RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 MPHOSPH9Q99550 1183 aa35.55■■■■□ 3.28
CPSF1-214ENST00000622776 SPATA31E1Q6ZUB1 1445 aa35.54■■■■□ 3.28
CPSF1-214ENST00000622776 ANKRD30BQ9BXX2 1392 aa35.51■■■■□ 3.28
CPSF1-214ENST00000622776 STK26Q9P289 416 aa35.51■■■■□ 3.28
CPSF1-214ENST00000622776 ESCO1Q5FWF5 840 aa35.5■■■■□ 3.27
CPSF1-214ENST00000622776 CDC42BPGQ6DT37 1551 aa35.49■■■■□ 3.27
CPSF1-214ENST00000622776 RGS12O14924 1447 aa35.49■■■■□ 3.27
CPSF1-214ENST00000622776 LRPPRCP42704 1394 aaKnown RBP35.48■■■■□ 3.27
CPSF1-214ENST00000622776 WAPLQ7Z5K2 1190 aa35.47■■■■□ 3.27
CPSF1-214ENST00000622776 NPHP3Q7Z494 1330 aa35.47■■■■□ 3.27
CPSF1-214ENST00000622776 TECPR2O15040 1411 aa35.47■■■■□ 3.27
CPSF1-214ENST00000622776 ABCC11Q96J66 1382 aa35.44■■■■□ 3.26
CPSF1-214ENST00000622776 TMEM132EQ6IEE7 984 aa35.44■■■■□ 3.26
CPSF1-214ENST00000622776 USP21Q9UK80 565 aa35.43■■■■□ 3.26
CPSF1-214ENST00000622776 FOXO3O43524 673 aa35.42■■■■□ 3.26
CPSF1-214ENST00000622776 IFT172Q9UG01 1749 aa35.42■■■■□ 3.26
CPSF1-214ENST00000622776 FNBP4Q8N3X1 1017 aaPredicted RBP35.4■■■■□ 3.26
CPSF1-214ENST00000622776 PIK3C2GO75747 1445 aa35.4■■■■□ 3.26
CPSF1-214ENST00000622776 COL22A1Q8NFW1 1626 aaPredicted RBP35.39■■■■□ 3.26
CPSF1-214ENST00000622776 NUTM2FA1L443 756 aa35.39■■■■□ 3.26
CPSF1-214ENST00000622776 PXDNQ92626 1479 aa35.39■■■■□ 3.26
CPSF1-214ENST00000622776 PLEKHH1Q9ULM0 1364 aa35.38■■■■□ 3.26
CPSF1-214ENST00000622776 XPCQ01831 940 aaPredicted RBP35.38■■■■□ 3.25
CPSF1-214ENST00000622776 TRPC5Q9UL62 973 aaPredicted RBP35.38■■■■□ 3.25
CPSF1-214ENST00000622776 MYOM2P54296 1465 aa35.37■■■■□ 3.25
CPSF1-214ENST00000622776 YTHDC2Q9H6S0 1430 aaKnown RBP35.34■■■■□ 3.25
CPSF1-214ENST00000622776 KNDC1Q76NI1 1749 aa35.34■■■■□ 3.25
CPSF1-214ENST00000622776 ACIN1Q9UKV3 1341 aaKnown RBP35.33■■■■□ 3.25
CPSF1-214ENST00000622776 SIRT1Q96EB6 747 aa35.3■■■■□ 3.24
CPSF1-214ENST00000622776 C14orf93Q9H972 538 aaKnown RBP35.3■■■■□ 3.24
CPSF1-214ENST00000622776 ATRNO75882 1429 aa35.3■■■■□ 3.24
CPSF1-214ENST00000622776 FMN2Q9NZ56 1722 aa35.26■■■■□ 3.23
CPSF1-214ENST00000622776 ATAD2Q6PL18 1390 aa35.25■■■■□ 3.23
CPSF1-214ENST00000622776 CFAP70Q5T0N1 1121 aa35.24■■■■□ 3.23
CPSF1-214ENST00000622776 BCL9LQ86UU0 1499 aa35.23■■■■□ 3.23
CPSF1-214ENST00000622776 NRXN1Q9ULB1 1477 aa35.22■■■■□ 3.23
CPSF1-214ENST00000622776 SPATA31A3Q5VYP0 1347 aa35.22■■■■□ 3.23
CPSF1-214ENST00000622776 DHX57Q6P158 1386 aaKnown RBP35.22■■■■□ 3.23
CPSF1-214ENST00000622776 KRT28Q7Z3Y7 464 aa35.2■■■■□ 3.23
CPSF1-214ENST00000622776 MARF1Q9Y4F3 1742 aaKnown RBP35.2■■■■□ 3.23
CPSF1-214ENST00000622776 KIF1AQ12756 1690 aa35.19■■■■□ 3.22
CPSF1-214ENST00000622776 PHF8Q9UPP1 1060 aa35.16■■■■□ 3.22
CPSF1-214ENST00000622776 GJD4Q96KN9 370 aaPredicted RBP35.15■■■■□ 3.22
CPSF1-214ENST00000622776 PRAM1Q96QH2 718 aa35.14■■■■□ 3.22
CPSF1-214ENST00000622776 SAFB2Q14151 953 aaKnown RBP eCLIP35.13■■■■□ 3.21
CPSF1-214ENST00000622776 RAB3GAP2Q9H2M9 1393 aa35.13■■■■□ 3.21
CPSF1-214ENST00000622776 PSME1Q06323 249 aa35.11■■■■□ 3.21
CPSF1-214ENST00000622776 UNC5CLQ8IV45 518 aa35.11■■■■□ 3.21
CPSF1-214ENST00000622776 RGPD8O14715 1765 aaPredicted RBP35.1■■■■□ 3.21
CPSF1-214ENST00000622776 SLIT2O94813 1529 aa35.08■■■■□ 3.21
CPSF1-214ENST00000622776 POGKQ9P215 609 aa35.08■■■■□ 3.21
CPSF1-214ENST00000622776 TNS3Q68CZ2 1445 aa35.07■■■■□ 3.21
CPSF1-214ENST00000622776 TNKS1BP1Q9C0C2 1729 aaKnown RBP35.06■■■■□ 3.2
CPSF1-214ENST00000622776 DLC1Q96QB1 1528 aa35.06■■■■□ 3.2
CPSF1-214ENST00000622776 HAP1P54257 671 aaPredicted RBP35.04■■■■□ 3.2
CPSF1-214ENST00000622776 CABLES1Q8TDN4 633 aa35.04■■■■□ 3.2
CPSF1-214ENST00000622776 EP400Q96L91 3159 aa35.04■■■■□ 3.2
CPSF1-214ENST00000622776 USP32Q8NFA0 1604 aa35.03■■■■□ 3.2
CPSF1-214ENST00000622776 SBNO1A3KN83 1393 aa35.03■■■■□ 3.2
CPSF1-214ENST00000622776 RALGAPBQ86X10 1494 aa35.02■■■■□ 3.2
CPSF1-214ENST00000622776 CCDC125Q86Z20 511 aa35.01■■■■□ 3.2
CPSF1-214ENST00000622776 ANKARQ7Z5J8 1434 aa35■■■■□ 3.19
CPSF1-214ENST00000622776 LMOD2Q6P5Q4 547 aa35■■■■□ 3.19
CPSF1-214ENST00000622776 PLEKHG5O94827 1062 aa34.99■■■■□ 3.19
CPSF1-214ENST00000622776 PMFBP1Q8TBY8 1022 aa34.99■■■■□ 3.19
CPSF1-214ENST00000622776 TRAK1Q9UPV9 953 aa34.99■■■■□ 3.19
CPSF1-214ENST00000622776 ADGRB1O14514 1584 aa34.99■■■■□ 3.19
CPSF1-214ENST00000622776 GLI3P10071 1580 aa34.99■■■■□ 3.19
CPSF1-214ENST00000622776 ARHGEF10O15013 1369 aa34.98■■■■□ 3.19
CPSF1-214ENST00000622776 KDM2AQ9Y2K7 1162 aa34.97■■■■□ 3.19
CPSF1-214ENST00000622776 DCAF11Q8TEB1 546 aa34.95■■■■□ 3.19
CPSF1-214ENST00000622776 HIRIP3Q9BW71 556 aaPredicted RBP34.95■■■■□ 3.19
CPSF1-214ENST00000622776 ADGRB2O60241 1585 aa34.95■■■■□ 3.18
CPSF1-214ENST00000622776 SRCAPQ6ZRS2 3230 aa34.94■■■■□ 3.18
CPSF1-214ENST00000622776 VPS72Q15906 364 aa34.93■■■■□ 3.18
CPSF1-214ENST00000622776 MINK1Q8N4C8 1332 aaPredicted RBP34.92■■■■□ 3.18
CPSF1-214ENST00000622776 ZRANB1Q9UGI0 708 aa34.91■■■■□ 3.18
CPSF1-214ENST00000622776 STAC3Q96MF2 364 aa34.89■■■■□ 3.18
CPSF1-214ENST00000622776 EIF3AQ14152 1382 aaKnown RBP34.88■■■■□ 3.17
CPSF1-214ENST00000622776 PRR36Q9H6K5 1346 aa34.88■■■■□ 3.17
CPSF1-214ENST00000622776 SEPT12Q8IYM1 358 aa34.88■■■■□ 3.17
CPSF1-214ENST00000622776 ABCA3Q99758 1704 aa34.87■■■■□ 3.17
CPSF1-214ENST00000622776 FAM83GA6ND36 823 aa34.87■■■■□ 3.17
CPSF1-214ENST00000622776 CCDC9Q9Y3X0 531 aaKnown RBP34.87■■■■□ 3.17
CPSF1-214ENST00000622776 WASLO00401 505 aaPredicted RBP34.86■■■■□ 3.17
CPSF1-214ENST00000622776 NWD2Q9ULI1 1742 aa34.86■■■■□ 3.17
CPSF1-214ENST00000622776 GPRASP1Q5JY77 1395 aa34.86■■■■□ 3.17
CPSF1-214ENST00000622776 PLCH1Q4KWH8 1693 aa34.86■■■■□ 3.17
CPSF1-214ENST00000622776 BLMP54132 1417 aaPredicted RBP34.84■■■■□ 3.17
CPSF1-214ENST00000622776 ONECUT3O60422 494 aaPredicted RBP34.84■■■■□ 3.17
CPSF1-214ENST00000622776 HRCP23327 699 aa34.84■■■■□ 3.17
CPSF1-214ENST00000622776 BRWD3Q6RI45 1802 aa34.83■■■■□ 3.17
CPSF1-214ENST00000622776 TULP4Q9NRJ4 1543 aa34.82■■■■□ 3.16
CPSF1-214ENST00000622776 TRPM3Q9HCF6 1732 aaPredicted RBP34.82■■■■□ 3.16
CPSF1-214ENST00000622776 NGDNQ8NEJ9 315 aaKnown RBP34.78■■■■□ 3.16
CPSF1-214ENST00000622776 ALS2Q96Q42 1657 aa34.76■■■■□ 3.16
CPSF1-214ENST00000622776 KRT27Q7Z3Y8 459 aa34.76■■■■□ 3.16
CPSF1-214ENST00000622776 BTG4Q9NY30 223 aa34.76■■■■□ 3.16
CPSF1-214ENST00000622776 DEFB132Q7Z7B7 95 aa34.74■■■■□ 3.15
CPSF1-214ENST00000622776 SF3B2Q13435 895 aaKnown RBP34.73■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms