RNA–Protein interactions for RNA: YHL006C

SHU1, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU1YHL006C UTP7P40055 554 aaKnown RBP16.37■□□□□ 0.21
SHU1YHL006C PNT1P38969 423 aa16.36■□□□□ 0.21
SHU1YHL006C NUG1P40010 520 aaKnown RBP16.36■□□□□ 0.21
SHU1YHL006C WRS1Q12109 432 aaKnown RBP16.36■□□□□ 0.21
SHU1YHL006C MTC3P53077 123 aa16.35■□□□□ 0.21
SHU1YHL006C JJJ2P46997 583 aa16.34■□□□□ 0.21
SHU1YHL006C DAL5P15365 543 aa16.33■□□□□ 0.2
SHU1YHL006C SLA1P32790 1244 aa16.33■□□□□ 0.2
SHU1YHL006C RPT3P33298 428 aaKnown RBP16.32■□□□□ 0.2
SHU1YHL006C YIL092WP40497 633 aa16.32■□□□□ 0.2
SHU1YHL006C NAB6Q03735 1134 aaKnown RBP RIP-Chip data16.32■□□□□ 0.2not detected
SHU1YHL006C ACK1Q07622 623 aaPredicted RBP16.31■□□□□ 0.2
SHU1YHL006C HVG1P0CE11 249 aa16.3■□□□□ 0.2
SHU1YHL006C YJL171CP46992 396 aa16.3■□□□□ 0.2
SHU1YHL006C PSF3Q12146 194 aa16.3■□□□□ 0.2
SHU1YHL006C SEC18P18759 758 aaKnown RBP16.29■□□□□ 0.2
SHU1YHL006C CSR2Q12734 1121 aa16.29■□□□□ 0.2
SHU1YHL006C YFH7P43591 353 aa16.28■□□□□ 0.2
SHU1YHL006C GLO3P38682 493 aaKnown RBP16.27■□□□□ 0.2
SHU1YHL006C GYP5Q12344 894 aa16.27■□□□□ 0.2
SHU1YHL006C TIF6Q12522 245 aaKnown RBP16.27■□□□□ 0.2
SHU1YHL006C GSC2P40989 1895 aa16.27■□□□□ 0.19
SHU1YHL006C BSD2P38356 321 aa16.26■□□□□ 0.19
SHU1YHL006C YRB30P53107 440 aaPredicted RBP16.26■□□□□ 0.19
SHU1YHL006C RRT6P53117 311 aaPredicted RBP16.26■□□□□ 0.19
SHU1YHL006C AI2P03876 854 aa16.25■□□□□ 0.19
SHU1YHL006C PCS60P38137 543 aaKnown RBP RIP-Chip data16.25■□□□□ 0.19not detected
SHU1YHL006C YIR042CP40586 236 aa16.24■□□□□ 0.19
SHU1YHL006C PUS6P53294 404 aa16.24■□□□□ 0.19
SHU1YHL006C YNG2P38806 282 aaKnown RBP16.23■□□□□ 0.19
SHU1YHL006C NIT1P40447 199 aa16.23■□□□□ 0.19
SHU1YHL006C HAL5P38970 855 aaKnown RBP16.22■□□□□ 0.19
SHU1YHL006C SRF1Q12516 437 aa16.22■□□□□ 0.19
SHU1YHL006C SPO1P53541 631 aa16.21■□□□□ 0.19
SHU1YHL006C YNL193WP53870 558 aa16.21■□□□□ 0.19
SHU1YHL006C INM2Q05533 292 aa16.21■□□□□ 0.19
SHU1YHL006C ILV3P39522 585 aaKnown RBP16.2■□□□□ 0.18
SHU1YHL006C CST9Q06032 482 aa16.2■□□□□ 0.18
SHU1YHL006C SNF3P10870 884 aa16.19■□□□□ 0.18
SHU1YHL006C GCD7P32502 381 aaPredicted RBP16.19■□□□□ 0.18
SHU1YHL006C PTK1P36002 662 aaPredicted RBP16.19■□□□□ 0.18
SHU1YHL006C SSF1P38789 453 aaPredicted RBP16.19■□□□□ 0.18
SHU1YHL006C RPN7Q06103 429 aaKnown RBP16.19■□□□□ 0.18
SHU1YHL006C RRI2Q12348 645 aa16.19■□□□□ 0.18
SHU1YHL006C GAL2P13181 574 aa16.17■□□□□ 0.18
SHU1YHL006C RAD2P07276 1031 aa16.16■□□□□ 0.18
SHU1YHL006C APL6P46682 809 aa16.16■□□□□ 0.18
SHU1YHL006C MOT2P34909 587 aaKnown RBP16.15■□□□□ 0.18
SHU1YHL006C KEL1P38853 1164 aaKnown RBP16.15■□□□□ 0.18
SHU1YHL006C HGH1P48362 394 aaKnown RBP16.15■□□□□ 0.18
SHU1YHL006C APE3P37302 537 aaKnown RBP16.14■□□□□ 0.17
SHU1YHL006C PRS1P32895 427 aaKnown RBP16.13■□□□□ 0.17
SHU1YHL006C MDL2P33311 773 aa16.13■□□□□ 0.17
SHU1YHL006C NSG2P53898 299 aa16.13■□□□□ 0.17
SHU1YHL006C PIF1P07271 859 aa16.12■□□□□ 0.17
SHU1YHL006C PFK2P16862 959 aaKnown RBP RIP-Chip data16.12■□□□□ 0.17not detected
SHU1YHL006C AAD16Q02895 342 aa16.12■□□□□ 0.17
SHU1YHL006C RBA50Q04418 439 aa16.12■□□□□ 0.17
SHU1YHL006C FLO1P32768 1537 aa16.12■□□□□ 0.17
SHU1YHL006C RAD53P22216 821 aa16.11■□□□□ 0.17
SHU1YHL006C PEX29Q03370 554 aa16.11■□□□□ 0.17
SHU1YHL006C KTR3P38130 404 aaPredicted RBP16.1■□□□□ 0.17
SHU1YHL006C RSC30P38781 883 aa16.1■□□□□ 0.17
SHU1YHL006C FUN12P39730 1002 aaKnown RBP16.1■□□□□ 0.17
SHU1YHL006C NCS6P53088 359 aa16.1■□□□□ 0.17
SHU1YHL006C ADP1P25371 1049 aa16.08■□□□□ 0.16
SHU1YHL006C PPM2Q08282 695 aa16.08■□□□□ 0.16
SHU1YHL006C GIN4Q12263 1142 aa16.08■□□□□ 0.16
SHU1YHL006C PMA1P05030 918 aaKnown RBP16.07■□□□□ 0.16
SHU1YHL006C SDH2P21801 266 aa16.07■□□□□ 0.16
SHU1YHL006C TPS3P38426 1054 aaKnown RBP16.07■□□□□ 0.16
SHU1YHL006C PUF6Q04373 656 aaKnown RBP16.07■□□□□ 0.16
SHU1YHL006C NCB2Q92317 146 aa16.07■□□□□ 0.16
SHU1YHL006C GRX7P38068 203 aa16.06■□□□□ 0.16
SHU1YHL006C TFA1P36100 482 aa16.05■□□□□ 0.16
SHU1YHL006C JIP4Q03361 876 aa16.05■□□□□ 0.16
SHU1YHL006C ASH1P34233 588 aa16.04■□□□□ 0.16
SHU1YHL006C BOI1P38041 980 aaKnown RBP16.04■□□□□ 0.16
SHU1YHL006C POL32P47110 350 aa16.04■□□□□ 0.16
SHU1YHL006C YGL242CP53066 181 aa16.04■□□□□ 0.16
SHU1YHL006C CYB2P00175 591 aa16.02■□□□□ 0.16
SHU1YHL006C YBL028CP38202 106 aa16.01■□□□□ 0.15
SHU1YHL006C PIP2P52960 996 aa16.01■□□□□ 0.15
SHU1YHL006C PCL8Q08966 492 aa16.01■□□□□ 0.15
SHU1YHL006C NOP2P40991 618 aaKnown RBP16■□□□□ 0.15
SHU1YHL006C TUB2P02557 457 aaKnown RBP15.99■□□□□ 0.15
SHU1YHL006C ALO1P54783 526 aaKnown RBP15.99■□□□□ 0.15
SHU1YHL006C NOT3P06102 836 aaKnown RBP15.98■□□□□ 0.15
SHU1YHL006C SPT21P35209 758 aa15.97■□□□□ 0.15
SHU1YHL006C NMD2P38798 1089 aaKnown RBP15.97■□□□□ 0.15
SHU1YHL006C ACA1P39970 489 aa15.97■□□□□ 0.15
SHU1YHL006C KIN1P13185 1064 aa15.96■□□□□ 0.15
SHU1YHL006C BDP1P46678 594 aa15.96■□□□□ 0.15
SHU1YHL006C MLC1P53141 149 aa15.96■□□□□ 0.15
SHU1YHL006C SGD1Q06132 899 aa15.96■□□□□ 0.15
SHU1YHL006C EPS1P40557 701 aa15.95■□□□□ 0.14
SHU1YHL006C SPR3P41901 512 aa15.95■□□□□ 0.14
SHU1YHL006C PIB1Q06651 286 aa15.95■□□□□ 0.14
SHU1YHL006C MSH4P40965 878 aaPredicted RBP15.94■□□□□ 0.14
SHU1YHL006C YLR225CQ05948 407 aaKnown RBP15.94■□□□□ 0.14
Retrieved 100 of 5,963 RNA–protein pairs in 39 ms