RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 KIAA0586Q9BVV6 1533 aa15.88■□□□□ 0.13
MSH2-201ENST00000233146 RARSP54136 660 aaKnown RBP15.88■□□□□ 0.13
MSH2-201ENST00000233146 CREBRFQ8IUR6 639 aa15.88■□□□□ 0.13
MSH2-201ENST00000233146 MPNDQ8N594 471 aa15.88■□□□□ 0.13
MSH2-201ENST00000233146 KRT222Q8N1A0 295 aa15.88■□□□□ 0.13
MSH2-201ENST00000233146 NSFL1CQ9UNZ2 370 aaKnown RBP15.88■□□□□ 0.13
MSH2-201ENST00000233146 ERICH4A6NGS2 130 aa15.87■□□□□ 0.13
MSH2-201ENST00000233146 ABCC5O15440 1437 aa15.87■□□□□ 0.13
MSH2-201ENST00000233146 FAM53CQ9NYF3 392 aa15.87■□□□□ 0.13
MSH2-201ENST00000233146 DNMT1P26358 1616 aaKnown RBP15.86■□□□□ 0.13
MSH2-201ENST00000233146 UVSSAQ2YD98 709 aa15.86■□□□□ 0.13
MSH2-201ENST00000233146 AXDND1Q5T1B0 1012 aaPredicted RBP15.86■□□□□ 0.13
MSH2-201ENST00000233146 KIAA1524Q8TCG1 905 aa15.86■□□□□ 0.13
MSH2-201ENST00000233146 DISP3Q9P2K9 1392 aa15.86■□□□□ 0.13
MSH2-201ENST00000233146 PKD2Q13563 968 aa15.86■□□□□ 0.13
MSH2-201ENST00000233146 CDCA8Q53HL2 280 aa15.86■□□□□ 0.13
MSH2-201ENST00000233146 MYCNP04198 464 aaPredicted RBP15.85■□□□□ 0.13
MSH2-201ENST00000233146 HDAC1Q13547 482 aaPredicted RBP15.85■□□□□ 0.13
MSH2-201ENST00000233146 PKP1Q13835 747 aa15.85■□□□□ 0.13
MSH2-201ENST00000233146 KDM2AQ9Y2K7 1162 aa15.85■□□□□ 0.13
MSH2-201ENST00000233146 MBD3O95983 291 aa15.84■□□□□ 0.13
MSH2-201ENST00000233146 NOP2P46087 812 aaKnown RBP15.84■□□□□ 0.13
MSH2-201ENST00000233146 SAMD1Q6SPF0 538 aaPredicted RBP15.84■□□□□ 0.13
MSH2-201ENST00000233146 PIK3C2GO75747 1445 aa15.84■□□□□ 0.13
MSH2-201ENST00000233146 TRERF1Q96PN7 1200 aa15.84■□□□□ 0.13
MSH2-201ENST00000233146 HNRNPH2P55795 449 aaKnown RBP15.83■□□□□ 0.13
MSH2-201ENST00000233146 CC2D2AQ9P2K1 1620 aa15.83■□□□□ 0.12
MSH2-201ENST00000233146 APPP05067 770 aa15.83■□□□□ 0.12
MSH2-201ENST00000233146 MVPQ14764 893 aaKnown RBP15.83■□□□□ 0.12
MSH2-201ENST00000233146 ZNF622Q969S3 477 aaKnown RBP eCLIP15.83■□□□□ 0.121e-7■■■□□ 16.2
MSH2-201ENST00000233146 TESK2Q96S53 571 aa15.83■□□□□ 0.12
MSH2-201ENST00000233146 CEP170Q5SW79 1584 aa15.83■□□□□ 0.12
MSH2-201ENST00000233146 GRIN2AQ12879 1464 aa15.83■□□□□ 0.12
MSH2-201ENST00000233146 LOC102724159A0A0B4J2E5 919 aa15.83■□□□□ 0.12
MSH2-201ENST00000233146 RAD51AP2Q09MP3 1159 aa15.83■□□□□ 0.12
MSH2-201ENST00000233146 PWP2Q15269 919 aaKnown RBP15.83■□□□□ 0.12
MSH2-201ENST00000233146 CYP2C19P33261 490 aa15.82■□□□□ 0.12
MSH2-201ENST00000233146 FAM184AQ8NB25 1140 aa15.82■□□□□ 0.12
MSH2-201ENST00000233146 ADCY5O95622 1261 aa15.81■□□□□ 0.12
MSH2-201ENST00000233146 TNNT3P45378 269 aaPredicted RBP15.81■□□□□ 0.12
MSH2-201ENST00000233146 CWC22Q9HCG8 908 aaKnown RBP15.81■□□□□ 0.12
MSH2-201ENST00000233146 ZDHHC9Q9Y397 364 aa15.81■□□□□ 0.12
MSH2-201ENST00000233146 TRPM1Q7Z4N2 1603 aa15.81■□□□□ 0.12
MSH2-201ENST00000233146 USP25Q9UHP3 1055 aa15.81■□□□□ 0.12
MSH2-201ENST00000233146 RSPH14Q9UHP6 348 aa15.81■□□□□ 0.12
MSH2-201ENST00000233146 POLA1P09884 1462 aaPredicted RBP15.8■□□□□ 0.12
MSH2-201ENST00000233146 NESP48681 1621 aa15.8■□□□□ 0.12
MSH2-201ENST00000233146 MLECQ14165 292 aa15.79■□□□□ 0.12
MSH2-201ENST00000233146 SIRT1Q96EB6 747 aa15.79■□□□□ 0.12
MSH2-201ENST00000233146 PYCARDQ9ULZ3 195 aa15.79■□□□□ 0.12
MSH2-201ENST00000233146 BMP2KLQ5H9B9 411 aa15.79■□□□□ 0.12
MSH2-201ENST00000233146 WWC1Q8IX03 1113 aa15.79■□□□□ 0.12
MSH2-201ENST00000233146 DHX16O60231 1041 aaKnown RBP15.78■□□□□ 0.12
MSH2-201ENST00000233146 KCNF1Q9H3M0 494 aa15.78■□□□□ 0.12
MSH2-201ENST00000233146 SMTNL1A8MU46 457 aa15.78■□□□□ 0.12
MSH2-201ENST00000233146 CNPY4Q8N129 248 aa15.78■□□□□ 0.12
MSH2-201ENST00000233146 ERBINQ96RT1 1412 aa15.78■□□□□ 0.12
MSH2-201ENST00000233146 MAGI2Q86UL8 1455 aa15.77■□□□□ 0.12
MSH2-201ENST00000233146 GPRASP1Q5JY77 1395 aa15.77■□□□□ 0.12
MSH2-201ENST00000233146 PRR29P0C7W0 189 aa15.77■□□□□ 0.11
MSH2-201ENST00000233146 GTF2A1P52655 376 aaPredicted RBP15.77■□□□□ 0.11
MSH2-201ENST00000233146 CTR9Q6PD62 1173 aa15.77■□□□□ 0.11
MSH2-201ENST00000233146 RASSF4Q9H2L5 321 aa15.77■□□□□ 0.11
MSH2-201ENST00000233146 ANKRD36BQ8N2N9 1353 aa15.77■□□□□ 0.11
MSH2-201ENST00000233146 NAA30Q147X3 362 aaPredicted RBP15.76■□□□□ 0.11
MSH2-201ENST00000233146 KDM5DQ9BY66 1539 aa15.76■□□□□ 0.11
MSH2-201ENST00000233146 NUCB1Q02818 461 aa15.76■□□□□ 0.11
MSH2-201ENST00000233146 RABEP1Q15276 862 aa15.76■□□□□ 0.11
MSH2-201ENST00000233146 SYAP1Q96A49 352 aaPredicted RBP15.76■□□□□ 0.11
MSH2-201ENST00000233146 REC8O95072 547 aa15.76■□□□□ 0.11
MSH2-201ENST00000233146 TPM3P06753 285 aa15.76■□□□□ 0.11
MSH2-201ENST00000233146 ZNF397Q8NF99 534 aaPredicted RBP15.76■□□□□ 0.11
MSH2-201ENST00000233146 CHAMP1Q96JM3 812 aa15.76■□□□□ 0.11
MSH2-201ENST00000233146 KNSTRNQ9Y448 316 aa15.76■□□□□ 0.11
MSH2-201ENST00000233146 KIF1BPQ96EK5 621 aa15.75■□□□□ 0.11
MSH2-201ENST00000233146 MYCBPQ99417 103 aaPredicted RBP15.75■□□□□ 0.11
MSH2-201ENST00000233146 PRAG1Q86YV5 1406 aa15.75■□□□□ 0.11
MSH2-201ENST00000233146 UHRF1BP1LA0JNW5 1464 aa15.75■□□□□ 0.11
MSH2-201ENST00000233146 HMGXB3Q12766 1538 aa15.75■□□□□ 0.11
MSH2-201ENST00000233146 LAMC1P11047 1609 aa15.75■□□□□ 0.11
MSH2-201ENST00000233146 KMT5BQ4FZB7 885 aa15.74■□□□□ 0.11
MSH2-201ENST00000233146 TBC1D9Q6ZT07 1266 aa15.74■□□□□ 0.11
MSH2-201ENST00000233146 NCAPGQ9BPX3 1015 aa15.74■□□□□ 0.11
MSH2-201ENST00000233146 PHF14O94880 888 aa15.74■□□□□ 0.11
MSH2-201ENST00000233146 ICE2Q659A1 982 aa15.74■□□□□ 0.11
MSH2-201ENST00000233146 BCL2L13Q9BXK5 485 aa15.74■□□□□ 0.11
MSH2-201ENST00000233146 PRDM15P57071 1507 aaPredicted RBP15.74■□□□□ 0.11
MSH2-201ENST00000233146 WDR7Q9Y4E6 1490 aa15.74■□□□□ 0.11
MSH2-201ENST00000233146 BRPF1P55201 1214 aaPredicted RBP15.74■□□□□ 0.11
MSH2-201ENST00000233146 TMF1P82094 1093 aa15.74■□□□□ 0.11
MSH2-201ENST00000233146 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.74■□□□□ 0.11
MSH2-201ENST00000233146 LAMC3Q9Y6N6 1575 aa15.74■□□□□ 0.11
MSH2-201ENST00000233146 RBM6P78332 1123 aaKnown RBP15.73■□□□□ 0.11
MSH2-201ENST00000233146 ST7Q9NRC1 585 aa15.73■□□□□ 0.11
MSH2-201ENST00000233146 CFAP74Q9C0B2 1584 aa15.73■□□□□ 0.11
MSH2-201ENST00000233146 NOL10Q9BSC4 688 aaKnown RBP15.73■□□□□ 0.11
MSH2-201ENST00000233146 KDM4AO75164 1064 aa15.73■□□□□ 0.11
MSH2-201ENST00000233146 MUM1L1Q5H9M0 696 aa15.72■□□□□ 0.11
MSH2-201ENST00000233146 DZIP1LQ8IYY4 767 aaKnown RBP15.72■□□□□ 0.11
MSH2-201ENST00000233146 ZGPATQ8N5A5 531 aaKnown RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms