RNA–Protein interactions for RNA: ENST00000614198.4

GGA3-221, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 3,438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-221ENST00000614198 YTHDC2Q9H6S0 1430 aaKnown RBP13.38□□□□□ -0.27
GGA3-221ENST00000614198 TNNT2P45379 298 aaPredicted RBP13.37□□□□□ -0.27
GGA3-221ENST00000614198 HNRNPUQ00839 825 aaKnown RBP eCLIP13.37□□□□□ -0.27
GGA3-221ENST00000614198 ARHGEF28Q8N1W1 1705 aaKnown RBP13.37□□□□□ -0.27
GGA3-221ENST00000614198 NRXN3Q9Y4C0 1643 aa13.37□□□□□ -0.27
GGA3-221ENST00000614198 SRPK2P78362 688 aaKnown RBP13.36□□□□□ -0.27
GGA3-221ENST00000614198 SETBP1Q9Y6X0 1596 aa13.36□□□□□ -0.27
GGA3-221ENST00000614198 MYOM1P52179 1685 aa13.35□□□□□ -0.27
GGA3-221ENST00000614198 TULP4Q9NRJ4 1543 aa13.33□□□□□ -0.27
GGA3-221ENST00000614198 KNSTRNQ9Y448 316 aa13.32□□□□□ -0.28
GGA3-221ENST00000614198 SETD1AO15047 1707 aaKnown RBP13.32□□□□□ -0.28
GGA3-221ENST00000614198 CDK19Q9BWU1 502 aa13.32□□□□□ -0.28
GGA3-221ENST00000614198 AMER1Q5JTC6 1135 aaPredicted RBP13.31□□□□□ -0.28
GGA3-221ENST00000614198 ADAMTS13Q76LX8 1427 aa13.31□□□□□ -0.28
GGA3-221ENST00000614198 KDM5AP29375 1690 aaKnown RBP13.31□□□□□ -0.28
GGA3-221ENST00000614198 FBLN1P23142 703 aa13.31□□□□□ -0.28
GGA3-221ENST00000614198 NOP58Q9Y2X3 529 aaKnown RBP13.31□□□□□ -0.28
GGA3-221ENST00000614198 MYO3AQ8NEV4 1616 aa13.31□□□□□ -0.28
GGA3-221ENST00000614198 EIF5BO60841 1220 aaKnown RBP13.3□□□□□ -0.28
GGA3-221ENST00000614198 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.3□□□□□ -0.28
GGA3-221ENST00000614198 ROBO2Q9HCK4 1378 aa13.3□□□□□ -0.28
GGA3-221ENST00000614198 EID1Q9Y6B2 187 aa13.3□□□□□ -0.28
GGA3-221ENST00000614198 ADAMTSL3P82987 1691 aa13.3□□□□□ -0.28
GGA3-221ENST00000614198 HSPA2P54652 639 aa13.29□□□□□ -0.28
GGA3-221ENST00000614198 THEMISQ8N1K5 641 aaPredicted RBP13.29□□□□□ -0.28
GGA3-221ENST00000614198 PTPRUQ92729 1446 aa13.29□□□□□ -0.28
GGA3-221ENST00000614198 EVC2Q86UK5 1308 aa13.29□□□□□ -0.28
GGA3-221ENST00000614198 KTN1Q86UP2 1357 aaKnown RBP13.29□□□□□ -0.28
GGA3-221ENST00000614198 PPP4R2Q9NY27 417 aa13.29□□□□□ -0.28
GGA3-221ENST00000614198 CABP1Q9NZU7 370 aa13.29□□□□□ -0.28
GGA3-221ENST00000614198 NLRP1Q9C000 1473 aa13.28□□□□□ -0.28
GGA3-221ENST00000614198 AMOTL2Q9Y2J4 779 aa13.28□□□□□ -0.28
GGA3-221ENST00000614198 CDCA8Q53HL2 280 aa13.27□□□□□ -0.28
GGA3-221ENST00000614198 NSD3Q9BZ95 1437 aa13.26□□□□□ -0.29
GGA3-221ENST00000614198 PARD3Q8TEW0 1356 aa13.26□□□□□ -0.29
GGA3-221ENST00000614198 MYBBP1AQ9BQG0 1328 aaKnown RBP13.26□□□□□ -0.29
GGA3-221ENST00000614198 CEP170BQ9Y4F5 1589 aaPredicted RBP13.26□□□□□ -0.29
GGA3-221ENST00000614198 LRPPRCP42704 1394 aaKnown RBP13.26□□□□□ -0.29
GGA3-221ENST00000614198 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.26□□□□□ -0.29
GGA3-221ENST00000614198 PNISRQ8TF01 805 aaKnown RBP13.26□□□□□ -0.29
GGA3-221ENST00000614198 KCNA6P17658 529 aa13.25□□□□□ -0.29
GGA3-221ENST00000614198 HDGFP51858 240 aaKnown RBP13.25□□□□□ -0.29
GGA3-221ENST00000614198 RTL5Q5HYW3 569 aaPredicted RBP13.25□□□□□ -0.29
GGA3-221ENST00000614198 KDM4FA0A1W2PPD8 638 aa13.25□□□□□ -0.29
GGA3-221ENST00000614198 GGNBP2Q9H3C7 697 aa13.25□□□□□ -0.29
GGA3-221ENST00000614198 SBNO2Q9Y2G9 1366 aa13.24□□□□□ -0.29
GGA3-221ENST00000614198 PPP2R1AP30153 589 aa13.24□□□□□ -0.29
GGA3-221ENST00000614198 B4GALNT3Q6L9W6 998 aa13.24□□□□□ -0.29
GGA3-221ENST00000614198 PLEKHG1Q9ULL1 1385 aa13.24□□□□□ -0.29
GGA3-221ENST00000614198 ZRANB1Q9UGI0 708 aa13.24□□□□□ -0.29
GGA3-221ENST00000614198 A0A1W2PP64 1363 aa13.23□□□□□ -0.29
GGA3-221ENST00000614198 UBE2Q2Q8WVN8 375 aa13.23□□□□□ -0.29
GGA3-221ENST00000614198 PAK3O75914 559 aaPredicted RBP13.23□□□□□ -0.29
GGA3-221ENST00000614198 RALBP1Q15311 655 aa13.23□□□□□ -0.29
GGA3-221ENST00000614198 IL27Q8NEV9 243 aa13.23□□□□□ -0.29
GGA3-221ENST00000614198 ABCC11Q96J66 1382 aa13.23□□□□□ -0.29
GGA3-221ENST00000614198 PRR36Q9H6K5 1346 aa13.22□□□□□ -0.29
GGA3-221ENST00000614198 ARHGAP23Q9P227 1491 aa13.22□□□□□ -0.29
GGA3-221ENST00000614198 SLIT1O75093 1534 aa13.21□□□□□ -0.29
GGA3-221ENST00000614198 WASLO00401 505 aaPredicted RBP13.21□□□□□ -0.29
GGA3-221ENST00000614198 ANKLE2Q86XL3 938 aa13.21□□□□□ -0.3
GGA3-221ENST00000614198 PMFBP1Q8TBY8 1022 aa13.21□□□□□ -0.3
GGA3-221ENST00000614198 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.21□□□□□ -0.3
GGA3-221ENST00000614198 NLRP13Q86W25 1043 aa13.2□□□□□ -0.3
GGA3-221ENST00000614198 NUDT16Q96DE0 195 aaKnown RBP13.2□□□□□ -0.3
GGA3-221ENST00000614198 CD163L1Q9NR16 1453 aa13.2□□□□□ -0.3
GGA3-221ENST00000614198 PLEKHG5O94827 1062 aa13.19□□□□□ -0.3
GGA3-221ENST00000614198 MED14O60244 1454 aa13.19□□□□□ -0.3
GGA3-221ENST00000614198 CCDC146Q8IYE0 955 aa13.19□□□□□ -0.3
GGA3-221ENST00000614198 ADAMTS8Q9UP79 889 aa13.19□□□□□ -0.3
GGA3-221ENST00000614198 MORC1Q86VD1 984 aa13.18□□□□□ -0.3
GGA3-221ENST00000614198 TBX22Q9Y458 520 aa13.17□□□□□ -0.3
GGA3-221ENST00000614198 SOX12O15370 315 aa13.17□□□□□ -0.3
GGA3-221ENST00000614198 SETD1BQ9UPS6 1966 aaKnown RBP13.17□□□□□ -0.3
GGA3-221ENST00000614198 FYB1O15117 783 aa13.17□□□□□ -0.3
GGA3-221ENST00000614198 PPIP5K1Q6PFW1 1433 aa13.16□□□□□ -0.3
GGA3-221ENST00000614198 NME9Q86XW9 330 aa13.16□□□□□ -0.3
GGA3-221ENST00000614198 BRD4O60885 1362 aaPredicted RBP13.16□□□□□ -0.3
GGA3-221ENST00000614198 ANKRD36BQ8N2N9 1353 aa13.16□□□□□ -0.3
GGA3-221ENST00000614198 PPM1GO15355 546 aaPredicted RBP13.15□□□□□ -0.3
GGA3-221ENST00000614198 RGPD8O14715 1765 aaPredicted RBP13.15□□□□□ -0.3
GGA3-221ENST00000614198 MTHFSP49914 203 aa13.14□□□□□ -0.31
GGA3-221ENST00000614198 IPO9Q96P70 1041 aaKnown RBP13.14□□□□□ -0.31
GGA3-221ENST00000614198 NUTM2GQ5VZR2 741 aa13.14□□□□□ -0.31
GGA3-221ENST00000614198 NPM2Q86SE8 214 aaKnown RBP13.14□□□□□ -0.31
GGA3-221ENST00000614198 DLC1Q96QB1 1528 aa13.13□□□□□ -0.31
GGA3-221ENST00000614198 CGNL1Q0VF96 1302 aa13.13□□□□□ -0.31
GGA3-221ENST00000614198 SLC24A1O60721 1099 aa13.13□□□□□ -0.31
GGA3-221ENST00000614198 CPS1P31327 1500 aa13.12□□□□□ -0.31
GGA3-221ENST00000614198 TECPR2O15040 1411 aa13.12□□□□□ -0.31
GGA3-221ENST00000614198 ANP32AP39687 249 aaKnown RBP13.12□□□□□ -0.31
GGA3-221ENST00000614198 CDCA7LQ96GN5 454 aa13.12□□□□□ -0.31
GGA3-221ENST00000614198 TERF2IPQ9NYB0 399 aa13.12□□□□□ -0.31
GGA3-221ENST00000614198 CCDC61Q9Y6R9 512 aa13.12□□□□□ -0.31
GGA3-221ENST00000614198 ATAD2Q6PL18 1390 aa13.12□□□□□ -0.31
GGA3-221ENST00000614198 C14orf37Q86TY3 774 aa13.11□□□□□ -0.31
GGA3-221ENST00000614198 XPCQ01831 940 aaPredicted RBP13.11□□□□□ -0.31
GGA3-221ENST00000614198 HDGFL2Q7Z4V5 671 aaPredicted RBP13.11□□□□□ -0.31
GGA3-221ENST00000614198 ACEP12821 1306 aa13.11□□□□□ -0.31
GGA3-221ENST00000614198 FAM135BQ49AJ0 1406 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms