RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeastyeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAR1Q0140 YOL166W-AQ8TGJ1 51 aa-7.81□□□□□ -3.66
VAR1Q0140 BCK1Q01389 1478 aa-7.83□□□□□ -3.66
VAR1Q0140 YMR105W-AQ8TGS8 64 aa-7.88□□□□□ -3.67
VAR1Q0140 YDR034C-AP0C289 58 aa-7.93□□□□□ -3.68
VAR1Q0140 RPL29P05747 59 aaPredicted RBP-7.94□□□□□ -3.68
VAR1Q0140 YSY6P38374 65 aa-7.97□□□□□ -3.69
VAR1Q0140 VMR1P38735 1592 aa-8.01□□□□□ -3.69
VAR1Q0140 RPO31P04051 1460 aa-8.04□□□□□ -3.7
VAR1Q0140 YFL041W-AQ3E817 63 aa-8.04□□□□□ -3.7
VAR1Q0140 YOR316C-AQ3E806 69 aa-8.07□□□□□ -3.7
VAR1Q0140 DOP1Q03921 1698 aa-8.13□□□□□ -3.71
VAR1Q0140 YHR213W-AQ8TGT4 77 aa-8.23□□□□□ -3.73
VAR1Q0140 FLO1P32768 1537 aa-8.24□□□□□ -3.73
VAR1Q0140 PDR5P33302 1511 aaKnown RBP-8.27□□□□□ -3.73
VAR1Q0140 VPS13Q07878 3144 aa-8.34□□□□□ -3.74
VAR1Q0140 TCB3Q03640 1545 aaKnown RBP-8.37□□□□□ -3.75
VAR1Q0140 YIL102C-AQ2V2P5 75 aa-8.46□□□□□ -3.76
VAR1Q0140 NUP159P40477 1460 aa-8.51□□□□□ -3.77
VAR1Q0140 SCC2Q04002 1493 aa-8.59□□□□□ -3.78
VAR1Q0140 YPR010C-AA5Z2X5 72 aa-8.64□□□□□ -3.79
VAR1Q0140 YHR073W-AP0C5N7 58 aa-8.65□□□□□ -3.79
VAR1Q0140 PAI3P01094 68 aa-8.66□□□□□ -3.8
VAR1Q0140 SSK2P53599 1579 aa-8.67□□□□□ -3.8
VAR1Q0140 YCF1P39109 1515 aaKnown RBP-8.73□□□□□ -3.81
VAR1Q0140 ULS1Q08562 1619 aa-8.8□□□□□ -3.82
VAR1Q0140 YBT1P32386 1661 aa-8.87□□□□□ -3.83
VAR1Q0140 NUP188P52593 1655 aaKnown RBP-8.95□□□□□ -3.84
VAR1Q0140 MYO4P32492 1471 aa-9.02□□□□□ -3.85
VAR1Q0140 YJL133C-AQ3E7A3 74 aa-9.15□□□□□ -3.87
VAR1Q0140 GCN2P15442 1659 aa-9.17□□□□□ -3.88
VAR1Q0140 STU1P38198 1513 aa-9.4□□□□□ -3.91
VAR1Q0140 DDR2P89113 61 aa-9.42□□□□□ -3.92
VAR1Q0140 CDC25P04821 1589 aa-9.46□□□□□ -3.92
VAR1Q0140 TOM1Q03280 3268 aa-9.48□□□□□ -3.93
VAR1Q0140 ATG2P53855 1592 aa-9.48□□□□□ -3.93
VAR1Q0140 SKI3P17883 1432 aaKnown RBP-9.48□□□□□ -3.93
VAR1Q0140 BUD3P25558 1636 aa-9.54□□□□□ -3.94
VAR1Q0140 COX9P07255 59 aa-9.55□□□□□ -3.94
VAR1Q0140 VMA9Q3E7B6 73 aa-9.68□□□□□ -3.96
VAR1Q0140 YKL023C-AQ2V2P3 75 aa-9.73□□□□□ -3.97
VAR1Q0140 YLR342W-AQ3E810 57 aa-10.04□□□□□ -4.02
VAR1Q0140 NUP170P38181 1502 aa-10.06□□□□□ -4.02
VAR1Q0140 HIR3P47171 1648 aa-10.15□□□□□ -4.03
VAR1Q0140 YLL066W-BQ8TGJ7 56 aa-10.17□□□□□ -4.04
VAR1Q0140 NUP192P47054 1683 aa-10.37□□□□□ -4.07
VAR1Q0140 PEP1P32319 1579 aa-10.41□□□□□ -4.08
VAR1Q0140 YJL127C-BQ3E828 52 aa-10.44□□□□□ -4.08
VAR1Q0140 USO1P25386 1790 aa-10.51□□□□□ -4.09
VAR1Q0140 PMP3P87284 55 aa-10.51□□□□□ -4.09
VAR1Q0140 YFR010W-AP0C5N0 62 aa-10.58□□□□□ -4.1
VAR1Q0140 MON2P48563 1636 aaPredicted RBP-11.04□□□□□ -4.18
VAR1Q0140 SMX2P40204 77 aaKnown RBP-11.06□□□□□ -4.18
VAR1Q0140 RKR1Q04781 1562 aa-11.13□□□□□ -4.19
VAR1Q0140 HOR7Q05827 59 aa-11.17□□□□□ -4.2
VAR1Q0140 SPT6P23615 1451 aaKnown RBP-11.19□□□□□ -4.2
VAR1Q0140 CHC1P22137 1653 aaKnown RBP-11.2□□□□□ -4.2
VAR1Q0140 TOM7P53507 60 aa-11.34□□□□□ -4.22
VAR1Q0140 MLP2P40457 1679 aa-11.63□□□□□ -4.27
VAR1Q0140 NCE101Q02820 53 aa-12.9□□□□□ -4.47
VAR1Q0140 Q0297Q9ZZV8 51 aa-13.16□□□□□ -4.52
VAR1Q0140 RPL39P04650 51 aa-13.44□□□□□ -4.56
VAR1Q0140 YIL046W-AQ3E7Z4 54 aa-14.62□□□□□ -4.75
VAR1Q0140 YDR034W-BQ6Q5X2 51 aa-16.09□□□□□ -4.99
Retrieved 63 of 5,963 RNA–protein pairs in 57.3 ms