RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 STAC3Q96MF2 364 aa10.71□□□□□ -0.69
VCL-206ENST00000623461 HMGXB3Q12766 1538 aa10.71□□□□□ -0.7
VCL-206ENST00000623461 ERCC6Q03468 1493 aa10.7□□□□□ -0.7
VCL-206ENST00000623461 PDCP20941 246 aa10.7□□□□□ -0.7
VCL-206ENST00000623461 ADAMTS8Q9UP79 889 aa10.7□□□□□ -0.7
VCL-206ENST00000623461 TRIM29Q14134 588 aa10.7□□□□□ -0.7
VCL-206ENST00000623461 OLFM4Q6UX06 510 aa10.7□□□□□ -0.7
VCL-206ENST00000623461 STK26Q9P289 416 aa10.7□□□□□ -0.7
VCL-206ENST00000623461 WDR33Q9C0J8 1336 aaKnown RBP10.7□□□□□ -0.7
VCL-206ENST00000623461 CGNQ9P2M7 1197 aaKnown RBP10.69□□□□□ -0.7
VCL-206ENST00000623461 PDS5BQ9NTI5 1447 aa10.69□□□□□ -0.7
VCL-206ENST00000623461 KIF2AO00139 706 aaPredicted RBP10.69□□□□□ -0.7
VCL-206ENST00000623461 CT47B1P0C2W7 299 aaPredicted RBP10.69□□□□□ -0.7
VCL-206ENST00000623461 HSP90AB4PQ58FF6 505 aa10.69□□□□□ -0.7
VCL-206ENST00000623461 KIF21AQ7Z4S6 1674 aa10.69□□□□□ -0.7
VCL-206ENST00000623461 ERLIN1O75477 346 aa10.69□□□□□ -0.7
VCL-206ENST00000623461 CCDC47Q96A33 483 aaKnown RBP10.69□□□□□ -0.7
VCL-206ENST00000623461 WDR97A6NE52 1622 aa10.69□□□□□ -0.7
VCL-206ENST00000623461 MYOM3Q5VTT5 1437 aa10.69□□□□□ -0.7
VCL-206ENST00000623461 PSMA5P28066 241 aa10.69□□□□□ -0.7
VCL-206ENST00000623461 RRP12Q5JTH9 1297 aaKnown RBP10.68□□□□□ -0.7
VCL-206ENST00000623461 AEBP1Q8IUX7 1158 aa10.68□□□□□ -0.7
VCL-206ENST00000623461 PLEKHG5O94827 1062 aa10.68□□□□□ -0.7
VCL-206ENST00000623461 RIPK4P57078 832 aa10.68□□□□□ -0.7
VCL-206ENST00000623461 GNAI1P63096 354 aa10.68□□□□□ -0.7
VCL-206ENST00000623461 CBX1P83916 185 aa10.68□□□□□ -0.7
VCL-206ENST00000623461 PLEKHH2Q8IVE3 1493 aa10.68□□□□□ -0.7
VCL-206ENST00000623461 ERC2O15083 957 aa10.68□□□□□ -0.7
VCL-206ENST00000623461 SPC24Q8NBT2 197 aa10.68□□□□□ -0.7
VCL-206ENST00000623461 PDIA4P13667 645 aaKnown RBP10.67□□□□□ -0.7
VCL-206ENST00000623461 EVC2Q86UK5 1308 aa10.67□□□□□ -0.7
VCL-206ENST00000623461 PATL2C9JE40 543 aaKnown RBP10.67□□□□□ -0.7
VCL-206ENST00000623461 KIAA0754O94854 1291 aa10.67□□□□□ -0.7
VCL-206ENST00000623461 NEK4P51957 841 aa10.67□□□□□ -0.7
VCL-206ENST00000623461 SYNE3Q6ZMZ3 975 aa10.67□□□□□ -0.7
VCL-206ENST00000623461 PRIMPOLQ96LW4 560 aa10.67□□□□□ -0.7
VCL-206ENST00000623461 CUL7Q14999 1698 aa10.67□□□□□ -0.7
VCL-206ENST00000623461 DIAPH1O60610 1272 aaKnown RBP10.66□□□□□ -0.7
VCL-206ENST00000623461 CLSTN1O94985 981 aa10.66□□□□□ -0.7
VCL-206ENST00000623461 AKAP17AQ02040 695 aaKnown RBP10.66□□□□□ -0.7
VCL-206ENST00000623461 PRDM10Q9NQV6 1147 aa10.66□□□□□ -0.7
VCL-206ENST00000623461 KINO60870 393 aaKnown RBP10.66□□□□□ -0.7
VCL-206ENST00000623461 EFCAB2Q5VUJ9 269 aa10.66□□□□□ -0.7
VCL-206ENST00000623461 DCAF8L1A6NGE4 600 aa10.66□□□□□ -0.7
VCL-206ENST00000623461 SOX12O15370 315 aa10.66□□□□□ -0.7
VCL-206ENST00000623461 ELL2O00472 640 aaPredicted RBP10.66□□□□□ -0.7
VCL-206ENST00000623461 SDF4Q9BRK5 362 aa10.66□□□□□ -0.7
VCL-206ENST00000623461 IFIT2P09913 472 aaKnown RBP10.66□□□□□ -0.7
VCL-206ENST00000623461 PCMTD1Q96MG8 357 aaPredicted RBP10.65□□□□□ -0.7
VCL-206ENST00000623461 SCAPERQ9BY12 1400 aa10.65□□□□□ -0.7
VCL-206ENST00000623461 CPLX1O14810 134 aa10.65□□□□□ -0.7
VCL-206ENST00000623461 SMC2O95347 1197 aa10.65□□□□□ -0.7
VCL-206ENST00000623461 SMARCE1Q969G3 411 aa10.65□□□□□ -0.7
VCL-206ENST00000623461 TRHP20396 242 aaPredicted RBP10.65□□□□□ -0.7
VCL-206ENST00000623461 GTPBP4Q9BZE4 634 aaKnown RBP10.64□□□□□ -0.71
VCL-206ENST00000623461 PDILTQ8N807 584 aa10.64□□□□□ -0.71
VCL-206ENST00000623461 PPP2R1AP30153 589 aa10.64□□□□□ -0.71
VCL-206ENST00000623461 TAF7LQ5H9L4 462 aa10.64□□□□□ -0.71
VCL-206ENST00000623461 CAGE1Q8TC20 777 aa10.64□□□□□ -0.71
VCL-206ENST00000623461 ERICH4A6NGS2 130 aa10.64□□□□□ -0.71
VCL-206ENST00000623461 TNMDQ9H2S6 317 aa10.64□□□□□ -0.71
VCL-206ENST00000623461 ZNF396Q96N95 335 aaPredicted RBP10.64□□□□□ -0.71
VCL-206ENST00000623461 PEG3Q9GZU2 1588 aa10.64□□□□□ -0.71
VCL-206ENST00000623461 HNRNPMP52272 730 aaKnown RBP eCLIP10.63□□□□□ -0.711e-6■■■■□ 22.5
VCL-206ENST00000623461 CNTROBQ8N137 903 aa10.63□□□□□ -0.71
VCL-206ENST00000623461 WDR63Q8IWG1 891 aa10.63□□□□□ -0.71
VCL-206ENST00000623461 PDE4CQ08493 712 aa10.63□□□□□ -0.71
VCL-206ENST00000623461 TMCO3Q6UWJ1 677 aa10.63□□□□□ -0.71
VCL-206ENST00000623461 MYO6Q9UM54 1294 aa10.63□□□□□ -0.71
VCL-206ENST00000623461 MVPQ14764 893 aaKnown RBP10.63□□□□□ -0.71
VCL-206ENST00000623461 AXDND1Q5T1B0 1012 aaPredicted RBP10.63□□□□□ -0.71
VCL-206ENST00000623461 CBFA2T2O43439 604 aa10.63□□□□□ -0.71
VCL-206ENST00000623461 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.63□□□□□ -0.71
VCL-206ENST00000623461 FAM107BQ9H098 131 aa10.63□□□□□ -0.71
VCL-206ENST00000623461 CCDC27Q2M243 656 aa10.62□□□□□ -0.71
VCL-206ENST00000623461 BCL11BQ9C0K0 894 aaPredicted RBP10.62□□□□□ -0.71
VCL-206ENST00000623461 FYCO1Q9BQS8 1478 aa10.62□□□□□ -0.71
VCL-206ENST00000623461 FIBPO43427 364 aa10.62□□□□□ -0.71
VCL-206ENST00000623461 NBPF1Q3BBV0 1214 aa10.62□□□□□ -0.71
VCL-206ENST00000623461 LMOD2Q6P5Q4 547 aa10.62□□□□□ -0.71
VCL-206ENST00000623461 XPCQ01831 940 aaPredicted RBP10.62□□□□□ -0.71
VCL-206ENST00000623461 FILIP1LQ4L180 1135 aa10.62□□□□□ -0.71
VCL-206ENST00000623461 KRT85P78386 507 aa10.62□□□□□ -0.71
VCL-206ENST00000623461 PPP4R3BQ5MIZ7 849 aa10.62□□□□□ -0.71
VCL-206ENST00000623461 KRI1Q8N9T8 703 aaKnown RBP10.62□□□□□ -0.71
VCL-206ENST00000623461 TRAK1Q9UPV9 953 aa10.62□□□□□ -0.71
VCL-206ENST00000623461 BCAR3O75815 825 aa10.62□□□□□ -0.71
VCL-206ENST00000623461 CHD1LQ86WJ1 897 aa10.61□□□□□ -0.71
VCL-206ENST00000623461 TIGD1Q96MW7 591 aa10.61□□□□□ -0.71
VCL-206ENST00000623461 DNAJC2Q99543 621 aaKnown RBP10.61□□□□□ -0.71
VCL-206ENST00000623461 GBP3Q9H0R5 595 aa10.61□□□□□ -0.71
VCL-206ENST00000623461 HIP1O00291 1037 aa10.61□□□□□ -0.71
VCL-206ENST00000623461 UBXN4Q92575 508 aa10.61□□□□□ -0.71
VCL-206ENST00000623461 ZHX1Q9UKY1 873 aaPredicted RBP10.61□□□□□ -0.71
VCL-206ENST00000623461 FBXW7Q969H0 707 aa10.61□□□□□ -0.71
VCL-206ENST00000623461 SYCE3A1L190 88 aa10.61□□□□□ -0.71
VCL-206ENST00000623461 UVSSAQ2YD98 709 aa10.61□□□□□ -0.71
VCL-206ENST00000623461 FILIP1Q7Z7B0 1213 aa10.61□□□□□ -0.71
VCL-206ENST00000623461 SAFBQ15424 915 aaKnown RBP eCLIP10.61□□□□□ -0.71
VCL-206ENST00000623461 CCDC184Q52MB2 194 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms