RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 MYOM1P52179 1685 aa13.25□□□□□ -0.29
VTA1-205ENST00000620996 MYO3AQ8NEV4 1616 aa13.24□□□□□ -0.29
VTA1-205ENST00000620996 ADAMTS8Q9UP79 889 aa13.24□□□□□ -0.29
VTA1-205ENST00000620996 LRPPRCP42704 1394 aaKnown RBP13.24□□□□□ -0.29
VTA1-205ENST00000620996 TXNDC2Q86VQ3 553 aa13.24□□□□□ -0.29
VTA1-205ENST00000620996 ALKQ9UM73 1620 aa13.24□□□□□ -0.29
VTA1-205ENST00000620996 TSHZ2Q9NRE2 1034 aa13.23□□□□□ -0.29
VTA1-205ENST00000620996 CDK19Q9BWU1 502 aa13.23□□□□□ -0.29
VTA1-205ENST00000620996 NUDCQ9Y266 331 aa13.23□□□□□ -0.29
VTA1-205ENST00000620996 ARHGEF28Q8N1W1 1705 aaKnown RBP13.22□□□□□ -0.29
VTA1-205ENST00000620996 CCDC146Q8IYE0 955 aa13.22□□□□□ -0.29
VTA1-205ENST00000620996 CGNL1Q0VF96 1302 aa13.21□□□□□ -0.29
VTA1-205ENST00000620996 TULP4Q9NRJ4 1543 aa13.21□□□□□ -0.29
VTA1-205ENST00000620996 PLEKHH1Q9ULM0 1364 aa13.2□□□□□ -0.3
VTA1-205ENST00000620996 SLC26A8Q96RN1 970 aa13.2□□□□□ -0.3
VTA1-205ENST00000620996 EID1Q9Y6B2 187 aa13.2□□□□□ -0.3
VTA1-205ENST00000620996 PTPRMP28827 1452 aa13.19□□□□□ -0.3
VTA1-205ENST00000620996 METP08581 1390 aa13.19□□□□□ -0.3
VTA1-205ENST00000620996 CCDC136Q96JN2 1154 aa13.19□□□□□ -0.3
VTA1-205ENST00000620996 TERF2IPQ9NYB0 399 aa13.19□□□□□ -0.3
VTA1-205ENST00000620996 CABP1Q9NZU7 370 aa13.19□□□□□ -0.3
VTA1-205ENST00000620996 TMEM2Q9UHN6 1383 aa13.18□□□□□ -0.3
VTA1-205ENST00000620996 HDGFL2Q7Z4V5 671 aaPredicted RBP13.18□□□□□ -0.3
VTA1-205ENST00000620996 GGNBP2Q9H3C7 697 aa13.18□□□□□ -0.3
VTA1-205ENST00000620996 NUTM2FA1L443 756 aa13.18□□□□□ -0.3
VTA1-205ENST00000620996 LTKP29376 864 aa13.17□□□□□ -0.3
VTA1-205ENST00000620996 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.17□□□□□ -0.3
VTA1-205ENST00000620996 ANKRD36BQ8N2N9 1353 aa13.17□□□□□ -0.3
VTA1-205ENST00000620996 NPC1L1Q9UHC9 1359 aa13.17□□□□□ -0.3
VTA1-205ENST00000620996 SMG6Q86US8 1419 aaKnown RBP13.17□□□□□ -0.3
VTA1-205ENST00000620996 CDCA7LQ96GN5 454 aa13.17□□□□□ -0.3
VTA1-205ENST00000620996 ATAD2Q6PL18 1390 aa13.17□□□□□ -0.3
VTA1-205ENST00000620996 A0A1W2PP64 1363 aa13.16□□□□□ -0.3
VTA1-205ENST00000620996 MTHFSP49914 203 aa13.15□□□□□ -0.3
VTA1-205ENST00000620996 CFAP53Q96M91 514 aa13.14□□□□□ -0.31
VTA1-205ENST00000620996 PUS7Q96PZ0 661 aaKnown RBP13.14□□□□□ -0.31
VTA1-205ENST00000620996 NEUROD2Q15784 382 aa13.14□□□□□ -0.31
VTA1-205ENST00000620996 PPM1GO15355 546 aaPredicted RBP13.13□□□□□ -0.31
VTA1-205ENST00000620996 APAF1O14727 1248 aa13.13□□□□□ -0.31
VTA1-205ENST00000620996 ABCC11Q96J66 1382 aa13.13□□□□□ -0.31
VTA1-205ENST00000620996 BLMP54132 1417 aaPredicted RBP13.13□□□□□ -0.31
VTA1-205ENST00000620996 FER1L4A9Z1Z3 1794 aa13.12□□□□□ -0.31
VTA1-205ENST00000620996 THEMISQ8N1K5 641 aaPredicted RBP13.12□□□□□ -0.31
VTA1-205ENST00000620996 NCKAP5LQ9HCH0 1330 aa13.12□□□□□ -0.31
VTA1-205ENST00000620996 WASLO00401 505 aaPredicted RBP13.12□□□□□ -0.31
VTA1-205ENST00000620996 NLRP1Q9C000 1473 aa13.11□□□□□ -0.31
VTA1-205ENST00000620996 UBR1Q8IWV7 1749 aa13.11□□□□□ -0.31
VTA1-205ENST00000620996 DNAJC5Q9H3Z4 198 aa13.11□□□□□ -0.31
VTA1-205ENST00000620996 U2SURPO15042 1029 aaKnown RBP13.1□□□□□ -0.31
VTA1-205ENST00000620996 PDE3BQ13370 1112 aa13.1□□□□□ -0.31
VTA1-205ENST00000620996 NINLQ9Y2I6 1382 aa13.1□□□□□ -0.31
VTA1-205ENST00000620996 RCAN3Q9UKA8 241 aa13.1□□□□□ -0.31
VTA1-205ENST00000620996 C3P01024 1663 aa13.1□□□□□ -0.31
VTA1-205ENST00000620996 B4GALNT3Q6L9W6 998 aa13.1□□□□□ -0.31
VTA1-205ENST00000620996 NUDT16Q96DE0 195 aaKnown RBP13.1□□□□□ -0.31
VTA1-205ENST00000620996 RRP7AQ9Y3A4 280 aaKnown RBP13.1□□□□□ -0.31
VTA1-205ENST00000620996 U2AF1L5P0DN76 240 aaPredicted RBP13.09□□□□□ -0.31
VTA1-205ENST00000620996 U2AF1Q01081 240 aaKnown RBP eCLIP13.09□□□□□ -0.31
VTA1-205ENST00000620996 NRXN3Q9Y4C0 1643 aa13.09□□□□□ -0.31
VTA1-205ENST00000620996 FYB1O15117 783 aa13.08□□□□□ -0.31
VTA1-205ENST00000620996 ROBO2Q9HCK4 1378 aa13.08□□□□□ -0.32
VTA1-205ENST00000620996 AMOTL2Q9Y2J4 779 aa13.08□□□□□ -0.32
VTA1-205ENST00000620996 PLEKHG1Q9ULL1 1385 aa13.08□□□□□ -0.32
VTA1-205ENST00000620996 PPP4R2Q9NY27 417 aa13.08□□□□□ -0.32
VTA1-205ENST00000620996 PPIP5K1Q6PFW1 1433 aa13.08□□□□□ -0.32
VTA1-205ENST00000620996 FBLN1P23142 703 aa13.07□□□□□ -0.32
VTA1-205ENST00000620996 NSD2O96028 1365 aa13.07□□□□□ -0.32
VTA1-205ENST00000620996 DLC1Q96QB1 1528 aa13.07□□□□□ -0.32
VTA1-205ENST00000620996 ADAMTS13Q76LX8 1427 aa13.07□□□□□ -0.32
VTA1-205ENST00000620996 GOLGA2Q08379 1002 aa13.07□□□□□ -0.32
VTA1-205ENST00000620996 POLR3AO14802 1390 aaPredicted RBP13.06□□□□□ -0.32
VTA1-205ENST00000620996 CCDC61Q9Y6R9 512 aa13.05□□□□□ -0.32
VTA1-205ENST00000620996 NME9Q86XW9 330 aa13.05□□□□□ -0.32
VTA1-205ENST00000620996 SETD1AO15047 1707 aaKnown RBP13.05□□□□□ -0.32
VTA1-205ENST00000620996 PLIN1O60240 522 aa13.05□□□□□ -0.32
VTA1-205ENST00000620996 RIMS1Q86UR5 1692 aaKnown RBP13.05□□□□□ -0.32
VTA1-205ENST00000620996 SOX12O15370 315 aa13.04□□□□□ -0.32
VTA1-205ENST00000620996 RRP1P56182 461 aaKnown RBP13.04□□□□□ -0.32
VTA1-205ENST00000620996 ZRANB1Q9UGI0 708 aa13.04□□□□□ -0.32
VTA1-205ENST00000620996 CD163L1Q9NR16 1453 aa13.04□□□□□ -0.32
VTA1-205ENST00000620996 INSRP06213 1382 aa13.03□□□□□ -0.32
VTA1-205ENST00000620996 RBM33Q96EV2 1170 aaKnown RBP13.03□□□□□ -0.32
VTA1-205ENST00000620996 FAM135BQ49AJ0 1406 aa13.03□□□□□ -0.32
VTA1-205ENST00000620996 PMFBP1Q8TBY8 1022 aa13.03□□□□□ -0.32
VTA1-205ENST00000620996 RUNDC1Q96C34 613 aa13.03□□□□□ -0.32
VTA1-205ENST00000620996 ERICH6BQ5W0A0 696 aa13.02□□□□□ -0.33
VTA1-205ENST00000620996 TCP11L2Q8N4U5 519 aa13.02□□□□□ -0.33
VTA1-205ENST00000620996 TBX22Q9Y458 520 aa13.01□□□□□ -0.33
VTA1-205ENST00000620996 PRR36Q9H6K5 1346 aa13.01□□□□□ -0.33
VTA1-205ENST00000620996 ANKLE2Q86XL3 938 aa13.01□□□□□ -0.33
VTA1-205ENST00000620996 COG3Q96JB2 828 aa13.01□□□□□ -0.33
VTA1-205ENST00000620996 PTPRUQ92729 1446 aa13.01□□□□□ -0.33
VTA1-205ENST00000620996 USP32Q8NFA0 1604 aa13.01□□□□□ -0.33
VTA1-205ENST00000620996 SIRT1Q96EB6 747 aa13.01□□□□□ -0.33
VTA1-205ENST00000620996 TECPR2O15040 1411 aa13□□□□□ -0.33
VTA1-205ENST00000620996 MAPK8IP3Q9UPT6 1336 aa13□□□□□ -0.33
VTA1-205ENST00000620996 DIAPH1O60610 1272 aaKnown RBP13□□□□□ -0.33
VTA1-205ENST00000620996 KCNA6P17658 529 aa13□□□□□ -0.33
VTA1-205ENST00000620996 ZBTB4Q9P1Z0 1013 aaPredicted RBP13□□□□□ -0.33
VTA1-205ENST00000620996 C14orf37Q86TY3 774 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 128.7 ms