RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 MYOM1P52179 1685 aa27.63■■■□□ 2.01
CLN3-250ENST00000636839 SLC12A5Q9H2X9 1139 aa27.63■■■□□ 2.01
CLN3-250ENST00000636839 SRPK2P78362 688 aaKnown RBP27.62■■■□□ 2.01
CLN3-250ENST00000636839 TMC1Q8TDI8 760 aa27.62■■■□□ 2.01
CLN3-250ENST00000636839 CDK19Q9BWU1 502 aa27.61■■■□□ 2.01
CLN3-250ENST00000636839 SIRT1Q96EB6 747 aa27.6■■■□□ 2.01
CLN3-250ENST00000636839 CPS1P31327 1500 aa27.59■■■□□ 2.01
CLN3-250ENST00000636839 FAM135BQ49AJ0 1406 aa27.59■■■□□ 2.01
CLN3-250ENST00000636839 KNDC1Q76NI1 1749 aa27.59■■■□□ 2.01
CLN3-250ENST00000636839 NPHP4O75161 1426 aaPredicted RBP27.59■■■□□ 2.01
CLN3-250ENST00000636839 KCNA6P17658 529 aa27.58■■■□□ 2.01
CLN3-250ENST00000636839 DIP2AQ14689 1571 aa27.57■■■□□ 2
CLN3-250ENST00000636839 CCDC184Q52MB2 194 aa27.57■■■□□ 2
CLN3-250ENST00000636839 YTHDC1Q96MU7 727 aaKnown RBP27.57■■■□□ 2
CLN3-250ENST00000636839 CARD14Q9BXL6 1004 aa27.57■■■□□ 2
CLN3-250ENST00000636839 CC2D1BQ5T0F9 858 aaKnown RBP27.54■■■□□ 2
CLN3-250ENST00000636839 CCER2I3L3R5 266 aa27.53■■■□□ 2
CLN3-250ENST00000636839 PUS7Q96PZ0 661 aaKnown RBP27.53■■■□□ 2
CLN3-250ENST00000636839 WASLO00401 505 aaPredicted RBP27.51■■■□□ 2
CLN3-250ENST00000636839 RBM33Q96EV2 1170 aaKnown RBP27.51■■□□□ 1.99
CLN3-250ENST00000636839 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.5■■□□□ 1.99
CLN3-250ENST00000636839 KNSTRNQ9Y448 316 aa27.5■■□□□ 1.99
CLN3-250ENST00000636839 LMTK3Q96Q04 1460 aa27.5■■□□□ 1.99
CLN3-250ENST00000636839 PIK3R4Q99570 1358 aa27.49■■□□□ 1.99
CLN3-250ENST00000636839 XRN1Q8IZH2 1706 aaKnown RBP27.49■■□□□ 1.99
CLN3-250ENST00000636839 AMER1Q5JTC6 1135 aaPredicted RBP27.48■■□□□ 1.99
CLN3-250ENST00000636839 PTCH1Q13635 1447 aa27.47■■□□□ 1.99
CLN3-250ENST00000636839 CABP1Q9NZU7 370 aa27.46■■□□□ 1.99
CLN3-250ENST00000636839 NUTM2FA1L443 756 aa27.45■■□□□ 1.99
CLN3-250ENST00000636839 ATAD2Q6PL18 1390 aa27.45■■□□□ 1.98
CLN3-250ENST00000636839 KTN1Q86UP2 1357 aaKnown RBP27.44■■□□□ 1.98
CLN3-250ENST00000636839 CHD2O14647 1828 aaKnown RBP27.44■■□□□ 1.98
CLN3-250ENST00000636839 PRR36Q9H6K5 1346 aa27.42■■□□□ 1.98
CLN3-250ENST00000636839 NUDT16Q96DE0 195 aaKnown RBP27.41■■□□□ 1.98
CLN3-250ENST00000636839 PARD3Q8TEW0 1356 aa27.41■■□□□ 1.98
CLN3-250ENST00000636839 NSD3Q9BZ95 1437 aa27.41■■□□□ 1.98
CLN3-250ENST00000636839 RALBP1Q15311 655 aa27.4■■□□□ 1.98
CLN3-250ENST00000636839 A0A1W2PP64 1363 aa27.39■■□□□ 1.98
CLN3-250ENST00000636839 ANKRD36BQ8N2N9 1353 aa27.39■■□□□ 1.98
CLN3-250ENST00000636839 CD163L1Q9NR16 1453 aa27.39■■□□□ 1.97
CLN3-250ENST00000636839 MRS2Q9HD23 443 aa27.38■■□□□ 1.97
CLN3-250ENST00000636839 ADGRB2O60241 1585 aa27.36■■□□□ 1.97
CLN3-250ENST00000636839 MYBBP1AQ9BQG0 1328 aaKnown RBP27.35■■□□□ 1.97
CLN3-250ENST00000636839 NINLQ9Y2I6 1382 aa27.35■■□□□ 1.97
CLN3-250ENST00000636839 PPIP5K1Q6PFW1 1433 aa27.35■■□□□ 1.97
CLN3-250ENST00000636839 CCDC61Q9Y6R9 512 aa27.34■■□□□ 1.97
CLN3-250ENST00000636839 ATP7BP35670 1465 aa27.33■■□□□ 1.97
CLN3-250ENST00000636839 STRCQ7RTU9 1775 aa27.33■■□□□ 1.97
CLN3-250ENST00000636839 TERF2IPQ9NYB0 399 aa27.33■■□□□ 1.96
CLN3-250ENST00000636839 NPC1L1Q9UHC9 1359 aa27.29■■□□□ 1.96
CLN3-250ENST00000636839 HDGFL2Q7Z4V5 671 aaPredicted RBP27.29■■□□□ 1.96
CLN3-250ENST00000636839 PROSER2Q86WR7 435 aaPredicted RBP27.28■■□□□ 1.96
CLN3-250ENST00000636839 FAM9BQ8IZU0 186 aa27.28■■□□□ 1.96
CLN3-250ENST00000636839 CGNL1Q0VF96 1302 aa27.26■■□□□ 1.96
CLN3-250ENST00000636839 NWD1Q149M9 1564 aa27.26■■□□□ 1.96
CLN3-250ENST00000636839 PPP2R1AP30153 589 aa27.26■■□□□ 1.95
CLN3-250ENST00000636839 USP32Q8NFA0 1604 aa27.25■■□□□ 1.95
CLN3-250ENST00000636839 NALCNQ8IZF0 1738 aa27.25■■□□□ 1.95
CLN3-250ENST00000636839 TNNT2P45379 298 aaPredicted RBP27.25■■□□□ 1.95
CLN3-250ENST00000636839 C14orf37Q86TY3 774 aa27.25■■□□□ 1.95
CLN3-250ENST00000636839 NLRP13Q86W25 1043 aa27.25■■□□□ 1.95
CLN3-250ENST00000636839 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.24■■□□□ 1.95
CLN3-250ENST00000636839 CPSF1Q10570 1443 aaKnown RBP27.24■■□□□ 1.95
CLN3-250ENST00000636839 STRCP1A6NGW2 1772 aa27.24■■□□□ 1.95
CLN3-250ENST00000636839 PMFBP1Q8TBY8 1022 aa27.24■■□□□ 1.95
CLN3-250ENST00000636839 GGNBP2Q9H3C7 697 aa27.23■■□□□ 1.95
CLN3-250ENST00000636839 FYB1O15117 783 aa27.23■■□□□ 1.95
CLN3-250ENST00000636839 MORC1Q86VD1 984 aa27.22■■□□□ 1.95
CLN3-250ENST00000636839 NKTRP30414 1462 aaKnown RBP27.21■■□□□ 1.95
CLN3-250ENST00000636839 BRD4O60885 1362 aaPredicted RBP27.21■■□□□ 1.95
CLN3-250ENST00000636839 ACEP12821 1306 aa27.21■■□□□ 1.95
CLN3-250ENST00000636839 RGPD8O14715 1765 aaPredicted RBP27.21■■□□□ 1.95
CLN3-250ENST00000636839 ADGRL3Q9HAR2 1447 aa27.2■■□□□ 1.95
CLN3-250ENST00000636839 PLEKHG3A1L390 1219 aa27.2■■□□□ 1.94
CLN3-250ENST00000636839 PNISRQ8TF01 805 aaKnown RBP27.19■■□□□ 1.94
CLN3-250ENST00000636839 CDC42BPGQ6DT37 1551 aa27.19■■□□□ 1.94
CLN3-250ENST00000636839 TOPAZ1Q8N9V7 1692 aa27.18■■□□□ 1.94
CLN3-250ENST00000636839 ZNF335Q9H4Z2 1342 aaPredicted RBP27.17■■□□□ 1.94
CLN3-250ENST00000636839 TMEM94Q12767 1356 aa27.17■■□□□ 1.94
CLN3-250ENST00000636839 ZRANB1Q9UGI0 708 aa27.16■■□□□ 1.94
CLN3-250ENST00000636839 FMN2Q9NZ56 1722 aa27.15■■□□□ 1.94
CLN3-250ENST00000636839 NME9Q86XW9 330 aa27.14■■□□□ 1.94
CLN3-250ENST00000636839 ZNF692Q9BU19 519 aaPredicted RBP27.13■■□□□ 1.93
CLN3-250ENST00000636839 EDC4Q6P2E9 1401 aaKnown RBP27.12■■□□□ 1.93
CLN3-250ENST00000636839 ANKARQ7Z5J8 1434 aa27.12■■□□□ 1.93
CLN3-250ENST00000636839 NGDNQ8NEJ9 315 aaKnown RBP27.12■■□□□ 1.93
CLN3-250ENST00000636839 NSD2O96028 1365 aa27.11■■□□□ 1.93
CLN3-250ENST00000636839 SENP3-EIF4A1A0A087X0R7 540 aa27.11■■□□□ 1.93
CLN3-250ENST00000636839 AKAP12Q02952 1782 aa27.11■■□□□ 1.93
CLN3-250ENST00000636839 FBLN1P23142 703 aa27.11■■□□□ 1.93
CLN3-250ENST00000636839 C19orf44Q9H6X5 657 aa27.11■■□□□ 1.93
CLN3-250ENST00000636839 ITSN1Q15811 1721 aa27.09■■□□□ 1.93
CLN3-250ENST00000636839 MON2Q7Z3U7 1717 aa27.09■■□□□ 1.93
CLN3-250ENST00000636839 ESCO1Q5FWF5 840 aa27.08■■□□□ 1.93
CLN3-250ENST00000636839 ORAI2Q96SN7 254 aa27.08■■□□□ 1.93
CLN3-250ENST00000636839 TTC21BQ7Z4L5 1316 aa27.08■■□□□ 1.93
CLN3-250ENST00000636839 USP6P35125 1406 aa27.07■■□□□ 1.92
CLN3-250ENST00000636839 HNRNPUQ00839 825 aaKnown RBP eCLIP27.07■■□□□ 1.92
CLN3-250ENST00000636839 POLR3AO14802 1390 aaPredicted RBP27.07■■□□□ 1.92
CLN3-250ENST00000636839 PHF8Q9UPP1 1060 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms