BQ96L93 1317 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms