RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 MORC1Q86VD1 984 aa11.13□□□□□ -0.63
VCL-207ENST00000624354 UHRF1BP1LA0JNW5 1464 aa11.13□□□□□ -0.63
VCL-207ENST00000624354 ZCCHC11Q5TAX3 1644 aaKnown RBP11.13□□□□□ -0.63
VCL-207ENST00000624354 NEUROD2Q15784 382 aa11.12□□□□□ -0.63
VCL-207ENST00000624354 PMFBP1Q8TBY8 1022 aa11.12□□□□□ -0.63
VCL-207ENST00000624354 NEURL4Q96JN8 1562 aa11.12□□□□□ -0.63
VCL-207ENST00000624354 RUNDC1Q96C34 613 aa11.12□□□□□ -0.63
VCL-207ENST00000624354 SBNO2Q9Y2G9 1366 aa11.12□□□□□ -0.63
VCL-207ENST00000624354 USP19O94966 1318 aa11.12□□□□□ -0.63
VCL-207ENST00000624354 DEPDC5O75140 1603 aa11.12□□□□□ -0.63
VCL-207ENST00000624354 ARAP3Q8WWN8 1544 aa11.12□□□□□ -0.63
VCL-207ENST00000624354 MAP3K4Q9Y6R4 1608 aa11.11□□□□□ -0.63
VCL-207ENST00000624354 CHGAP10645 457 aaKnown RBP11.11□□□□□ -0.63
VCL-207ENST00000624354 RARSP54136 660 aaKnown RBP11.11□□□□□ -0.63
VCL-207ENST00000624354 UPF2Q9HAU5 1272 aaKnown RBP11.11□□□□□ -0.63
VCL-207ENST00000624354 TNNT2P45379 298 aaPredicted RBP11.1□□□□□ -0.63
VCL-207ENST00000624354 HSP90AA2PQ14568 343 aaPredicted RBP11.1□□□□□ -0.63
VCL-207ENST00000624354 RRAGDQ9NQL2 400 aaPredicted RBP11.1□□□□□ -0.63
VCL-207ENST00000624354 VWDEQ8N2E2 1590 aa11.1□□□□□ -0.63
VCL-207ENST00000624354 ATP7AQ04656 1500 aa11.1□□□□□ -0.63
VCL-207ENST00000624354 TCP11L2Q8N4U5 519 aa11.1□□□□□ -0.63
VCL-207ENST00000624354 RRP7AQ9Y3A4 280 aaKnown RBP11.1□□□□□ -0.63
VCL-207ENST00000624354 NSD3Q9BZ95 1437 aa11.1□□□□□ -0.63
VCL-207ENST00000624354 SEC24BO95487 1268 aa11.09□□□□□ -0.63
VCL-207ENST00000624354 NUTM2DQ5VT03 806 aaPredicted RBP11.09□□□□□ -0.63
VCL-207ENST00000624354 WDR63Q8IWG1 891 aa11.09□□□□□ -0.63
VCL-207ENST00000624354 ABCA6Q8N139 1617 aa11.09□□□□□ -0.63
VCL-207ENST00000624354 NAP1L5Q96NT1 182 aaPredicted RBP11.09□□□□□ -0.63
VCL-207ENST00000624354 CFAP53Q96M91 514 aa11.08□□□□□ -0.64
VCL-207ENST00000624354 UGGT1Q9NYU2 1555 aa11.08□□□□□ -0.64
VCL-207ENST00000624354 HSP90AA1P07900 732 aaKnown RBP11.08□□□□□ -0.64
VCL-207ENST00000624354 SLC12A5Q9H2X9 1139 aa11.08□□□□□ -0.64
VCL-207ENST00000624354 TRAK1Q9UPV9 953 aa11.08□□□□□ -0.64
VCL-207ENST00000624354 FANCAO15360 1455 aa11.08□□□□□ -0.64
VCL-207ENST00000624354 RRP9O43818 475 aaKnown RBP11.07□□□□□ -0.64
VCL-207ENST00000624354 PHF23Q9BUL5 403 aaPredicted RBP11.07□□□□□ -0.64
VCL-207ENST00000624354 RWDD1Q9H446 243 aaPredicted RBP11.07□□□□□ -0.64
VCL-207ENST00000624354 PCDHB15Q9Y5E8 787 aa11.07□□□□□ -0.64
VCL-207ENST00000624354 ZMYM3Q14202 1370 aa11.07□□□□□ -0.64
VCL-207ENST00000624354 CCDC27Q2M243 656 aa11.06□□□□□ -0.64
VCL-207ENST00000624354 L1TD1Q5T7N2 865 aaKnown RBP11.06□□□□□ -0.64
VCL-207ENST00000624354 BCL2L13Q9BXK5 485 aa11.06□□□□□ -0.64
VCL-207ENST00000624354 SLKQ9H2G2 1235 aaPredicted RBP11.06□□□□□ -0.64
VCL-207ENST00000624354 MYH16Q9H6N6 1097 aa11.06□□□□□ -0.64
VCL-207ENST00000624354 INO80Q9ULG1 1556 aaPredicted RBP11.06□□□□□ -0.64
VCL-207ENST00000624354 RLBP1P12271 317 aa11.06□□□□□ -0.64
VCL-207ENST00000624354 MTHFSP49914 203 aa11.06□□□□□ -0.64
VCL-207ENST00000624354 PODXL2Q9NZ53 605 aa11.06□□□□□ -0.64
VCL-207ENST00000624354 PDZRN3Q9UPQ7 1066 aa11.06□□□□□ -0.64
VCL-207ENST00000624354 NOS1P29475 1434 aa11.05□□□□□ -0.64
VCL-207ENST00000624354 NRXN1Q9ULB1 1477 aa11.05□□□□□ -0.64
VCL-207ENST00000624354 PNNQ9H307 717 aaKnown RBP11.05□□□□□ -0.64
VCL-207ENST00000624354 TSPOAP1O95153 1857 aa11.05□□□□□ -0.64
VCL-207ENST00000624354 ADGRL1O94910 1474 aa11.05□□□□□ -0.64
VCL-207ENST00000624354 CD109Q6YHK3 1445 aa11.05□□□□□ -0.64
VCL-207ENST00000624354 MYO3AQ8NEV4 1616 aa11.04□□□□□ -0.64
VCL-207ENST00000624354 TBC1D32Q96NH3 1257 aa11.04□□□□□ -0.64
VCL-207ENST00000624354 TNNQ9UQP3 1299 aa11.04□□□□□ -0.64
VCL-207ENST00000624354 IQSEC2Q5JU85 1478 aa11.04□□□□□ -0.64
VCL-207ENST00000624354 C14orf93Q9H972 538 aaKnown RBP11.04□□□□□ -0.64
VCL-207ENST00000624354 EFCAB6Q5THR3 1501 aa11.04□□□□□ -0.64
VCL-207ENST00000624354 NCBP3Q53F19 620 aaKnown RBP11.04□□□□□ -0.64
VCL-207ENST00000624354 KIF1BO60333 1816 aa11.03□□□□□ -0.64
VCL-207ENST00000624354 NLRP1Q9C000 1473 aa11.03□□□□□ -0.64
VCL-207ENST00000624354 VIRMAQ69YN4 1812 aaKnown RBP11.03□□□□□ -0.64
VCL-207ENST00000624354 SETBP1Q9Y6X0 1596 aa11.03□□□□□ -0.64
VCL-207ENST00000624354 FTSJ3Q8IY81 847 aaKnown RBP11.03□□□□□ -0.64
VCL-207ENST00000624354 POGKQ9P215 609 aa11.03□□□□□ -0.64
VCL-207ENST00000624354 MROH1Q8NDA8 1641 aa11.03□□□□□ -0.64
VCL-207ENST00000624354 ZNF518AQ6AHZ1 1483 aa11.02□□□□□ -0.64
VCL-207ENST00000624354 U2AF1L5P0DN76 240 aaPredicted RBP11.02□□□□□ -0.64
VCL-207ENST00000624354 U2AF1Q01081 240 aaKnown RBP eCLIP11.02□□□□□ -0.641e-8■□□□□ 9.3
VCL-207ENST00000624354 MVPQ14764 893 aaKnown RBP11.02□□□□□ -0.64
VCL-207ENST00000624354 ZKSCAN2Q63HK3 967 aa11.02□□□□□ -0.64
VCL-207ENST00000624354 CFAP65Q6ZU64 1925 aaKnown RBP11.02□□□□□ -0.65
VCL-207ENST00000624354 TMEM132EQ6IEE7 984 aa11.02□□□□□ -0.65
VCL-207ENST00000624354 SHPRHQ149N8 1683 aa11.02□□□□□ -0.65
VCL-207ENST00000624354 ABCA9Q8IUA7 1624 aa11.01□□□□□ -0.65
VCL-207ENST00000624354 TBC1D2Q9BYX2 928 aa11.01□□□□□ -0.65
VCL-207ENST00000624354 ANTXR1Q9H6X2 564 aa11.01□□□□□ -0.65
VCL-207ENST00000624354 CT47B1P0C2W7 299 aaPredicted RBP11.01□□□□□ -0.65
VCL-207ENST00000624354 DZIP1LQ8IYY4 767 aaKnown RBP11.01□□□□□ -0.65
VCL-207ENST00000624354 ADGRB3O60242 1522 aa11.01□□□□□ -0.65
VCL-207ENST00000624354 EVC2Q86UK5 1308 aa11□□□□□ -0.65
VCL-207ENST00000624354 IFT172Q9UG01 1749 aa11□□□□□ -0.65
VCL-207ENST00000624354 PUS7Q96PZ0 661 aaKnown RBP11□□□□□ -0.65
VCL-207ENST00000624354 LMTK2Q8IWU2 1503 aa11□□□□□ -0.65
VCL-207ENST00000624354 RPGRIP1LQ68CZ1 1315 aa11□□□□□ -0.65
VCL-207ENST00000624354 NSD2O96028 1365 aa11□□□□□ -0.65
VCL-207ENST00000624354 MROH2AA6NES4 1674 aa11□□□□□ -0.65
VCL-207ENST00000624354 CLCN1P35523 988 aa10.99□□□□□ -0.65
VCL-207ENST00000624354 PLEKHG5O94827 1062 aa10.99□□□□□ -0.65
VCL-207ENST00000624354 PPRC1Q5VV67 1664 aaKnown RBP10.99□□□□□ -0.65
VCL-207ENST00000624354 ANKRD36BQ8N2N9 1353 aa10.99□□□□□ -0.65
VCL-207ENST00000624354 SMC4Q9NTJ3 1288 aa10.99□□□□□ -0.65
VCL-207ENST00000624354 DDX19BQ9UMR2 479 aa10.97□□□□□ -0.65
VCL-207ENST00000624354 ADGRB1O14514 1584 aa10.97□□□□□ -0.65
VCL-207ENST00000624354 NPATQ14207 1427 aa10.97□□□□□ -0.65
VCL-207ENST00000624354 TSR2Q969E8 191 aaKnown RBP10.97□□□□□ -0.65
VCL-207ENST00000624354 C22orf23Q9BZE7 217 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms