RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 RPAINQ86UA6 219 aa6.95□□□□□ -1.3
SCN1A-216ENST00000637968 FEZ2Q9UHY8 353 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-216ENST00000637968 FAM177BA6PVY3 158 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 RNF214Q8ND24 703 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 ARGLU1Q9NWB6 273 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-216ENST00000637968 TTC36A6NLP5 189 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 MAP2K2P36507 400 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 TERF2Q15554 542 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 KLHL40Q2TBA0 621 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 DRC7Q8IY82 874 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 MTUS2Q5JR59 1369 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 EP400NLQ6ZTU2 488 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 TNPO1Q92973 898 aaKnown RBP6.94□□□□□ -1.3
SCN1A-216ENST00000637968 FOXD4L1Q9NU39 408 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 RAI14Q9P0K7 980 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 FHAD1B1AJZ9 1412 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 DHX16O60231 1041 aaKnown RBP6.94□□□□□ -1.3
SCN1A-216ENST00000637968 CHGAP10645 457 aaKnown RBP6.94□□□□□ -1.3
SCN1A-216ENST00000637968 RDXP35241 583 aaKnown RBP6.94□□□□□ -1.3
SCN1A-216ENST00000637968 BRPF1P55201 1214 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-216ENST00000637968 NBPF6Q5VWK0 638 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 MCTP1Q6DN14 999 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 NBPF5PQ86XG9 351 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-216ENST00000637968 GAS2L3Q86XJ1 694 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 OSCARQ8IYS5 282 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 NBPF4Q96M43 638 aa6.94□□□□□ -1.3
SCN1A-216ENST00000637968 PEG3Q9GZU2 1588 aa6.93□□□□□ -1.3
SCN1A-216ENST00000637968 RABEP1Q15276 862 aa6.93□□□□□ -1.3
SCN1A-216ENST00000637968 MPNDQ8N594 471 aa6.93□□□□□ -1.3
SCN1A-216ENST00000637968 JRKLQ9Y4A0 524 aa6.93□□□□□ -1.3
SCN1A-216ENST00000637968 KIF16BQ96L93 1317 aa6.93□□□□□ -1.3
SCN1A-216ENST00000637968 ATAD2BQ9ULI0 1458 aa6.93□□□□□ -1.3
SCN1A-216ENST00000637968 CCDC191Q8NCU4 936 aa6.93□□□□□ -1.3
SCN1A-216ENST00000637968 PMFBP1Q8TBY8 1022 aa6.93□□□□□ -1.3
SCN1A-216ENST00000637968 GUCY2CP25092 1073 aa6.92□□□□□ -1.3
SCN1A-216ENST00000637968 BIRC2Q13490 618 aa6.92□□□□□ -1.3
SCN1A-216ENST00000637968 BMS1Q14692 1282 aaKnown RBP6.92□□□□□ -1.3
SCN1A-216ENST00000637968 PPP2R5AQ15172 486 aa6.92□□□□□ -1.3
SCN1A-216ENST00000637968 NBPF9Q3BBW0 867 aa6.92□□□□□ -1.3
SCN1A-216ENST00000637968 NUCB2P80303 420 aa6.92□□□□□ -1.3
SCN1A-216ENST00000637968 RNF20Q5VTR2 975 aa6.92□□□□□ -1.3
SCN1A-216ENST00000637968 TSPY26PQ9H489 355 aa6.92□□□□□ -1.3
SCN1A-216ENST00000637968 ANTXR1Q9H6X2 564 aa6.92□□□□□ -1.3
SCN1A-216ENST00000637968 NBPF11Q86T75 865 aa6.92□□□□□ -1.3
SCN1A-216ENST00000637968 DNAAF4Q8WXU2 420 aa6.92□□□□□ -1.3
SCN1A-216ENST00000637968 DONSONQ9NYP3 566 aa6.92□□□□□ -1.3
SCN1A-216ENST00000637968 SOGA1O94964 1423 aa6.92□□□□□ -1.3
SCN1A-216ENST00000637968 RAD51AP2Q09MP3 1159 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 PIBF1Q8WXW3 757 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 SUFUQ9UMX1 484 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 TPM1P09493 284 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 HNRNPH2P55795 449 aaKnown RBP6.91□□□□□ -1.3
SCN1A-216ENST00000637968 SEMA3FQ13275 785 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 ZNF397Q8NF99 534 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-216ENST00000637968 TBC1D32Q96NH3 1257 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.91□□□□□ -1.3
SCN1A-216ENST00000637968 CARMIL2Q6F5E8 1435 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 CXorf56Q9H5V9 222 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 SUDS3Q9H7L9 328 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-216ENST00000637968 IFT57Q9NWB7 429 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 CCDC7Q96M83 1385 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 MBD3O95983 291 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 MNAT1P51948 309 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 KRBA2Q6ZNG9 492 aa6.91□□□□□ -1.3
SCN1A-216ENST00000637968 CALR3Q96L12 384 aaKnown RBP6.91□□□□□ -1.3
SCN1A-216ENST00000637968 RIOK3O14730 519 aaKnown RBP6.9□□□□□ -1.3
SCN1A-216ENST00000637968 PRR29P0C7W0 189 aa6.9□□□□□ -1.3
SCN1A-216ENST00000637968 SLFN14P0C7P3 912 aa6.9□□□□□ -1.31
SCN1A-216ENST00000637968 IVLP07476 585 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 ZSCAN23Q3MJ62 389 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 RWDD1Q9H446 243 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-216ENST00000637968 CPSF2Q9P2I0 782 aaKnown RBP6.89□□□□□ -1.31
SCN1A-216ENST00000637968 LRRFIP2Q9Y608 721 aaKnown RBP6.89□□□□□ -1.31
SCN1A-216ENST00000637968 CUX2O14529 1486 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 ABCC8Q09428 1581 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 MROH2BQ7Z745 1585 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 TULP2O00295 520 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 NRDCO43847 1150 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 CAPN2P17655 700 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 ZNF445P59923 1031 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 FAM184AQ8NB25 1140 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 CARMIL1Q5VZK9 1371 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 KIF3CO14782 793 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 SETSIPP0DME0 302 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 CCDC196A0A1B0GTZ2 297 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 MLECQ14165 292 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 TTLL5Q6EMB2 1281 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 ZNF710Q8N1W2 664 aa6.89□□□□□ -1.31
SCN1A-216ENST00000637968 ZNF513Q8N8E2 541 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-216ENST00000637968 CGNL1Q0VF96 1302 aa6.88□□□□□ -1.31
SCN1A-216ENST00000637968 PPP1R12AO14974 1030 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-216ENST00000637968 U2SURPO15042 1029 aaKnown RBP6.88□□□□□ -1.31
SCN1A-216ENST00000637968 CCP110O43303 1012 aa6.88□□□□□ -1.31
SCN1A-216ENST00000637968 REC8O95072 547 aa6.88□□□□□ -1.31
SCN1A-216ENST00000637968 AP1ARQ63HQ0 302 aa6.88□□□□□ -1.31
SCN1A-216ENST00000637968 PPM1EQ8WY54 764 aa6.88□□□□□ -1.31
SCN1A-216ENST00000637968 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.88□□□□□ -1.318e-7■■■□□ 15.2
SCN1A-216ENST00000637968 NUCKS1Q9H1E3 243 aaKnown RBP6.88□□□□□ -1.31
SCN1A-216ENST00000637968 DDX41Q9UJV9 622 aaKnown RBP6.88□□□□□ -1.31
SCN1A-216ENST00000637968 POLR3GO15318 223 aaPredicted RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms