RNA–Protein interactions for RNA: ENST00000219084.10

CHD9-201, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 8,739 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-201ENST00000219084 COG6Q9Y2V7 657 aa5.3□□□□□ -1.56
CHD9-201ENST00000219084 WDR33Q9C0J8 1336 aaKnown RBP5.3□□□□□ -1.56
CHD9-201ENST00000219084 LUC7LQ9NQ29 371 aaKnown RBP5.29□□□□□ -1.56
CHD9-201ENST00000219084 DUOX2Q9NRD8 1548 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 TRAK2O60296 914 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 PAK3O75914 559 aaPredicted RBP5.29□□□□□ -1.56
CHD9-201ENST00000219084 TEFQ10587 303 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 CHMP3Q9Y3E7 222 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 SHANK2Q9UPX8 1470 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 SAFB2Q14151 953 aaKnown RBP eCLIP5.29□□□□□ -1.56
CHD9-201ENST00000219084 HOMER1Q86YM7 354 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 TTC5Q8N0Z6 440 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 MNS1Q8NEH6 495 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 GAS2L2Q8NHY3 880 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 CCDC192P0DO97 292 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 APAF1O14727 1248 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 BICD2Q8TD16 824 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 CSB-PGBD3P0DP91 1061 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 CCDC30Q5VVM6 783 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 CAVIN2O95810 425 aa5.29□□□□□ -1.56
CHD9-201ENST00000219084 KINO60870 393 aaKnown RBP5.28□□□□□ -1.56
CHD9-201ENST00000219084 CLSTN1O94985 981 aa5.28□□□□□ -1.56
CHD9-201ENST00000219084 MCTP1Q6DN14 999 aa5.28□□□□□ -1.56
CHD9-201ENST00000219084 CBFA2T2O43439 604 aa5.28□□□□□ -1.56
CHD9-201ENST00000219084 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.28□□□□□ -1.56
CHD9-201ENST00000219084 ASXL1Q8IXJ9 1541 aa5.28□□□□□ -1.56
CHD9-201ENST00000219084 SART3Q15020 963 aaKnown RBP5.28□□□□□ -1.56
CHD9-201ENST00000219084 PNISRQ8TF01 805 aaKnown RBP5.28□□□□□ -1.56
CHD9-201ENST00000219084 IFT57Q9NWB7 429 aa5.28□□□□□ -1.56
CHD9-201ENST00000219084 INSRP06213 1382 aa5.28□□□□□ -1.56
CHD9-201ENST00000219084 MCM3P25205 808 aa5.28□□□□□ -1.56
CHD9-201ENST00000219084 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.28□□□□□ -1.56
CHD9-201ENST00000219084 ZSCAN31Q96LW9 406 aaPredicted RBP5.27□□□□□ -1.57
CHD9-201ENST00000219084 TRAK1Q9UPV9 953 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 K7ELQ4 463 aaPredicted RBP5.27□□□□□ -1.57
CHD9-201ENST00000219084 EIF3JO75822 258 aaKnown RBP5.27□□□□□ -1.57
CHD9-201ENST00000219084 PPP2R1AP30153 589 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 USP8P40818 1118 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 SHROOM2Q13796 1616 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 TRHP20396 242 aaPredicted RBP5.27□□□□□ -1.57
CHD9-201ENST00000219084 ALDH1L2Q3SY69 923 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 CAGE1Q8TC20 777 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 CFAP45Q9UL16 551 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 ERLIN1O75477 346 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 CDKL5O76039 1030 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 UBTFL1P0CB47 393 aaPredicted RBP5.27□□□□□ -1.57
CHD9-201ENST00000219084 KRT32Q14532 448 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 RALYLQ86SE5 291 aaKnown RBP5.27□□□□□ -1.57
CHD9-201ENST00000219084 PLXNC1O60486 1568 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 LEKR1Q6ZMV7 388 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 TXLNAP40222 546 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 MVPQ14764 893 aaKnown RBP5.27□□□□□ -1.57
CHD9-201ENST00000219084 FILIP1LQ4L180 1135 aa5.27□□□□□ -1.57
CHD9-201ENST00000219084 PLIN1O60240 522 aa5.26□□□□□ -1.57
CHD9-201ENST00000219084 GNAI2P04899 355 aa5.26□□□□□ -1.57
CHD9-201ENST00000219084 SLC3A2P08195 630 aaKnown RBP5.26□□□□□ -1.57
CHD9-201ENST00000219084 SCAF11Q99590 1463 aaKnown RBP5.26□□□□□ -1.57
CHD9-201ENST00000219084 MARCH6O60337 910 aa5.26□□□□□ -1.57
CHD9-201ENST00000219084 ZNF692Q9BU19 519 aaPredicted RBP5.26□□□□□ -1.57
CHD9-201ENST00000219084 SLC52A1Q9NWF4 448 aa5.26□□□□□ -1.57
CHD9-201ENST00000219084 TEX14Q8IWB6 1497 aa5.26□□□□□ -1.57
CHD9-201ENST00000219084 SENP3-EIF4A1A0A087X0R7 540 aa5.26□□□□□ -1.57
CHD9-201ENST00000219084 FAM13BQ9NYF5 915 aa5.26□□□□□ -1.57
CHD9-201ENST00000219084 TCOF1Q13428 1488 aaKnown RBP5.26□□□□□ -1.57
CHD9-201ENST00000219084 HOMEZQ8IX15 550 aa5.26□□□□□ -1.57
CHD9-201ENST00000219084 NEMFO60524 1076 aa5.26□□□□□ -1.57
CHD9-201ENST00000219084 VSIG10Q8N0Z9 540 aa5.26□□□□□ -1.57
CHD9-201ENST00000219084 GRPEL1Q9HAV7 217 aa5.26□□□□□ -1.57
CHD9-201ENST00000219084 ERLIN2O94905 339 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 FKBP5Q13451 457 aaPredicted RBP5.25□□□□□ -1.57
CHD9-201ENST00000219084 CDK13Q14004 1512 aaKnown RBP5.25□□□□□ -1.57
CHD9-201ENST00000219084 MAST1Q9Y2H9 1570 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 LRPPRCP42704 1394 aaKnown RBP5.25□□□□□ -1.57
CHD9-201ENST00000219084 FAM107BQ9H098 131 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 RRP7AQ9Y3A4 280 aaKnown RBP5.25□□□□□ -1.57
CHD9-201ENST00000219084 CLASRPQ8N2M8 674 aaKnown RBP5.25□□□□□ -1.57
CHD9-201ENST00000219084 CCDC191Q8NCU4 936 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 UHRF1BP1Q6BDS2 1440 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 PRG4Q92954 1404 aaPredicted RBP5.25□□□□□ -1.57
CHD9-201ENST00000219084 STIM1Q13586 685 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.25□□□□□ -1.577e-7■■■□□ 15.1
CHD9-201ENST00000219084 TSPYL4Q9UJ04 414 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 PES1O00541 588 aaKnown RBP5.25□□□□□ -1.57
CHD9-201ENST00000219084 KRT85P78386 507 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 ATF7IPQ6VMQ6 1270 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 TCEAL9Q9UHQ7 104 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 MAPKBP1O60336 1514 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 GOLGA6L7A0A1B0GV03 622 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 RAB11FIP3O75154 756 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 ZSCAN25Q6NSZ9 544 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 CCAR2Q8N163 923 aaKnown RBP5.25□□□□□ -1.57
CHD9-201ENST00000219084 ZNF592Q92610 1267 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 FOXD4L1Q9NU39 408 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 KIAA0556O60303 1618 aa5.25□□□□□ -1.57
CHD9-201ENST00000219084 GOLGA6L10A6NI86 522 aa5.24□□□□□ -1.57
CHD9-201ENST00000219084 TUBB4BP68371 445 aa5.24□□□□□ -1.57
CHD9-201ENST00000219084 ZRSR2Q15696 482 aaKnown RBP5.24□□□□□ -1.57
CHD9-201ENST00000219084 ABCA5Q8WWZ7 1642 aa5.24□□□□□ -1.57
CHD9-201ENST00000219084 VPS37CA5D8V6 355 aaPredicted RBP5.24□□□□□ -1.57
CHD9-201ENST00000219084 TRIM5Q9C035 493 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms