RNA–Protein interactions for RNA: YJL041W

NSP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NSP1, Length 2,472 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NSP1	YJL041W	NOB1	Q08444	459 aa	Known RBP	4.03	□□□□□ -1.76
NSP1	YJL041W	YOL087C	Q99247	1116 aa		4.03	□□□□□ -1.76
NSP1	YJL041W	PDR10	P51533	1564 aa		4.03	□□□□□ -1.76
NSP1	YJL041W	SAC3	P46674	1301 aa		4.03	□□□□□ -1.76
NSP1	YJL041W	PUP1	P25043	261 aa		4.03	□□□□□ -1.76
NSP1	YJL041W	MSH3	P25336	1018 aa		4.03	□□□□□ -1.76
NSP1	YJL041W	PEP12	P32854	288 aa		4.03	□□□□□ -1.76
NSP1	YJL041W	NDL1	Q06568	189 aa		4.03	□□□□□ -1.76
NSP1	YJL041W	TRK1	P12685	1235 aa		4.02	□□□□□ -1.77
NSP1	YJL041W	CDC10	P25342	322 aa	Known RBP	4.02	□□□□□ -1.77
NSP1	YJL041W	PSO2	P30620	661 aa		4.02	□□□□□ -1.77
NSP1	YJL041W	IAH1	P41734	238 aa		4.02	□□□□□ -1.77
NSP1	YJL041W	RSC8	P43609	557 aa	Known RBP	4.02	□□□□□ -1.77
NSP1	YJL041W	MDM38	Q08179	573 aa		4.02	□□□□□ -1.77
NSP1	YJL041W	PUS1	Q12211	544 aa	Known RBP	4.02	□□□□□ -1.77
NSP1	YJL041W	MYO2	P19524	1574 aa	Known RBP	4.02	□□□□□ -1.77
NSP1	YJL041W	RPC82	P32349	654 aa		4.02	□□□□□ -1.77
NSP1	YJL041W	RPT2	P40327	437 aa	Known RBP	4.02	□□□□□ -1.77
NSP1	YJL041W	FRA1	Q07825	749 aa		4.02	□□□□□ -1.77
NSP1	YJL041W	CFT2	Q12102	859 aa	Predicted RBP	4.02	□□□□□ -1.77
NSP1	YJL041W	GLE1	Q12315	538 aa		4.02	□□□□□ -1.77
NSP1	YJL041W	DNA2	P38859	1522 aa		4.01	□□□□□ -1.77
NSP1	YJL041W	TPM2	P40414	161 aa		4.01	□□□□□ -1.77
NSP1	YJL041W	RTS3	P53289	263 aa		4.01	□□□□□ -1.77
NSP1	YJL041W	ESC2	Q06340	456 aa		4.01	□□□□□ -1.77
NSP1	YJL041W	MSM1	P22438	575 aa		4.01	□□□□□ -1.77
NSP1	YJL041W	TPD3	P31383	635 aa		4.01	□□□□□ -1.77
NSP1	YJL041W	SCT1	P32784	759 aa		4.01	□□□□□ -1.77
NSP1	YJL041W	EMP47	P43555	445 aa		4.01	□□□□□ -1.77
NSP1	YJL041W	TAF2	P23255	1407 aa		4.01	□□□□□ -1.77
NSP1	YJL041W	ARD1	P07347	238 aa	Predicted RBP	4	□□□□□ -1.77
NSP1	YJL041W	GAL2	P13181	574 aa		4	□□□□□ -1.77
NSP1	YJL041W	MSP1	P28737	362 aa		4	□□□□□ -1.77
NSP1	YJL041W	MED8	P38304	223 aa		4	□□□□□ -1.77
NSP1	YJL041W	NOP7	P53261	605 aa	Known RBP	4	□□□□□ -1.77
NSP1	YJL041W	NOP15	P53927	220 aa	Predicted RBP	4	□□□□□ -1.77
NSP1	YJL041W	YRM1	Q12340	786 aa		4	□□□□□ -1.77
NSP1	YJL041W	SIN3	P22579	1536 aa		4	□□□□□ -1.77
NSP1	YJL041W	HAP4	P14064	554 aa		4	□□□□□ -1.77
NSP1	YJL041W	FRK1	Q03002	865 aa	Predicted RBP	4	□□□□□ -1.77
NSP1	YJL041W	ORM2	Q06144	216 aa		4	□□□□□ -1.77
NSP1	YJL041W	ESP1	Q03018	1630 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	RRP14	P36080	434 aa	Known RBP	3.99	□□□□□ -1.77
NSP1	YJL041W	RAD26	P40352	1085 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	FIG4	P42837	879 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	YFL034W	P43564	1073 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	RIA1	P53893	1110 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	MRS2	Q01926	470 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	PUF6	Q04373	656 aa	Known RBP	3.99	□□□□□ -1.77
NSP1	YJL041W	ARR1	Q06596	294 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	SWI1	P09547	1314 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	RAD50	P12753	1312 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	PDC1	P06169	563 aa	Known RBP	3.99	□□□□□ -1.77
NSP1	YJL041W	PHO87	P25360	923 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	DEP1	P31385	405 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	HXT10	P43581	546 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	STU2	P46675	888 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	SYH1	Q02875	849 aa	Known RBP	3.99	□□□□□ -1.77
NSP1	YJL041W	IMH1	Q06704	911 aa	Known RBP	3.99	□□□□□ -1.77
NSP1	YJL041W	RPO31	P04051	1460 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	NUP159	P40477	1460 aa		3.99	□□□□□ -1.77
NSP1	YJL041W	YRF1-4	O13559	1382 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	HEM3	P28789	327 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	YME2	P32843	850 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	EXO84	P38261	753 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	SSF1	P38789	453 aa	Predicted RBP	3.98	□□□□□ -1.77
NSP1	YJL041W	JJJ1	P53863	590 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	ECM23	Q02710	187 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	RCF1	Q03713	159 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	INP2	Q03824	705 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	YDR341C	Q05506	607 aa	Known RBP	3.98	□□□□□ -1.77
NSP1	YJL041W	CDC45	Q08032	650 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	PAN1	P32521	1480 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	GCN2	P15442	1659 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	RAV1	P47104	1357 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	RDS2	P19541	446 aa	Known RBP	3.98	□□□□□ -1.77
NSP1	YJL041W	STM1	P39015	273 aa	Known RBP	3.98	□□□□□ -1.77
NSP1	YJL041W	ECM1	P39715	212 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	KEL2	P50090	882 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	GRX3	Q03835	250 aa		3.98	□□□□□ -1.77
NSP1	YJL041W	NOC3	Q07896	663 aa	Predicted RBP	3.98	□□□□□ -1.77
NSP1	YJL041W	ARO1	P08566	1588 aa	Known RBP	3.97	□□□□□ -1.77
NSP1	YJL041W	SSK2	P53599	1579 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	POL1	P13382	1468 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	RAD16	P31244	790 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	RPC37	P36121	282 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	KTR7	P40504	517 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	CEP3	P40969	608 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	LSC1	P53598	329 aa	Known RBP	3.97	□□□□□ -1.77
NSP1	YJL041W	HED1	Q03937	162 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	YML083C	Q04526	418 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	CFT1	Q06632	1357 aa	Known RBP	3.97	□□□□□ -1.77
NSP1	YJL041W	VAC17	P25591	423 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	SEC20	P28791	383 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	ISF1	P32488	338 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	OSW7	P43611	510 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	GAS4	Q08271	471 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	BMS1	Q08965	1183 aa	Known RBP	3.97	□□□□□ -1.77
NSP1	YJL041W	NFI1	Q12216	726 aa		3.97	□□□□□ -1.77
NSP1	YJL041W	HAT1	Q12341	374 aa		3.97	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 105.2 ms