RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 VPS37DQ86XT2 251 aa11.46□□□□□ -0.57
GGA3-223ENST00000621870 AMER1Q5JTC6 1135 aaPredicted RBP11.46□□□□□ -0.57
GGA3-223ENST00000621870 HSP90B1P14625 803 aaKnown RBP11.46□□□□□ -0.58
GGA3-223ENST00000621870 RRP1P56182 461 aaKnown RBP11.46□□□□□ -0.58
GGA3-223ENST00000621870 DENND4BO75064 1496 aaPredicted RBP11.46□□□□□ -0.58
GGA3-223ENST00000621870 ZNF428Q96B54 188 aa11.45□□□□□ -0.58
GGA3-223ENST00000621870 FANCAO15360 1455 aa11.45□□□□□ -0.58
GGA3-223ENST00000621870 DDX19BQ9UMR2 479 aa11.45□□□□□ -0.58
GGA3-223ENST00000621870 ADAMTS2O95450 1211 aa11.44□□□□□ -0.58
GGA3-223ENST00000621870 G3BP1Q13283 466 aaKnown RBP eCLIP11.44□□□□□ -0.58
GGA3-223ENST00000621870 FBXW7Q969H0 707 aa11.44□□□□□ -0.58
GGA3-223ENST00000621870 PPP1R1BQ9UD71 204 aaPredicted RBP11.44□□□□□ -0.58
GGA3-223ENST00000621870 ADGRF5Q8IZF2 1346 aa11.44□□□□□ -0.58
GGA3-223ENST00000621870 PEG3Q9GZU2 1588 aa11.43□□□□□ -0.58
GGA3-223ENST00000621870 ABCC5O15440 1437 aa11.43□□□□□ -0.58
GGA3-223ENST00000621870 CDCA7LQ96GN5 454 aa11.43□□□□□ -0.58
GGA3-223ENST00000621870 FOXD4L1Q9NU39 408 aa11.43□□□□□ -0.58
GGA3-223ENST00000621870 IFIT2P09913 472 aaKnown RBP11.43□□□□□ -0.58
GGA3-223ENST00000621870 SF3B2Q13435 895 aaKnown RBP11.43□□□□□ -0.58
GGA3-223ENST00000621870 KIF16BQ96L93 1317 aa11.42□□□□□ -0.58
GGA3-223ENST00000621870 CNTLNQ9NXG0 1405 aa11.42□□□□□ -0.58
GGA3-223ENST00000621870 NEUROD6Q96NK8 337 aa11.42□□□□□ -0.58
GGA3-223ENST00000621870 CAMSAP2Q08AD1 1489 aa11.42□□□□□ -0.58
GGA3-223ENST00000621870 RAD21O60216 631 aa11.42□□□□□ -0.58
GGA3-223ENST00000621870 APPP05067 770 aa11.42□□□□□ -0.58
GGA3-223ENST00000621870 DIAPH3Q9NSV4 1193 aa11.42□□□□□ -0.58
GGA3-223ENST00000621870 SUPT6HQ7KZ85 1726 aaKnown RBP11.42□□□□□ -0.58
GGA3-223ENST00000621870 ROCK1Q13464 1354 aa11.41□□□□□ -0.58
GGA3-223ENST00000621870 ATAD2Q6PL18 1390 aa11.41□□□□□ -0.58
GGA3-223ENST00000621870 NCOA1Q15788 1441 aa11.41□□□□□ -0.58
GGA3-223ENST00000621870 CABP4P57796 275 aa11.41□□□□□ -0.58
GGA3-223ENST00000621870 PANK1Q8TE04 598 aa11.41□□□□□ -0.58
GGA3-223ENST00000621870 PPP6R1Q9UPN7 881 aa11.41□□□□□ -0.58
GGA3-223ENST00000621870 EXOSC9Q06265 439 aaKnown RBP11.41□□□□□ -0.58
GGA3-223ENST00000621870 DNTTIP2Q5QJE6 756 aaKnown RBP11.41□□□□□ -0.58
GGA3-223ENST00000621870 HDGFL1Q5TGJ6 251 aa11.41□□□□□ -0.58
GGA3-223ENST00000621870 TSR2Q969E8 191 aaKnown RBP11.41□□□□□ -0.58
GGA3-223ENST00000621870 PHF8Q9UPP1 1060 aa11.41□□□□□ -0.58
GGA3-223ENST00000621870 PCF11O94913 1555 aaKnown RBP11.41□□□□□ -0.58
GGA3-223ENST00000621870 AKNAQ7Z591 1439 aa11.41□□□□□ -0.58
GGA3-223ENST00000621870 CUL7Q14999 1698 aa11.4□□□□□ -0.58
GGA3-223ENST00000621870 UBTFL1P0CB47 393 aaPredicted RBP11.4□□□□□ -0.58
GGA3-223ENST00000621870 LNPKQ9C0E8 428 aa11.4□□□□□ -0.58
GGA3-223ENST00000621870 ASXL2Q76L83 1435 aa11.4□□□□□ -0.58
GGA3-223ENST00000621870 CENPQQ7L2Z9 268 aaPredicted RBP11.39□□□□□ -0.59
GGA3-223ENST00000621870 NOL10Q9BSC4 688 aaKnown RBP11.39□□□□□ -0.59
GGA3-223ENST00000621870 SMG6Q86US8 1419 aaKnown RBP11.39□□□□□ -0.59
GGA3-223ENST00000621870 BRD4O60885 1362 aaPredicted RBP11.39□□□□□ -0.59
GGA3-223ENST00000621870 HSPA2P54652 639 aa11.39□□□□□ -0.59
GGA3-223ENST00000621870 TWISTNBQ3B726 338 aaPredicted RBP11.39□□□□□ -0.59
GGA3-223ENST00000621870 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.39□□□□□ -0.59
GGA3-223ENST00000621870 CCDC30Q5VVM6 783 aa11.38□□□□□ -0.59
GGA3-223ENST00000621870 DHX29Q7Z478 1369 aaKnown RBP11.38□□□□□ -0.59
GGA3-223ENST00000621870 NGLY1Q96IV0 654 aa11.38□□□□□ -0.59
GGA3-223ENST00000621870 SPG7Q9UQ90 795 aa11.38□□□□□ -0.59
GGA3-223ENST00000621870 NME9Q86XW9 330 aa11.38□□□□□ -0.59
GGA3-223ENST00000621870 PTCD1O75127 700 aaKnown RBP11.38□□□□□ -0.59
GGA3-223ENST00000621870 LRRFIP1Q32MZ4 808 aaKnown RBP11.38□□□□□ -0.59
GGA3-223ENST00000621870 RASSF8Q8NHQ8 419 aa11.38□□□□□ -0.59
GGA3-223ENST00000621870 ATP10BO94823 1461 aa11.37□□□□□ -0.59
GGA3-223ENST00000621870 FOXD4L5Q5VV16 416 aaPredicted RBP11.37□□□□□ -0.59
GGA3-223ENST00000621870 FOXD4L4Q8WXT5 416 aaPredicted RBP11.37□□□□□ -0.59
GGA3-223ENST00000621870 VPS53Q5VIR6 699 aa11.37□□□□□ -0.59
GGA3-223ENST00000621870 SLC4A2P04920 1241 aa11.37□□□□□ -0.59
GGA3-223ENST00000621870 NCBP3Q53F19 620 aaKnown RBP11.37□□□□□ -0.59
GGA3-223ENST00000621870 KCNH5Q8NCM2 988 aa11.37□□□□□ -0.59
GGA3-223ENST00000621870 GZF1Q9H116 711 aaPredicted RBP11.36□□□□□ -0.59
GGA3-223ENST00000621870 WASLO00401 505 aaPredicted RBP11.36□□□□□ -0.59
GGA3-223ENST00000621870 MYL6BP14649 208 aa11.36□□□□□ -0.59
GGA3-223ENST00000621870 DMRT2Q9Y5R5 561 aa11.36□□□□□ -0.59
GGA3-223ENST00000621870 KIF14Q15058 1648 aa11.36□□□□□ -0.59
GGA3-223ENST00000621870 ST18O60284 1047 aa11.36□□□□□ -0.59
GGA3-223ENST00000621870 SURF6O75683 361 aaKnown RBP11.36□□□□□ -0.59
GGA3-223ENST00000621870 MARCH6O60337 910 aa11.35□□□□□ -0.59
GGA3-223ENST00000621870 USHBP1Q8N6Y0 703 aa11.35□□□□□ -0.59
GGA3-223ENST00000621870 TRIM34Q9BYJ4 488 aa11.35□□□□□ -0.59
GGA3-223ENST00000621870 NRDCO43847 1150 aa11.35□□□□□ -0.59
GGA3-223ENST00000621870 ANO2Q9NQ90 1003 aa11.35□□□□□ -0.59
GGA3-223ENST00000621870 HSP90AB4PQ58FF6 505 aa11.35□□□□□ -0.59
GGA3-223ENST00000621870 SAMD1Q6SPF0 538 aaPredicted RBP11.35□□□□□ -0.59
GGA3-223ENST00000621870 RUFY2Q8WXA3 655 aa11.35□□□□□ -0.59
GGA3-223ENST00000621870 THUMPD2Q9BTF0 503 aaKnown RBP11.35□□□□□ -0.59
GGA3-223ENST00000621870 KAT6BQ8WYB5 2073 aa11.34□□□□□ -0.59
GGA3-223ENST00000621870 FOXD4L6Q3SYB3 417 aaPredicted RBP11.34□□□□□ -0.59
GGA3-223ENST00000621870 FOXD4L3Q6VB84 417 aaPredicted RBP11.34□□□□□ -0.59
GGA3-223ENST00000621870 KIF6Q6ZMV9 814 aa11.34□□□□□ -0.59
GGA3-223ENST00000621870 CADPS2Q86UW7 1296 aa11.34□□□□□ -0.59
GGA3-223ENST00000621870 GBP4Q96PP9 640 aa11.34□□□□□ -0.59
GGA3-223ENST00000621870 GNAI3P08754 354 aa11.34□□□□□ -0.59
GGA3-223ENST00000621870 AMOTL1Q8IY63 956 aa11.34□□□□□ -0.59
GGA3-223ENST00000621870 NSD3Q9BZ95 1437 aa11.34□□□□□ -0.59
GGA3-223ENST00000621870 UBAP1LF5GYI3 381 aa11.33□□□□□ -0.6
GGA3-223ENST00000621870 DEKP35659 375 aaKnown RBP11.33□□□□□ -0.6
GGA3-223ENST00000621870 EMILIN1Q9Y6C2 1016 aa11.33□□□□□ -0.6
GGA3-223ENST00000621870 HTATSF1O43719 755 aaKnown RBP11.33□□□□□ -0.6
GGA3-223ENST00000621870 ZKSCAN1P17029 563 aaPredicted RBP11.33□□□□□ -0.6
GGA3-223ENST00000621870 CCDC184Q52MB2 194 aa11.33□□□□□ -0.6
GGA3-223ENST00000621870 CLASRPQ8N2M8 674 aaKnown RBP11.33□□□□□ -0.6
GGA3-223ENST00000621870 GPATCH8Q9UKJ3 1502 aaKnown RBP11.33□□□□□ -0.6
GGA3-223ENST00000621870 AKAP17AQ02040 695 aaKnown RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms