RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 RRM1P23921 792 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 RDXP35241 583 aaKnown RBP26.71■■□□□ 1.87
TRIM28-204ENST00000594806 RFC1P35251 1148 aaPredicted RBP26.71■■□□□ 1.87
TRIM28-204ENST00000594806 DGKGP49619 791 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 MAPK8IP2Q13387 824 aaPredicted RBP26.71■■□□□ 1.87
TRIM28-204ENST00000594806 PPP1R15BQ5SWA1 713 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 NAIF1Q69YI7 327 aaPredicted RBP26.71■■□□□ 1.87
TRIM28-204ENST00000594806 NADSYN1Q6IA69 706 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 PLEKHA7Q6IQ23 1121 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 TRNP1Q6NT89 227 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 STRADAQ7RTN6 431 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 PHLDB2Q86SQ0 1253 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 C1orf210Q8IVY1 113 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 SPEM1Q8N4L4 309 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 EMC1Q8N766 993 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 CFAP57Q96MR6 1250 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 IRF2BPLQ9H1B7 796 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 RBM12Q9NTZ6 932 aaKnown RBP26.71■■□□□ 1.87
TRIM28-204ENST00000594806 PIGVQ9NUD9 493 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 ARHGEF38Q9NXL2 777 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 SLC27A6Q9Y2P4 619 aa26.71■■□□□ 1.87
TRIM28-204ENST00000594806 ARIH1Q9Y4X5 557 aaPredicted RBP26.71■■□□□ 1.87
TRIM28-204ENST00000594806 CACNA1IQ9P0X4 2223 aa26.7■■□□□ 1.87
TRIM28-204ENST00000594806 PLEKP08567 350 aaPredicted RBP26.7■■□□□ 1.86
TRIM28-204ENST00000594806 GPD1P21695 349 aa26.7■■□□□ 1.86
TRIM28-204ENST00000594806 SLC6A4P31645 630 aa26.7■■□□□ 1.86
TRIM28-204ENST00000594806 CCDC14Q49A88 953 aa26.7■■□□□ 1.86
TRIM28-204ENST00000594806 MS4A13Q5J8X5 152 aa26.7■■□□□ 1.86
TRIM28-204ENST00000594806 DCUN1D2Q6PH85 259 aa26.7■■□□□ 1.86
TRIM28-204ENST00000594806 WDR59Q6PJI9 974 aa26.7■■□□□ 1.86
TRIM28-204ENST00000594806 TERB1Q8NA31 727 aa26.7■■□□□ 1.86
TRIM28-204ENST00000594806 HJURPQ8NCD3 748 aaPredicted RBP26.7■■□□□ 1.86
TRIM28-204ENST00000594806 JOSD2Q8TAC2 188 aa26.7■■□□□ 1.86
TRIM28-204ENST00000594806 SPATA6Q9NWH7 488 aaPredicted RBP26.7■■□□□ 1.86
TRIM28-204ENST00000594806 PLK2Q9NYY3 685 aa26.7■■□□□ 1.86
TRIM28-204ENST00000594806 ATG2BQ96BY7 2078 aa26.69■■□□□ 1.86
TRIM28-204ENST00000594806 TBC1D3BA6NDS4 549 aa26.69■■□□□ 1.86
TRIM28-204ENST00000594806 CHURC1-FNTBB4DL54 471 aa26.69■■□□□ 1.86
TRIM28-204ENST00000594806 CISD3P0C7P0 127 aa26.69■■□□□ 1.86
TRIM28-204ENST00000594806 TFE3P19532 575 aaPredicted RBP26.69■■□□□ 1.86
TRIM28-204ENST00000594806 CCR3P51677 355 aa26.69■■□□□ 1.86
TRIM28-204ENST00000594806 ADKP55263 362 aaKnown RBP26.69■■□□□ 1.86
TRIM28-204ENST00000594806 MRPS21P82921 87 aaKnown RBP26.69■■□□□ 1.86
TRIM28-204ENST00000594806 MAMLD1Q13495 774 aa26.69■■□□□ 1.86
TRIM28-204ENST00000594806 HSF5Q4G112 596 aaPredicted RBP26.69■■□□□ 1.86
TRIM28-204ENST00000594806 RNF43Q68DV7 783 aa26.69■■□□□ 1.86
TRIM28-204ENST00000594806 CENPIQ92674 756 aaPredicted RBP26.69■■□□□ 1.86
TRIM28-204ENST00000594806 BHMTQ93088 406 aa26.69■■□□□ 1.86
TRIM28-204ENST00000594806 MRPL47Q9HD33 250 aaKnown RBP26.69■■□□□ 1.86
TRIM28-204ENST00000594806 CALCOCO1Q9P1Z2 691 aa26.69■■□□□ 1.86
TRIM28-204ENST00000594806 SCINQ9Y6U3 715 aa26.69■■□□□ 1.86
TRIM28-204ENST00000594806 A0A087X0T9 212 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 GOLGA6L7A0A1B0GV03 622 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 F5H5T6 163 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 K7EQS6 105 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 TSPAN3O60637 253 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 FAM228BP0C875 321 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 TACR2P21452 398 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 HOXD9P28356 352 aaPredicted RBP26.68■■□□□ 1.86
TRIM28-204ENST00000594806 EIF4A3P38919 411 aaKnown RBP26.68■■□□□ 1.86
TRIM28-204ENST00000594806 ZNF143P52747 638 aaPredicted RBP26.68■■□□□ 1.86
TRIM28-204ENST00000594806 KDSRQ06136 332 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 MTAPQ13126 283 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 E2F5Q15329 346 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 TTC39BQ5VTQ0 682 aaPredicted RBP26.68■■□□□ 1.86
TRIM28-204ENST00000594806 ALKBH5Q6P6C2 394 aaKnown RBP26.68■■□□□ 1.86
TRIM28-204ENST00000594806 RFWD3Q6PCD5 774 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 CHSY1Q86X52 802 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 EZH1Q92800 747 aaPredicted RBP26.68■■□□□ 1.86
TRIM28-204ENST00000594806 ZNF653Q96CK0 615 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 MCEEQ96PE7 176 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 ADAM33Q9BZ11 813 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 TKTL2Q9H0I9 626 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 DEF6Q9H4E7 631 aa26.68■■□□□ 1.86
TRIM28-204ENST00000594806 CNOT8Q9UFF9 292 aaKnown RBP26.68■■□□□ 1.86
TRIM28-204ENST00000594806 MYO18AQ92614 2054 aaKnown RBP26.67■■□□□ 1.86
TRIM28-204ENST00000594806 LAMTOR5O43504 91 aa26.67■■□□□ 1.86
TRIM28-204ENST00000594806 RNF40O75150 1001 aa26.67■■□□□ 1.86
TRIM28-204ENST00000594806 ATP11AP98196 1134 aa26.67■■□□□ 1.86
TRIM28-204ENST00000594806 SLC18A3Q16572 532 aa26.67■■□□□ 1.86
TRIM28-204ENST00000594806 CCDC117Q8IWD4 279 aaPredicted RBP26.67■■□□□ 1.86
TRIM28-204ENST00000594806 ACDQ96AP0 544 aa26.67■■□□□ 1.86
TRIM28-204ENST00000594806 C1orf74Q96LT6 269 aa26.67■■□□□ 1.86
TRIM28-204ENST00000594806 HAPLN3Q96S86 360 aa26.67■■□□□ 1.86
TRIM28-204ENST00000594806 PRMT1Q99873 361 aaKnown RBP26.67■■□□□ 1.86
TRIM28-204ENST00000594806 CNPY3Q9BT09 278 aa26.67■■□□□ 1.86
TRIM28-204ENST00000594806 XPO7Q9UIA9 1087 aaKnown RBP26.67■■□□□ 1.86
TRIM28-204ENST00000594806 FBXO4Q9UKT5 387 aa26.67■■□□□ 1.86
TRIM28-204ENST00000594806 STARD13Q9Y3M8 1113 aa26.67■■□□□ 1.86
TRIM28-204ENST00000594806 TBL1XO60907 577 aa26.66■■□□□ 1.86
TRIM28-204ENST00000594806 PAGE1O75459 146 aa26.66■■□□□ 1.86
TRIM28-204ENST00000594806 PAPSS2O95340 614 aaPredicted RBP26.66■■□□□ 1.86
TRIM28-204ENST00000594806 GJB6O95452 261 aa26.66■■□□□ 1.86
TRIM28-204ENST00000594806 ADCY5O95622 1261 aa26.66■■□□□ 1.86
TRIM28-204ENST00000594806 COL9A1P20849 921 aa26.66■■□□□ 1.86
TRIM28-204ENST00000594806 CXCL12P48061 93 aa26.66■■□□□ 1.86
TRIM28-204ENST00000594806 GAS6Q14393 721 aa26.66■■□□□ 1.86
TRIM28-204ENST00000594806 ARL13BQ3SXY8 428 aa26.66■■□□□ 1.86
TRIM28-204ENST00000594806 RABGAP1LQ5R372 815 aa26.66■■□□□ 1.86
TRIM28-204ENST00000594806 CCDC122Q5T0U0 273 aa26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms