RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 NHSL1Q5SYE7 1610 aa21.2■□□□□ 0.98
PNKP-221ENST00000627317 CFAP70Q5T0N1 1121 aa21.2■□□□□ 0.98
PNKP-221ENST00000627317 KDM2AQ9Y2K7 1162 aa21.2■□□□□ 0.98
PNKP-221ENST00000627317 PLEKHH1Q9ULM0 1364 aa21.2■□□□□ 0.98
PNKP-221ENST00000627317 STAC3Q96MF2 364 aa21.19■□□□□ 0.98
PNKP-221ENST00000627317 L3MBTL2Q969R5 705 aa21.18■□□□□ 0.98
PNKP-221ENST00000627317 JCADQ9P266 1359 aa21.18■□□□□ 0.98
PNKP-221ENST00000627317 STK26Q9P289 416 aa21.17■□□□□ 0.98
PNKP-221ENST00000627317 DLC1Q96QB1 1528 aa21.16■□□□□ 0.98
PNKP-221ENST00000627317 SIRT1Q96EB6 747 aa21.16■□□□□ 0.98
PNKP-221ENST00000627317 WAPLQ7Z5K2 1190 aa21.15■□□□□ 0.98
PNKP-221ENST00000627317 SHPRHQ149N8 1683 aa21.13■□□□□ 0.97
PNKP-221ENST00000627317 LRP6O75581 1613 aa21.11■□□□□ 0.97
PNKP-221ENST00000627317 ORAI2Q96SN7 254 aa21.09■□□□□ 0.97
PNKP-221ENST00000627317 RGS17Q9UGC6 210 aaPredicted RBP21.09■□□□□ 0.97
PNKP-221ENST00000627317 FMN2Q9NZ56 1722 aa21.09■□□□□ 0.97
PNKP-221ENST00000627317 ADGRB2O60241 1585 aa21.08■□□□□ 0.97
PNKP-221ENST00000627317 DDX17Q92841 729 aaKnown RBP21.08■□□□□ 0.97
PNKP-221ENST00000627317 SPATA31A6Q5VVP1 1343 aa21.07■□□□□ 0.96
PNKP-221ENST00000627317 TIMELESSQ9UNS1 1208 aa21.07■□□□□ 0.96
PNKP-221ENST00000627317 SOS2Q07890 1332 aaPredicted RBP21.05■□□□□ 0.96
PNKP-221ENST00000627317 PRAM1Q96QH2 718 aa21.05■□□□□ 0.96
PNKP-221ENST00000627317 KIAA1210Q9ULL0 1709 aa21.04■□□□□ 0.96
PNKP-221ENST00000627317 PHF23Q9BUL5 403 aaPredicted RBP21.04■□□□□ 0.96
PNKP-221ENST00000627317 PNPLA6Q8IY17 1366 aa21.04■□□□□ 0.96
PNKP-221ENST00000627317 PXDNQ92626 1479 aa21.03■□□□□ 0.96
PNKP-221ENST00000627317 LRRC59Q96AG4 307 aaKnown RBP21.01■□□□□ 0.95
PNKP-221ENST00000627317 TRPM1Q7Z4N2 1603 aa21■□□□□ 0.95
PNKP-221ENST00000627317 TRAK1Q9UPV9 953 aa21■□□□□ 0.95
PNKP-221ENST00000627317 ARHGEF28Q8N1W1 1705 aaKnown RBP21■□□□□ 0.95
PNKP-221ENST00000627317 SOCS7O14512 581 aa20.99■□□□□ 0.95
PNKP-221ENST00000627317 ESCO1Q5FWF5 840 aa20.99■□□□□ 0.95
PNKP-221ENST00000627317 USP32Q8NFA0 1604 aa20.99■□□□□ 0.95
PNKP-221ENST00000627317 NBPF8Q3BBV2 869 aa20.98■□□□□ 0.95
PNKP-221ENST00000627317 KIF1AQ12756 1690 aa20.98■□□□□ 0.95
PNKP-221ENST00000627317 ANKARQ7Z5J8 1434 aa20.97■□□□□ 0.95
PNKP-221ENST00000627317 SAFB2Q14151 953 aaKnown RBP eCLIP20.97■□□□□ 0.95
PNKP-221ENST00000627317 NPHP3Q7Z494 1330 aa20.97■□□□□ 0.95
PNKP-221ENST00000627317 COL22A1Q8NFW1 1626 aaPredicted RBP20.96■□□□□ 0.95
PNKP-221ENST00000627317 RALGAPBQ86X10 1494 aa20.96■□□□□ 0.95
PNKP-221ENST00000627317 NUTM2FA1L443 756 aa20.96■□□□□ 0.95
PNKP-221ENST00000627317 POGKQ9P215 609 aa20.96■□□□□ 0.95
PNKP-221ENST00000627317 ROCK2O75116 1388 aaKnown RBP20.96■□□□□ 0.95
PNKP-221ENST00000627317 NBPF1Q3BBV0 1214 aa20.95■□□□□ 0.94
PNKP-221ENST00000627317 POTEAQ6S8J7 498 aa20.94■□□□□ 0.94
PNKP-221ENST00000627317 FOXO3O43524 673 aa20.93■□□□□ 0.94
PNKP-221ENST00000627317 TULP4Q9NRJ4 1543 aa20.93■□□□□ 0.94
PNKP-221ENST00000627317 MINK1Q8N4C8 1332 aaPredicted RBP20.91■□□□□ 0.94
PNKP-221ENST00000627317 PRR36Q9H6K5 1346 aa20.91■□□□□ 0.94
PNKP-221ENST00000627317 RGPD8O14715 1765 aaPredicted RBP20.9■□□□□ 0.94
PNKP-221ENST00000627317 HIRIP3Q9BW71 556 aaPredicted RBP20.9■□□□□ 0.94
PNKP-221ENST00000627317 GPRASP1Q5JY77 1395 aa20.89■□□□□ 0.93
PNKP-221ENST00000627317 NUTM2BA6NNL0 878 aaPredicted RBP20.89■□□□□ 0.93
PNKP-221ENST00000627317 NUTM2EB1AL46 878 aaPredicted RBP20.89■□□□□ 0.93
PNKP-221ENST00000627317 XPCQ01831 940 aaPredicted RBP20.89■□□□□ 0.93
PNKP-221ENST00000627317 NUTM2AQ8IVF1 878 aaPredicted RBP20.89■□□□□ 0.93
PNKP-221ENST00000627317 PHF8Q9UPP1 1060 aa20.89■□□□□ 0.93
PNKP-221ENST00000627317 ATP7BP35670 1465 aa20.88■□□□□ 0.93
PNKP-221ENST00000627317 EIF3AQ14152 1382 aaKnown RBP20.88■□□□□ 0.93
PNKP-221ENST00000627317 WASLO00401 505 aaPredicted RBP20.88■□□□□ 0.93
PNKP-221ENST00000627317 CARD11Q9BXL7 1154 aa20.87■□□□□ 0.93
PNKP-221ENST00000627317 MEX3CQ5U5Q3 659 aaKnown RBP20.86■□□□□ 0.93
PNKP-221ENST00000627317 SPATA31A3Q5VYP0 1347 aa20.85■□□□□ 0.93
PNKP-221ENST00000627317 TNS3Q68CZ2 1445 aa20.84■□□□□ 0.93
PNKP-221ENST00000627317 SBNO1A3KN83 1393 aa20.84■□□□□ 0.93
PNKP-221ENST00000627317 TOPAZ1Q8N9V7 1692 aa20.83■□□□□ 0.92
PNKP-221ENST00000627317 AFF2P51816 1311 aa20.82■□□□□ 0.92
PNKP-221ENST00000627317 TRPM3Q9HCF6 1732 aaPredicted RBP20.82■□□□□ 0.92
PNKP-221ENST00000627317 ZNF772Q68DY9 489 aaPredicted RBP20.82■□□□□ 0.92
PNKP-221ENST00000627317 KRT28Q7Z3Y7 464 aa20.82■□□□□ 0.92
PNKP-221ENST00000627317 CENPJQ9HC77 1338 aaPredicted RBP20.79■□□□□ 0.92
PNKP-221ENST00000627317 ADAMTS2O95450 1211 aa20.79■□□□□ 0.92
PNKP-221ENST00000627317 PMFBP1Q8TBY8 1022 aa20.79■□□□□ 0.92
PNKP-221ENST00000627317 C8orf37Q96NL8 207 aa20.79■□□□□ 0.92
PNKP-221ENST00000627317 QRICH2Q9H0J4 1663 aa20.78■□□□□ 0.92
PNKP-221ENST00000627317 ITSN1Q15811 1721 aa20.78■□□□□ 0.92
PNKP-221ENST00000627317 NUDT16Q96DE0 195 aaKnown RBP20.77■□□□□ 0.92
PNKP-221ENST00000627317 CDK19Q9BWU1 502 aa20.77■□□□□ 0.92
PNKP-221ENST00000627317 ALS2Q96Q42 1657 aa20.77■□□□□ 0.91
PNKP-221ENST00000627317 ABCA3Q99758 1704 aa20.76■□□□□ 0.91
PNKP-221ENST00000627317 USP47Q96K76 1375 aa20.76■□□□□ 0.91
PNKP-221ENST00000627317 PSME1Q06323 249 aa20.76■□□□□ 0.91
PNKP-221ENST00000627317 FNBP4Q8N3X1 1017 aaPredicted RBP20.76■□□□□ 0.91
PNKP-221ENST00000627317 CDK12Q9NYV4 1490 aaPredicted RBP20.75■□□□□ 0.91
PNKP-221ENST00000627317 POLR3AO14802 1390 aaPredicted RBP20.75■□□□□ 0.91
PNKP-221ENST00000627317 ARHGEF10O15013 1369 aa20.75■□□□□ 0.91
PNKP-221ENST00000627317 MARF1Q9Y4F3 1742 aaKnown RBP20.75■□□□□ 0.91
PNKP-221ENST00000627317 BCL9LQ86UU0 1499 aa20.73■□□□□ 0.91
PNKP-221ENST00000627317 ZEB1P37275 1124 aaPredicted RBP20.72■□□□□ 0.91
PNKP-221ENST00000627317 NGLY1Q96IV0 654 aa20.72■□□□□ 0.91
PNKP-221ENST00000627317 ATRNO75882 1429 aa20.71■□□□□ 0.91
PNKP-221ENST00000627317 PLEKHG3A1L390 1219 aa20.71■□□□□ 0.91
PNKP-221ENST00000627317 CCDC61Q9Y6R9 512 aa20.71■□□□□ 0.91
PNKP-221ENST00000627317 SLIT2O94813 1529 aa20.71■□□□□ 0.91
PNKP-221ENST00000627317 CRYBG1Q9Y4K1 1723 aa20.7■□□□□ 0.9
PNKP-221ENST00000627317 RGS12O14924 1447 aa20.69■□□□□ 0.9
PNKP-221ENST00000627317 RXRBP28702 533 aa20.68■□□□□ 0.9
PNKP-221ENST00000627317 NGDNQ8NEJ9 315 aaKnown RBP20.68■□□□□ 0.9
PNKP-221ENST00000627317 CABLES1Q8TDN4 633 aa20.68■□□□□ 0.9
PNKP-221ENST00000627317 SBNO2Q9Y2G9 1366 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms