RNA–Protein interactions for RNA: ENST00000636876.1

CLN6-216, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 655 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-216ENST00000636876 ZEB1P37275 1124 aaPredicted RBP22.67■■□□□ 1.22
CLN6-216ENST00000636876 ADGRL3Q9HAR2 1447 aa22.65■■□□□ 1.22
CLN6-216ENST00000636876 EIF3AQ14152 1382 aaKnown RBP22.65■■□□□ 1.22
CLN6-216ENST00000636876 C14orf37Q86TY3 774 aa22.65■■□□□ 1.22
CLN6-216ENST00000636876 SAFB2Q14151 953 aaKnown RBP eCLIP22.64■■□□□ 1.21
CLN6-216ENST00000636876 CENPJQ9HC77 1338 aaPredicted RBP22.63■■□□□ 1.21
CLN6-216ENST00000636876 NALCNQ8IZF0 1738 aa22.63■■□□□ 1.21
CLN6-216ENST00000636876 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.63■■□□□ 1.21
CLN6-216ENST00000636876 MED1Q15648 1581 aaPredicted RBP22.63■■□□□ 1.21
CLN6-216ENST00000636876 MSH6P52701 1360 aa22.62■■□□□ 1.21
CLN6-216ENST00000636876 USP47Q96K76 1375 aa22.62■■□□□ 1.21
CLN6-216ENST00000636876 SCAF1Q9H7N4 1312 aaKnown RBP22.61■■□□□ 1.21
CLN6-216ENST00000636876 C19orf44Q9H6X5 657 aa22.61■■□□□ 1.21
CLN6-216ENST00000636876 HSPA1LP34931 641 aa22.59■■□□□ 1.21
CLN6-216ENST00000636876 PIP4K2BP78356 416 aa22.59■■□□□ 1.21
CLN6-216ENST00000636876 QRICH2Q9H0J4 1663 aa22.58■■□□□ 1.21
CLN6-216ENST00000636876 MINK1Q8N4C8 1332 aaPredicted RBP22.58■■□□□ 1.21
CLN6-216ENST00000636876 DCCP43146 1447 aa22.58■■□□□ 1.21
CLN6-216ENST00000636876 ADGRB2O60241 1585 aa22.57■■□□□ 1.2
CLN6-216ENST00000636876 CDC42BPGQ6DT37 1551 aa22.57■■□□□ 1.2
CLN6-216ENST00000636876 ST20-MTHFSA0A0A6YYL1 179 aa22.55■■□□□ 1.2
CLN6-216ENST00000636876 TOM1O60784 492 aa22.55■■□□□ 1.2
CLN6-216ENST00000636876 ATF3P18847 181 aa22.55■■□□□ 1.2
CLN6-216ENST00000636876 HIRIP3Q9BW71 556 aaPredicted RBP22.55■■□□□ 1.2
CLN6-216ENST00000636876 SBNO2Q9Y2G9 1366 aa22.54■■□□□ 1.2
CLN6-216ENST00000636876 EIF4G2P78344 907 aaKnown RBP eCLIP22.54■■□□□ 1.2
CLN6-216ENST00000636876 CADPS2Q86UW7 1296 aa22.54■■□□□ 1.2
CLN6-216ENST00000636876 HSPA5P11021 654 aaKnown RBP22.51■■□□□ 1.19
CLN6-216ENST00000636876 TESK2Q96S53 571 aa22.51■■□□□ 1.19
CLN6-216ENST00000636876 WASLO00401 505 aaPredicted RBP22.5■■□□□ 1.19
CLN6-216ENST00000636876 FMN2Q9NZ56 1722 aa22.5■■□□□ 1.19
CLN6-216ENST00000636876 TULP4Q9NRJ4 1543 aa22.49■■□□□ 1.19
CLN6-216ENST00000636876 MST1RQ04912 1400 aa22.48■■□□□ 1.19
CLN6-216ENST00000636876 SLAIN2Q9P270 581 aa22.47■■□□□ 1.19
CLN6-216ENST00000636876 EVC2Q86UK5 1308 aa22.47■■□□□ 1.19
CLN6-216ENST00000636876 SLC24A1O60721 1099 aa22.46■■□□□ 1.19
CLN6-216ENST00000636876 CDK19Q9BWU1 502 aa22.46■■□□□ 1.19
CLN6-216ENST00000636876 C1orf167Q5SNV9 1468 aa22.45■■□□□ 1.18
CLN6-216ENST00000636876 NUTM2FA1L443 756 aa22.44■■□□□ 1.18
CLN6-216ENST00000636876 ANKARQ7Z5J8 1434 aa22.44■■□□□ 1.18
CLN6-216ENST00000636876 USP32Q8NFA0 1604 aa22.42■■□□□ 1.18
CLN6-216ENST00000636876 PRR36Q9H6K5 1346 aa22.41■■□□□ 1.18
CLN6-216ENST00000636876 SRPK2P78362 688 aaKnown RBP22.41■■□□□ 1.18
CLN6-216ENST00000636876 TMF1P82094 1093 aa22.41■■□□□ 1.18
CLN6-216ENST00000636876 ATP7BP35670 1465 aa22.41■■□□□ 1.18
CLN6-216ENST00000636876 CABP2Q9NPB3 220 aa22.4■■□□□ 1.18
CLN6-216ENST00000636876 NUDT16Q96DE0 195 aaKnown RBP22.39■■□□□ 1.17
CLN6-216ENST00000636876 RGPD8O14715 1765 aaPredicted RBP22.38■■□□□ 1.17
CLN6-216ENST00000636876 BRINP3Q76B58 766 aa22.37■■□□□ 1.17
CLN6-216ENST00000636876 PUS7Q96PZ0 661 aaKnown RBP22.37■■□□□ 1.17
CLN6-216ENST00000636876 ORAI2Q96SN7 254 aa22.37■■□□□ 1.17
CLN6-216ENST00000636876 ROBO1Q9Y6N7 1651 aa22.36■■□□□ 1.17
CLN6-216ENST00000636876 ESCO1Q5FWF5 840 aa22.36■■□□□ 1.17
CLN6-216ENST00000636876 ATAD2Q6PL18 1390 aa22.36■■□□□ 1.17
CLN6-216ENST00000636876 CCDC61Q9Y6R9 512 aa22.35■■□□□ 1.17
CLN6-216ENST00000636876 TOPAZ1Q8N9V7 1692 aa22.35■■□□□ 1.17
CLN6-216ENST00000636876 ITSN1Q15811 1721 aa22.34■■□□□ 1.17
CLN6-216ENST00000636876 CDCA8Q53HL2 280 aa22.34■■□□□ 1.17
CLN6-216ENST00000636876 PHF8Q9UPP1 1060 aa22.33■■□□□ 1.17
CLN6-216ENST00000636876 KIF1AQ12756 1690 aa22.32■■□□□ 1.16
CLN6-216ENST00000636876 PPIP5K1Q6PFW1 1433 aa22.31■■□□□ 1.16
CLN6-216ENST00000636876 PLEKHG3A1L390 1219 aa22.3■■□□□ 1.16
CLN6-216ENST00000636876 C11orf95C9JLR9 678 aaPredicted RBP22.29■■□□□ 1.16
CLN6-216ENST00000636876 PMFBP1Q8TBY8 1022 aa22.29■■□□□ 1.16
CLN6-216ENST00000636876 PHF23Q9BUL5 403 aaPredicted RBP22.28■■□□□ 1.16
CLN6-216ENST00000636876 CABP1Q9NZU7 370 aa22.28■■□□□ 1.16
CLN6-216ENST00000636876 NHSL1Q5SYE7 1610 aa22.27■■□□□ 1.16
CLN6-216ENST00000636876 AHDC1Q5TGY3 1603 aaPredicted RBP22.27■■□□□ 1.16
CLN6-216ENST00000636876 FOXO3O43524 673 aa22.26■■□□□ 1.15
CLN6-216ENST00000636876 NPHP3Q7Z494 1330 aa22.26■■□□□ 1.15
CLN6-216ENST00000636876 POLR3AO14802 1390 aaPredicted RBP22.25■■□□□ 1.15
CLN6-216ENST00000636876 NINLQ9Y2I6 1382 aa22.25■■□□□ 1.15
CLN6-216ENST00000636876 NGDNQ8NEJ9 315 aaKnown RBP22.25■■□□□ 1.15
CLN6-216ENST00000636876 DDX17Q92841 729 aaKnown RBP22.25■■□□□ 1.15
CLN6-216ENST00000636876 ACEP12821 1306 aa22.25■■□□□ 1.15
CLN6-216ENST00000636876 KIF7Q2M1P5 1343 aa22.25■■□□□ 1.15
CLN6-216ENST00000636876 TMC1Q8TDI8 760 aa22.24■■□□□ 1.15
CLN6-216ENST00000636876 POLR3GLQ9BT43 218 aa22.24■■□□□ 1.15
CLN6-216ENST00000636876 SLC12A5Q9H2X9 1139 aa22.23■■□□□ 1.15
CLN6-216ENST00000636876 PHLPP1O60346 1717 aa22.22■■□□□ 1.15
CLN6-216ENST00000636876 CCDC7Q96M83 1385 aa22.22■■□□□ 1.15
CLN6-216ENST00000636876 MYOM1P52179 1685 aa22.21■■□□□ 1.15
CLN6-216ENST00000636876 PXDNQ92626 1479 aa22.21■■□□□ 1.15
CLN6-216ENST00000636876 PSME1Q06323 249 aa22.2■■□□□ 1.14
CLN6-216ENST00000636876 KRT28Q7Z3Y7 464 aa22.2■■□□□ 1.14
CLN6-216ENST00000636876 SOS2Q07890 1332 aaPredicted RBP22.2■■□□□ 1.14
CLN6-216ENST00000636876 WASHC2AQ641Q2 1341 aa22.2■■□□□ 1.14
CLN6-216ENST00000636876 CPSF1Q10570 1443 aaKnown RBP22.2■■□□□ 1.14
CLN6-216ENST00000636876 CD163L1Q9NR16 1453 aa22.2■■□□□ 1.14
CLN6-216ENST00000636876 XPCQ01831 940 aaPredicted RBP22.19■■□□□ 1.14
CLN6-216ENST00000636876 AKAP12Q02952 1782 aa22.18■■□□□ 1.14
CLN6-216ENST00000636876 COL16A1Q07092 1604 aaPredicted RBP22.18■■□□□ 1.14
CLN6-216ENST00000636876 TERF2IPQ9NYB0 399 aa22.18■■□□□ 1.14
CLN6-216ENST00000636876 HDGFL2Q7Z4V5 671 aaPredicted RBP22.17■■□□□ 1.14
CLN6-216ENST00000636876 ZNF692Q9BU19 519 aaPredicted RBP22.17■■□□□ 1.14
CLN6-216ENST00000636876 USP6P35125 1406 aa22.16■■□□□ 1.14
CLN6-216ENST00000636876 A0A1W2PP64 1363 aa22.16■■□□□ 1.14
CLN6-216ENST00000636876 ANKRD36BQ8N2N9 1353 aa22.16■■□□□ 1.14
CLN6-216ENST00000636876 SBNO1A3KN83 1393 aa22.15■■□□□ 1.14
CLN6-216ENST00000636876 KTN1Q86UP2 1357 aaKnown RBP22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms