RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W NOC3Q07896 663 aaPredicted RBP7.93□□□□□ -1.14
PRP40YKL012W CLN2P20438 545 aa7.92□□□□□ -1.14
PRP40YKL012W PEP7P32609 515 aa7.92□□□□□ -1.14
PRP40YKL012W RTT106P40161 455 aa7.92□□□□□ -1.14
PRP40YKL012W BSC2Q05611 235 aa7.92□□□□□ -1.14
PRP40YKL012W Q0182Q9ZZW1 134 aa7.92□□□□□ -1.14
PRP40YKL012W CYC8P14922 966 aa7.92□□□□□ -1.14
PRP40YKL012W HED1Q03937 162 aa7.92□□□□□ -1.14
PRP40YKL012W VRP1P37370 817 aa7.91□□□□□ -1.14
PRP40YKL012W BRN1P38170 754 aa7.91□□□□□ -1.14
PRP40YKL012W DOS2P54858 310 aa7.91□□□□□ -1.14
PRP40YKL012W DYS1P38791 387 aa7.9□□□□□ -1.14
PRP40YKL012W YNL165WP53891 406 aa7.9□□□□□ -1.14
PRP40YKL012W RAD55P38953 406 aa7.89□□□□□ -1.15
PRP40YKL012W NTA1P40354 457 aa7.89□□□□□ -1.15
PRP40YKL012W MNR2P35724 969 aa7.89□□□□□ -1.15
PRP40YKL012W TOS4Q06266 489 aa7.89□□□□□ -1.15
PRP40YKL012W HXK1P04806 485 aaKnown RBP7.88□□□□□ -1.15
PRP40YKL012W MLF3P32047 452 aa7.88□□□□□ -1.15
PRP40YKL012W FIR1P40020 876 aa7.88□□□□□ -1.15
PRP40YKL012W QDR2P40474 542 aa7.88□□□□□ -1.15
PRP40YKL012W ALA1P40825 983 aaKnown RBP7.88□□□□□ -1.15
PRP40YKL012W RGD2P43556 714 aa7.88□□□□□ -1.15
PRP40YKL012W RAD2P07276 1031 aa7.87□□□□□ -1.15
PRP40YKL012W MSN1P22148 382 aa7.87□□□□□ -1.15
PRP40YKL012W SPC42P36094 363 aa7.87□□□□□ -1.15
PRP40YKL012W NMD2P38798 1089 aaKnown RBP7.87□□□□□ -1.15
PRP40YKL012W PET112P33893 541 aa7.87□□□□□ -1.15
PRP40YKL012W IRS4P36115 615 aaKnown RBP7.87□□□□□ -1.15
PRP40YKL012W SSN3P39073 555 aa7.86□□□□□ -1.15
PRP40YKL012W SSF2Q12153 453 aaPredicted RBP7.86□□□□□ -1.15
PRP40YKL012W FAA3P39002 694 aa7.85□□□□□ -1.15
PRP40YKL012W PSY2P40164 858 aa7.85□□□□□ -1.15
PRP40YKL012W YAF9P53930 226 aa7.85□□□□□ -1.15
PRP40YKL012W INP54Q08227 384 aaKnown RBP7.85□□□□□ -1.15
PRP40YKL012W WRS1Q12109 432 aaKnown RBP7.85□□□□□ -1.15
PRP40YKL012W TIF6Q12522 245 aaKnown RBP7.85□□□□□ -1.15
PRP40YKL012W YJL049WP47048 450 aa7.84□□□□□ -1.15
PRP40YKL012W MSN5P52918 1224 aa7.84□□□□□ -1.15
PRP40YKL012W JJJ2P46997 583 aa7.84□□□□□ -1.15
PRP40YKL012W RPS31P05759 152 aaKnown RBP7.83□□□□□ -1.16
PRP40YKL012W SRP40P32583 406 aaPredicted RBP7.83□□□□□ -1.16
PRP40YKL012W KAP122P32767 1081 aa7.83□□□□□ -1.16
PRP40YKL012W IOC3P43596 787 aa7.83□□□□□ -1.16
PRP40YKL012W DAL4Q04895 635 aa7.83□□□□□ -1.16
PRP40YKL012W YCS4Q06156 1176 aa7.83□□□□□ -1.16
PRP40YKL012W MET32Q12041 191 aa7.83□□□□□ -1.16
PRP40YKL012W YBR287WP38355 427 aa7.82□□□□□ -1.16
PRP40YKL012W ISW1P38144 1129 aa7.82□□□□□ -1.16
PRP40YKL012W YHL008CP38750 627 aa7.82□□□□□ -1.16
PRP40YKL012W MRPS18P42847 217 aa7.82□□□□□ -1.16
PRP40YKL012W MCD1Q12158 566 aa7.82□□□□□ -1.16
PRP40YKL012W UGA3P26370 528 aa7.81□□□□□ -1.16
PRP40YKL012W SHM1P37292 490 aaPredicted RBP7.81□□□□□ -1.16
PRP40YKL012W GIP1P38229 639 aa7.81□□□□□ -1.16
PRP40YKL012W YTA6P40328 754 aa7.81□□□□□ -1.16
PRP40YKL012W RNH70P53331 553 aa7.81□□□□□ -1.16
PRP40YKL012W CWC24P53769 259 aa7.81□□□□□ -1.16
PRP40YKL012W FLP1P03870 423 aa7.8□□□□□ -1.16
PRP40YKL012W RPC31P17890 251 aa7.8□□□□□ -1.16
PRP40YKL012W AMS1P22855 1083 aa7.8□□□□□ -1.16
PRP40YKL012W PRE9P23638 258 aaKnown RBP7.8□□□□□ -1.16
PRP40YKL012W PRP40P33203 583 aaKnown RBP7.8□□□□□ -1.16
PRP40YKL012W MSB3P48566 633 aaPredicted RBP7.79□□□□□ -1.16
PRP40YKL012W NSE3Q05541 303 aa7.79□□□□□ -1.16
PRP40YKL012W YOR296WQ08748 1289 aa7.79□□□□□ -1.16
PRP40YKL012W ARG82P07250 355 aa7.79□□□□□ -1.16
PRP40YKL012W SIS1P25294 352 aaKnown RBP7.79□□□□□ -1.16
PRP40YKL012W IRE1P32361 1115 aa7.79□□□□□ -1.16
PRP40YKL012W YKL091CP33324 310 aaKnown RBP7.79□□□□□ -1.16
PRP40YKL012W BSD2P38356 321 aa7.79□□□□□ -1.16
PRP40YKL012W AAD14P42884 376 aa7.79□□□□□ -1.16
PRP40YKL012W CLA4P48562 842 aa7.79□□□□□ -1.16
PRP40YKL012W MTO1P53070 669 aa7.79□□□□□ -1.16
PRP40YKL012W KAR2P16474 682 aaKnown RBP7.77□□□□□ -1.17
PRP40YKL012W AHP1P38013 176 aaKnown RBP7.77□□□□□ -1.17
PRP40YKL012W RGA1P39083 1007 aa7.77□□□□□ -1.17
PRP40YKL012W OSW7P43611 510 aa7.77□□□□□ -1.17
PRP40YKL012W STI1P15705 589 aaKnown RBP RIP-Chip data7.76□□□□□ -1.17not detected
PRP40YKL012W CTR9P89105 1077 aa7.76□□□□□ -1.17
PRP40YKL012W YPL109CQ02981 657 aa7.76□□□□□ -1.17
PRP40YKL012W NAB2P32505 525 aaKnown RBP RIP-Chip data7.76□□□□□ -1.17 RIP-Chip
PRP40YKL012W SLA1P32790 1244 aa7.76□□□□□ -1.17
PRP40YKL012W RPN4Q03465 531 aa7.76□□□□□ -1.17
PRP40YKL012W CIT2P08679 460 aa7.75□□□□□ -1.17
PRP40YKL012W CDC34P14682 295 aa7.75□□□□□ -1.17
PRP40YKL012W AIM46P38885 310 aa7.75□□□□□ -1.17
PRP40YKL012W GDE1Q02979 1223 aa7.75□□□□□ -1.17
PRP40YKL012W EMG1Q06287 252 aaKnown RBP7.75□□□□□ -1.17
PRP40YKL012W TY1A-DR3Q12441 440 aa7.75□□□□□ -1.17
PRP40YKL012W AFT1P22149 690 aa7.74□□□□□ -1.17
PRP40YKL012W MCM5P29496 775 aaKnown RBP7.74□□□□□ -1.17
PRP40YKL012W DAL1P32375 460 aa7.74□□□□□ -1.17
PRP40YKL012W PPG1P32838 368 aa7.74□□□□□ -1.17
PRP40YKL012W BCK2P33306 851 aa7.74□□□□□ -1.17
PRP40YKL012W PDC6P26263 563 aaKnown RBP7.74□□□□□ -1.17
PRP40YKL012W UGA4P32837 571 aa7.74□□□□□ -1.17
PRP40YKL012W VTC4P47075 721 aa7.74□□□□□ -1.17
PRP40YKL012W FAR11P53917 953 aa7.74□□□□□ -1.17
PRP40YKL012W ADI1Q03677 179 aa7.74□□□□□ -1.17
Retrieved 100 of 5,963 RNA–protein pairs in 23.6 ms