RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ADGRL3Q9HAR2 1447 aa27.16■■□□□ 1.94
SQSTM1-216ENST00000626660 PRAM1Q96QH2 718 aa27.16■■□□□ 1.94
SQSTM1-216ENST00000626660 C19orf44Q9H6X5 657 aa27.16■■□□□ 1.94
SQSTM1-216ENST00000626660 CARD11Q9BXL7 1154 aa27.15■■□□□ 1.94
SQSTM1-216ENST00000626660 NALCNQ8IZF0 1738 aa27.15■■□□□ 1.94
SQSTM1-216ENST00000626660 PLEKHH1Q9ULM0 1364 aa27.14■■□□□ 1.94
SQSTM1-216ENST00000626660 PIP4K2BP78356 416 aa27.14■■□□□ 1.94
SQSTM1-216ENST00000626660 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.13■■□□□ 1.93
SQSTM1-216ENST00000626660 TOM1O60784 492 aa27.13■■□□□ 1.93
SQSTM1-216ENST00000626660 DCCP43146 1447 aa27.11■■□□□ 1.93
SQSTM1-216ENST00000626660 ATF3P18847 181 aa27.11■■□□□ 1.93
SQSTM1-216ENST00000626660 SAFB2Q14151 953 aaKnown RBP eCLIP27.11■■□□□ 1.93
SQSTM1-216ENST00000626660 EIF3AQ14152 1382 aaKnown RBP27.1■■□□□ 1.93
SQSTM1-216ENST00000626660 CADPS2Q86UW7 1296 aa27.09■■□□□ 1.93
SQSTM1-216ENST00000626660 CENPJQ9HC77 1338 aaPredicted RBP27.06■■□□□ 1.92
SQSTM1-216ENST00000626660 CDC42BPGQ6DT37 1551 aa27.05■■□□□ 1.92
SQSTM1-216ENST00000626660 HSPA1LP34931 641 aa27.05■■□□□ 1.92
SQSTM1-216ENST00000626660 MINK1Q8N4C8 1332 aaPredicted RBP27.03■■□□□ 1.92
SQSTM1-216ENST00000626660 QRICH2Q9H0J4 1663 aa27.02■■□□□ 1.92
SQSTM1-216ENST00000626660 ADGRB2O60241 1585 aa27.01■■□□□ 1.92
SQSTM1-216ENST00000626660 SLAIN2Q9P270 581 aa27■■□□□ 1.91
SQSTM1-216ENST00000626660 HIRIP3Q9BW71 556 aaPredicted RBP26.99■■□□□ 1.91
SQSTM1-216ENST00000626660 FMN2Q9NZ56 1722 aa26.97■■□□□ 1.91
SQSTM1-216ENST00000626660 MST1RQ04912 1400 aa26.97■■□□□ 1.91
SQSTM1-216ENST00000626660 PHF23Q9BUL5 403 aaPredicted RBP26.96■■□□□ 1.91
SQSTM1-216ENST00000626660 USP47Q96K76 1375 aa26.96■■□□□ 1.91
SQSTM1-216ENST00000626660 WASLO00401 505 aaPredicted RBP26.93■■□□□ 1.9
SQSTM1-216ENST00000626660 C1orf167Q5SNV9 1468 aa26.92■■□□□ 1.9
SQSTM1-216ENST00000626660 MED1Q15648 1581 aaPredicted RBP26.92■■□□□ 1.9
SQSTM1-216ENST00000626660 ROBO1Q9Y6N7 1651 aa26.91■■□□□ 1.9
SQSTM1-216ENST00000626660 SBNO2Q9Y2G9 1366 aa26.9■■□□□ 1.9
SQSTM1-216ENST00000626660 NUTM2FA1L443 756 aa26.9■■□□□ 1.9
SQSTM1-216ENST00000626660 ST20-MTHFSA0A0A6YYL1 179 aa26.89■■□□□ 1.9
SQSTM1-216ENST00000626660 CDK19Q9BWU1 502 aa26.88■■□□□ 1.89
SQSTM1-216ENST00000626660 TULP4Q9NRJ4 1543 aa26.88■■□□□ 1.89
SQSTM1-216ENST00000626660 ANKARQ7Z5J8 1434 aa26.88■■□□□ 1.89
SQSTM1-216ENST00000626660 EVC2Q86UK5 1308 aa26.88■■□□□ 1.89
SQSTM1-216ENST00000626660 SLC24A1O60721 1099 aa26.86■■□□□ 1.89
SQSTM1-216ENST00000626660 ZEB1P37275 1124 aaPredicted RBP26.86■■□□□ 1.89
SQSTM1-216ENST00000626660 EIF4G2P78344 907 aaKnown RBP eCLIP26.86■■□□□ 1.89
SQSTM1-216ENST00000626660 RGPD8O14715 1765 aaPredicted RBP26.85■■□□□ 1.89
SQSTM1-216ENST00000626660 SRPK2P78362 688 aaKnown RBP26.85■■□□□ 1.89
SQSTM1-216ENST00000626660 ESCO1Q5FWF5 840 aa26.85■■□□□ 1.89
SQSTM1-216ENST00000626660 BRINP3Q76B58 766 aa26.85■■□□□ 1.89
SQSTM1-216ENST00000626660 ORAI2Q96SN7 254 aa26.83■■□□□ 1.89
SQSTM1-216ENST00000626660 USP32Q8NFA0 1604 aa26.83■■□□□ 1.88
SQSTM1-216ENST00000626660 ITSN1Q15811 1721 aa26.82■■□□□ 1.88
SQSTM1-216ENST00000626660 KIF1AQ12756 1690 aa26.8■■□□□ 1.88
SQSTM1-216ENST00000626660 NUDT16Q96DE0 195 aaKnown RBP26.8■■□□□ 1.88
SQSTM1-216ENST00000626660 TESK2Q96S53 571 aa26.8■■□□□ 1.88
SQSTM1-216ENST00000626660 HSPA5P11021 654 aaKnown RBP26.79■■□□□ 1.88
SQSTM1-216ENST00000626660 CABP2Q9NPB3 220 aa26.79■■□□□ 1.88
SQSTM1-216ENST00000626660 PRR36Q9H6K5 1346 aa26.79■■□□□ 1.88
SQSTM1-216ENST00000626660 ATP7BP35670 1465 aa26.79■■□□□ 1.88
SQSTM1-216ENST00000626660 PHF8Q9UPP1 1060 aa26.77■■□□□ 1.88
SQSTM1-216ENST00000626660 TMF1P82094 1093 aa26.76■■□□□ 1.87
SQSTM1-216ENST00000626660 PHLPP1O60346 1717 aa26.76■■□□□ 1.87
SQSTM1-216ENST00000626660 AHDC1Q5TGY3 1603 aaPredicted RBP26.76■■□□□ 1.87
SQSTM1-216ENST00000626660 CCDC61Q9Y6R9 512 aa26.75■■□□□ 1.87
SQSTM1-216ENST00000626660 NHSL1Q5SYE7 1610 aa26.75■■□□□ 1.87
SQSTM1-216ENST00000626660 TOPAZ1Q8N9V7 1692 aa26.74■■□□□ 1.87
SQSTM1-216ENST00000626660 ATAD2Q6PL18 1390 aa26.73■■□□□ 1.87
SQSTM1-216ENST00000626660 NPHP3Q7Z494 1330 aa26.72■■□□□ 1.87
SQSTM1-216ENST00000626660 PMFBP1Q8TBY8 1022 aa26.72■■□□□ 1.87
SQSTM1-216ENST00000626660 CDCA8Q53HL2 280 aa26.71■■□□□ 1.87
SQSTM1-216ENST00000626660 PUS7Q96PZ0 661 aaKnown RBP26.71■■□□□ 1.87
SQSTM1-216ENST00000626660 FOXO3O43524 673 aa26.7■■□□□ 1.86
SQSTM1-216ENST00000626660 PPIP5K1Q6PFW1 1433 aa26.7■■□□□ 1.86
SQSTM1-216ENST00000626660 NGDNQ8NEJ9 315 aaKnown RBP26.69■■□□□ 1.86
SQSTM1-216ENST00000626660 DDX17Q92841 729 aaKnown RBP26.68■■□□□ 1.86
SQSTM1-216ENST00000626660 COL16A1Q07092 1604 aaPredicted RBP26.67■■□□□ 1.86
SQSTM1-216ENST00000626660 PLEKHG3A1L390 1219 aa26.66■■□□□ 1.86
SQSTM1-216ENST00000626660 PSME1Q06323 249 aa26.65■■□□□ 1.86
SQSTM1-216ENST00000626660 CABP1Q9NZU7 370 aa26.65■■□□□ 1.86
SQSTM1-216ENST00000626660 SOS2Q07890 1332 aaPredicted RBP26.64■■□□□ 1.85
SQSTM1-216ENST00000626660 PXDNQ92626 1479 aa26.63■■□□□ 1.85
SQSTM1-216ENST00000626660 XPCQ01831 940 aaPredicted RBP26.63■■□□□ 1.85
SQSTM1-216ENST00000626660 KRT28Q7Z3Y7 464 aa26.63■■□□□ 1.85
SQSTM1-216ENST00000626660 ACEP12821 1306 aa26.63■■□□□ 1.85
SQSTM1-216ENST00000626660 POLR3AO14802 1390 aaPredicted RBP26.62■■□□□ 1.85
SQSTM1-216ENST00000626660 TMC1Q8TDI8 760 aa26.62■■□□□ 1.85
SQSTM1-216ENST00000626660 LRRC59Q96AG4 307 aaKnown RBP26.61■■□□□ 1.85
SQSTM1-216ENST00000626660 NINLQ9Y2I6 1382 aa26.6■■□□□ 1.85
SQSTM1-216ENST00000626660 POLR3GLQ9BT43 218 aa26.57■■□□□ 1.84
SQSTM1-216ENST00000626660 JCADQ9P266 1359 aa26.57■■□□□ 1.84
SQSTM1-216ENST00000626660 AKAP12Q02952 1782 aa26.56■■□□□ 1.84
SQSTM1-216ENST00000626660 ZNF692Q9BU19 519 aaPredicted RBP26.55■■□□□ 1.84
SQSTM1-216ENST00000626660 SLC12A5Q9H2X9 1139 aa26.55■■□□□ 1.84
SQSTM1-216ENST00000626660 TERF2IPQ9NYB0 399 aa26.55■■□□□ 1.84
SQSTM1-216ENST00000626660 SBNO1A3KN83 1393 aa26.55■■□□□ 1.84
SQSTM1-216ENST00000626660 HDGFL2Q7Z4V5 671 aaPredicted RBP26.54■■□□□ 1.84
SQSTM1-216ENST00000626660 SHPRHQ149N8 1683 aa26.54■■□□□ 1.84
SQSTM1-216ENST00000626660 TRPM3Q9HCF6 1732 aaPredicted RBP26.53■■□□□ 1.84
SQSTM1-216ENST00000626660 TNS3Q68CZ2 1445 aa26.53■■□□□ 1.84
SQSTM1-216ENST00000626660 BRD4O60885 1362 aaPredicted RBP26.52■■□□□ 1.84
SQSTM1-216ENST00000626660 PAK3O75914 559 aaPredicted RBP26.52■■□□□ 1.84
SQSTM1-216ENST00000626660 SPATA31A3Q5VYP0 1347 aa26.52■■□□□ 1.84
SQSTM1-216ENST00000626660 USP6P35125 1406 aa26.51■■□□□ 1.83
SQSTM1-216ENST00000626660 CPSF1Q10570 1443 aaKnown RBP26.51■■□□□ 1.83
SQSTM1-216ENST00000626660 KTN1Q86UP2 1357 aaKnown RBP26.51■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms