RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 MCM2P49736 904 aa12.45□□□□□ -0.42
VCL-201ENST00000211998 FGD6Q6ZV73 1430 aa12.45□□□□□ -0.42
VCL-201ENST00000211998 CPLX1O14810 134 aa12.45□□□□□ -0.42
VCL-201ENST00000211998 CYB5RLQ6IPT4 315 aa12.45□□□□□ -0.42
VCL-201ENST00000211998 FAM177A1Q8N128 213 aaPredicted RBP12.45□□□□□ -0.42
VCL-201ENST00000211998 GTF2A1P52655 376 aaPredicted RBP12.45□□□□□ -0.42
VCL-201ENST00000211998 PSME1Q06323 249 aa12.45□□□□□ -0.42
VCL-201ENST00000211998 KINO60870 393 aaKnown RBP12.44□□□□□ -0.42
VCL-201ENST00000211998 POLR3GO15318 223 aaPredicted RBP12.44□□□□□ -0.42
VCL-201ENST00000211998 RUNDC1Q96C34 613 aa12.44□□□□□ -0.42
VCL-201ENST00000211998 BRD4O60885 1362 aaPredicted RBP12.44□□□□□ -0.42
VCL-201ENST00000211998 IBSPP21815 317 aaPredicted RBP12.44□□□□□ -0.42
VCL-201ENST00000211998 RUSC2Q8N2Y8 1516 aa12.44□□□□□ -0.42
VCL-201ENST00000211998 IFIT2P09913 472 aaKnown RBP12.44□□□□□ -0.42
VCL-201ENST00000211998 RIPK4P57078 832 aa12.44□□□□□ -0.42
VCL-201ENST00000211998 HSP90AB4PQ58FF6 505 aa12.44□□□□□ -0.42
VCL-201ENST00000211998 IGF1RP08069 1367 aa12.43□□□□□ -0.42
VCL-201ENST00000211998 GNAI1P63096 354 aa12.43□□□□□ -0.42
VCL-201ENST00000211998 NBPF1Q3BBV0 1214 aa12.43□□□□□ -0.42
VCL-201ENST00000211998 TNNT1P13805 278 aa12.43□□□□□ -0.42
VCL-201ENST00000211998 TNMDQ9H2S6 317 aa12.43□□□□□ -0.42
VCL-201ENST00000211998 EIF2S2P20042 333 aaKnown RBP12.43□□□□□ -0.42
VCL-201ENST00000211998 FAM193AP78312 1265 aa12.43□□□□□ -0.42
VCL-201ENST00000211998 DYDC1Q8WWB3 177 aa12.43□□□□□ -0.42
VCL-201ENST00000211998 GOLGA6L7A0A1B0GV03 622 aa12.42□□□□□ -0.42
VCL-201ENST00000211998 DHX8Q14562 1220 aaKnown RBP12.42□□□□□ -0.42
VCL-201ENST00000211998 GTPBP4Q9BZE4 634 aaKnown RBP12.42□□□□□ -0.42
VCL-201ENST00000211998 TRIM34Q9BYJ4 488 aa12.42□□□□□ -0.42
VCL-201ENST00000211998 MCM5P33992 734 aa12.41□□□□□ -0.42
VCL-201ENST00000211998 CCDC47Q96A33 483 aaKnown RBP12.41□□□□□ -0.42
VCL-201ENST00000211998 ADAMTS8Q9UP79 889 aa12.41□□□□□ -0.42
VCL-201ENST00000211998 FYCO1Q9BQS8 1478 aa12.41□□□□□ -0.42
VCL-201ENST00000211998 WDR33Q9C0J8 1336 aaKnown RBP12.41□□□□□ -0.42
VCL-201ENST00000211998 G3BP1Q13283 466 aaKnown RBP eCLIP12.41□□□□□ -0.423e-6■■■□□ 19
VCL-201ENST00000211998 PTPN14Q15678 1187 aa12.41□□□□□ -0.42
VCL-201ENST00000211998 PDE3AQ14432 1141 aa12.41□□□□□ -0.42
VCL-201ENST00000211998 FILIP1Q7Z7B0 1213 aa12.41□□□□□ -0.42
VCL-201ENST00000211998 LRRCC1Q9C099 1032 aa12.41□□□□□ -0.42
VCL-201ENST00000211998 XRCC6P12956 609 aaKnown RBP eCLIP12.4□□□□□ -0.422e-6■□□□□ 9.4
VCL-201ENST00000211998 GOLGA6L10A6NI86 522 aa12.4□□□□□ -0.42
VCL-201ENST00000211998 SERPINC1P01008 464 aa12.4□□□□□ -0.42
VCL-201ENST00000211998 SMARCE1Q969G3 411 aa12.4□□□□□ -0.42
VCL-201ENST00000211998 PRM3Q9NNZ6 103 aa12.4□□□□□ -0.42
VCL-201ENST00000211998 FKBP5Q13451 457 aaPredicted RBP12.4□□□□□ -0.43
VCL-201ENST00000211998 SKAP1Q86WV1 359 aa12.4□□□□□ -0.43
VCL-201ENST00000211998 PRIMPOLQ96LW4 560 aa12.4□□□□□ -0.43
VCL-201ENST00000211998 TRDNQ13061 729 aa12.39□□□□□ -0.43
VCL-201ENST00000211998 RAPGEF4Q8WZA2 1011 aa12.39□□□□□ -0.43
VCL-201ENST00000211998 ANKRD50Q9ULJ7 1429 aa12.39□□□□□ -0.43
VCL-201ENST00000211998 BCAR3O75815 825 aa12.39□□□□□ -0.43
VCL-201ENST00000211998 ERC2O15083 957 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 FAM69CQ0P6D2 419 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 TICAM2Q86XR7 235 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 RRBP1Q9P2E9 1410 aaKnown RBP12.38□□□□□ -0.43
VCL-201ENST00000211998 SHTN1A0MZ66 631 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 CCDC94Q9BW85 323 aaPredicted RBP12.38□□□□□ -0.43
VCL-201ENST00000211998 PDIA4P13667 645 aaKnown RBP12.38□□□□□ -0.43
VCL-201ENST00000211998 PDCP20941 246 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 VPS37DQ86XT2 251 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 SMAP1Q8IYB5 467 aaPredicted RBP12.38□□□□□ -0.43
VCL-201ENST00000211998 KIF18AQ8NI77 898 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 TSPYL4Q9UJ04 414 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 CTDP1Q9Y5B0 961 aaPredicted RBP12.38□□□□□ -0.43
VCL-201ENST00000211998 KIF2AO00139 706 aaPredicted RBP12.38□□□□□ -0.43
VCL-201ENST00000211998 CCDC184Q52MB2 194 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 INCENPQ9NQS7 918 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 TCEAL9Q9UHQ7 104 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 PRDM2Q13029 1718 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 ATF3P18847 181 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 PANK2Q9BZ23 570 aa12.38□□□□□ -0.43
VCL-201ENST00000211998 CEBPZQ03701 1054 aaKnown RBP12.37□□□□□ -0.43
VCL-201ENST00000211998 RAD54L2Q9Y4B4 1467 aa12.37□□□□□ -0.43
VCL-201ENST00000211998 CASKIN1Q8WXD9 1431 aa12.37□□□□□ -0.43
VCL-201ENST00000211998 ZRSR2Q15696 482 aaKnown RBP12.37□□□□□ -0.43
VCL-201ENST00000211998 FILIP1LQ4L180 1135 aa12.37□□□□□ -0.43
VCL-201ENST00000211998 TNPO1Q92973 898 aaKnown RBP12.37□□□□□ -0.43
VCL-201ENST00000211998 BRPF1P55201 1214 aaPredicted RBP12.37□□□□□ -0.43
VCL-201ENST00000211998 WWC1Q8IX03 1113 aa12.37□□□□□ -0.43
VCL-201ENST00000211998 DDX11Q96FC9 970 aa12.36□□□□□ -0.43
VCL-201ENST00000211998 C16orf45Q96MC5 204 aaPredicted RBP12.36□□□□□ -0.43
VCL-201ENST00000211998 TBC1D2Q9BYX2 928 aa12.36□□□□□ -0.43
VCL-201ENST00000211998 MYO6Q9UM54 1294 aa12.36□□□□□ -0.43
VCL-201ENST00000211998 LRRC9Q6ZRR7 1453 aa12.36□□□□□ -0.43
VCL-201ENST00000211998 KRT222Q8N1A0 295 aa12.36□□□□□ -0.43
VCL-201ENST00000211998 ZFP91Q96JP5 570 aaPredicted RBP12.36□□□□□ -0.43
VCL-201ENST00000211998 NUP62CLQ9H1M0 184 aa12.36□□□□□ -0.43
VCL-201ENST00000211998 ERICH2A1L162 156 aa12.36□□□□□ -0.43
VCL-201ENST00000211998 PSMA5P28066 241 aa12.36□□□□□ -0.43
VCL-201ENST00000211998 FAM107BQ9H098 131 aa12.36□□□□□ -0.43
VCL-201ENST00000211998 MEX3CQ5U5Q3 659 aaKnown RBP12.35□□□□□ -0.43
VCL-201ENST00000211998 USP25Q9UHP3 1055 aa12.35□□□□□ -0.43
VCL-201ENST00000211998 MNAT1P51948 309 aa12.35□□□□□ -0.43
VCL-201ENST00000211998 KRT85P78386 507 aa12.35□□□□□ -0.43
VCL-201ENST00000211998 BMS1Q14692 1282 aaKnown RBP12.35□□□□□ -0.43
VCL-201ENST00000211998 ARHGAP5Q13017 1502 aa12.35□□□□□ -0.43
VCL-201ENST00000211998 ODF2Q5BJF6 829 aa12.34□□□□□ -0.43
VCL-201ENST00000211998 GCC1Q96CN9 775 aa12.34□□□□□ -0.43
VCL-201ENST00000211998 LMAN1P49257 510 aa12.34□□□□□ -0.43
VCL-201ENST00000211998 SYTL4Q96C24 671 aaPredicted RBP12.34□□□□□ -0.43
VCL-201ENST00000211998 NCOA2Q15596 1464 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms