RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR40, Length 97 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR40	snR40	SOD2	P00447	233 aa		0.5	□□□□□ -2.33
snR40	snR40	DED81	P38707	554 aa	Known RBP	0.5	□□□□□ -2.33
snR40	snR40	ALA1	P40825	983 aa	Known RBP	0.5	□□□□□ -2.33
snR40	snR40	TY4A-H	Q6Q5P6	413 aa		0.5	□□□□□ -2.33
snR40	snR40	ALD2	P47771	506 aa		0.49	□□□□□ -2.33
snR40	snR40	FPK1	P53739	893 aa		0.49	□□□□□ -2.33
snR40	snR40	ATG20	Q07528	640 aa		0.49	□□□□□ -2.33
snR40	snR40	RPS31	P05759	152 aa	Known RBP	0.48	□□□□□ -2.33
snR40	snR40	RGP1	P16664	663 aa		0.48	□□□□□ -2.33
snR40	snR40	CHS7	P38843	316 aa		0.48	□□□□□ -2.33
snR40	snR40	UTP7	P40055	554 aa	Known RBP	0.48	□□□□□ -2.33
snR40	snR40	SUM1	P46676	1062 aa		0.48	□□□□□ -2.33
snR40	snR40	SUN4	P53616	420 aa		0.48	□□□□□ -2.33
snR40	snR40	ORC3	P54790	616 aa		0.48	□□□□□ -2.33
snR40	snR40	MET30	P39014	640 aa		0.47	□□□□□ -2.33
snR40	snR40	DSE4	P53753	1117 aa		0.47	□□□□□ -2.33
snR40	snR40	PRE10	P21242	288 aa	Known RBP RIP-Chip data	0.46	□□□□□ -2.34	not detected
snR40	snR40	TFA1	P36100	482 aa		0.46	□□□□□ -2.34
snR40	snR40	TEA1	P47988	759 aa		0.46	□□□□□ -2.34
snR40	snR40	MRPL22	P53881	309 aa		0.46	□□□□□ -2.34
snR40	snR40	YPL277C	Q08989	487 aa		0.46	□□□□□ -2.34
snR40	snR40	ERS1	P17261	260 aa		0.45	□□□□□ -2.34
snR40	snR40	TED1	P40533	473 aa		0.45	□□□□□ -2.34
snR40	snR40	SEC5	P89102	971 aa		0.45	□□□□□ -2.34
snR40	snR40	YMR196W	Q04336	1088 aa		0.45	□□□□□ -2.34
snR40	snR40	YPR084W	Q06821	456 aa		0.45	□□□□□ -2.34
snR40	snR40	SPT2	P06843	333 aa	Predicted RBP	0.44	□□□□□ -2.34
snR40	snR40	MPT5	P39016	859 aa	Known RBP RIP-Chip data	0.44	□□□□□ -2.34	not detected
snR40	snR40	GIS2	P53849	153 aa	Known RBP RIP-Chip data	0.44	□□□□□ -2.34	not detected
snR40	snR40	PPM2	Q08282	695 aa		0.44	□□□□□ -2.34
snR40	snR40	NSI1	Q12457	570 aa		0.44	□□□□□ -2.34
snR40	snR40	MRP10	O75012	95 aa		0.43	□□□□□ -2.34
snR40	snR40	RPS13	P05756	151 aa	Known RBP	0.43	□□□□□ -2.34
snR40	snR40	DAT1	P13483	248 aa	Known RBP	0.43	□□□□□ -2.34
snR40	snR40	STB2	P46679	850 aa		0.43	□□□□□ -2.34
snR40	snR40	HOF1	Q05080	669 aa		0.43	□□□□□ -2.34
snR40	snR40	PDI1	P17967	522 aa	Known RBP	0.42	□□□□□ -2.34
snR40	snR40	SCJ1	P25303	377 aa		0.42	□□□□□ -2.34
snR40	snR40	TAT2	P38967	592 aa		0.42	□□□□□ -2.34
snR40	snR40	AIM21	P40563	679 aa		0.42	□□□□□ -2.34
snR40	snR40	NCE103	P53615	221 aa		0.42	□□□□□ -2.34
snR40	snR40	YDL177C	Q12257	170 aa		0.42	□□□□□ -2.34
snR40	snR40	TEC1	P18412	486 aa		0.41	□□□□□ -2.34
snR40	snR40	UTR2	P32623	467 aa		0.41	□□□□□ -2.34
snR40	snR40	GIP2	P40036	548 aa		0.41	□□□□□ -2.34
snR40	snR40	YER158C	P40095	573 aa		0.41	□□□□□ -2.34
snR40	snR40	GIC2	Q06648	383 aa		0.41	□□□□□ -2.34
snR40	snR40	NDJ1	Q12366	352 aa		0.41	□□□□□ -2.34
snR40	snR40	MDM10	P18409	493 aa		0.4	□□□□□ -2.35
snR40	snR40	ADP1	P25371	1049 aa		0.39	□□□□□ -2.35
snR40	snR40	TBS1	P38114	1094 aa		0.39	□□□□□ -2.35
snR40	snR40	NCL1	P38205	684 aa	Known RBP	0.39	□□□□□ -2.35
snR40	snR40	RSC30	P38781	883 aa		0.39	□□□□□ -2.35
snR40	snR40	CIT3	P43635	486 aa		0.39	□□□□□ -2.35
snR40	snR40	GLO1	P50107	326 aa		0.39	□□□□□ -2.35
snR40	snR40	HST2	P53686	357 aa		0.39	□□□□□ -2.35
snR40	snR40	LPX1	Q12405	387 aa	Known RBP	0.39	□□□□□ -2.35
snR40	snR40	PMI40	P29952	429 aa	Known RBP	0.38	□□□□□ -2.35
snR40	snR40	MMM1	P41800	426 aa		0.38	□□□□□ -2.35
snR40	snR40	STE4	P18851	423 aa		0.37	□□□□□ -2.35
snR40	snR40	WHI3	P34761	661 aa	Known RBP	0.37	□□□□□ -2.35
snR40	snR40	OAR1	P35731	278 aa		0.37	□□□□□ -2.35
snR40	snR40	OYE3	P41816	400 aa	Predicted RBP	0.37	□□□□□ -2.35
snR40	snR40	URN1	Q06525	465 aa	Known RBP	0.37	□□□□□ -2.35
snR40	snR40	MOH1	P38191	138 aa		0.36	□□□□□ -2.35
snR40	snR40	QRI1	P43123	477 aa	Known RBP	0.36	□□□□□ -2.35
snR40	snR40	SKP1	P52286	194 aa		0.36	□□□□□ -2.35
snR40	snR40	SOK2	P53438	785 aa	Predicted RBP	0.36	□□□□□ -2.35
snR40	snR40	RCM1	P53972	490 aa		0.36	□□□□□ -2.35
snR40	snR40	HCM1	P25364	564 aa		0.35	□□□□□ -2.35
snR40	snR40	YTA6	P40328	754 aa		0.35	□□□□□ -2.35
snR40	snR40	ZAP1	P47043	880 aa		0.35	□□□□□ -2.35
snR40	snR40	UBA2	P52488	636 aa		0.35	□□□□□ -2.35
snR40	snR40	YPR148C	Q06523	435 aa		0.35	□□□□□ -2.35
snR40	snR40	YOR059C	Q08448	450 aa	Known RBP	0.35	□□□□□ -2.35
snR40	snR40	GUT2	P32191	649 aa		0.34	□□□□□ -2.36
snR40	snR40	SLX8	P40072	274 aa		0.34	□□□□□ -2.36
snR40	snR40	YNL165W	P53891	406 aa		0.34	□□□□□ -2.36
snR40	snR40	SSY1	Q03770	852 aa		0.34	□□□□□ -2.36
snR40	snR40	YPQ2	Q06328	317 aa		0.34	□□□□□ -2.36
snR40	snR40	NTO1	Q12311	748 aa		0.34	□□□□□ -2.36
snR40	snR40	IDI1	P15496	288 aa		0.33	□□□□□ -2.36
snR40	snR40	ESS1	P22696	170 aa		0.33	□□□□□ -2.36
snR40	snR40	YJU3	P28321	313 aa		0.33	□□□□□ -2.36
snR40	snR40	YNR040W	P53736	256 aa		0.33	□□□□□ -2.36
snR40	snR40	MAE1	P36013	669 aa	Known RBP	0.32	□□□□□ -2.36
snR40	snR40	ISR1	Q06098	443 aa	Known RBP	0.32	□□□□□ -2.36
snR40	snR40	ETP1	P38748	585 aa	Known RBP	0.31	□□□□□ -2.36
snR40	snR40	PAN5	P38787	379 aa		0.31	□□□□□ -2.36
snR40	snR40	MRPS35	P53292	345 aa		0.31	□□□□□ -2.36
snR40	snR40	KIN4	Q01919	800 aa		0.31	□□□□□ -2.36
snR40	snR40	YDJ1	P25491	409 aa	Known RBP	0.3	□□□□□ -2.36
snR40	snR40	PEX2	P32800	271 aa		0.3	□□□□□ -2.36
snR40	snR40	APM2	P38700	605 aa		0.3	□□□□□ -2.36
snR40	snR40	STU2	P46675	888 aa		0.3	□□□□□ -2.36
snR40	snR40	BPL1	P48445	690 aa	Predicted RBP	0.3	□□□□□ -2.36
snR40	snR40	SNO2	P53823	222 aa		0.3	□□□□□ -2.36
snR40	snR40	CUS1	Q02554	436 aa	Predicted RBP	0.3	□□□□□ -2.36
snR40	snR40	YDR132C	Q03900	495 aa		0.3	□□□□□ -2.36
snR40	snR40	TDA9	Q04545	1251 aa		0.3	□□□□□ -2.36

Retrieved 100 of 5,963 RNA–protein pairs in 127.1 ms