RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 MAST1Q9Y2H9 1570 aa15.07■□□□□ 0
TPM3-223ENST00000611659 DDX11L8A8MPP1 907 aa15.06■□□□□ 0
TPM3-223ENST00000611659 DZIP1LQ8IYY4 767 aaKnown RBP15.06■□□□□ 0
TPM3-223ENST00000611659 PKNOX2Q96KN3 472 aa15.06■□□□□ 0
TPM3-223ENST00000611659 DUOX2Q9NRD8 1548 aa15.06■□□□□ 0
TPM3-223ENST00000611659 ZKSCAN2Q63HK3 967 aa15.06■□□□□ 0
TPM3-223ENST00000611659 POLR3AO14802 1390 aaPredicted RBP15.06■□□□□ 0
TPM3-223ENST00000611659 ESPNB1AK53 854 aa15.06■□□□□ 0
TPM3-223ENST00000611659 ITPRIPQ8IWB1 547 aa15.06■□□□□ 0
TPM3-223ENST00000611659 MYOM1P52179 1685 aa15.05■□□□□ 0
TPM3-223ENST00000611659 WDR63Q8IWG1 891 aa15.05■□□□□ -0
TPM3-223ENST00000611659 SMC4Q9NTJ3 1288 aa15.05■□□□□ -0
TPM3-223ENST00000611659 SCAPERQ9BY12 1400 aa15.04■□□□□ -0
TPM3-223ENST00000611659 MTHFSP49914 203 aa15.04■□□□□ -0
TPM3-223ENST00000611659 TSR2Q969E8 191 aaKnown RBP15.04■□□□□ -0
TPM3-223ENST00000611659 FOXD4L1Q9NU39 408 aa15.04■□□□□ -0
TPM3-223ENST00000611659 PLXNC1O60486 1568 aa15.04■□□□□ -0
TPM3-223ENST00000611659 SLC12A5Q9H2X9 1139 aa15.03■□□□□ -0
TPM3-223ENST00000611659 TTC37Q6PGP7 1564 aa15.03■□□□□ -0
TPM3-223ENST00000611659 KDM5AP29375 1690 aaKnown RBP15.03■□□□□ -0
TPM3-223ENST00000611659 U2AF1L5P0DN76 240 aaPredicted RBP15.03■□□□□ -0
TPM3-223ENST00000611659 U2AF1Q01081 240 aaKnown RBP eCLIP15.03■□□□□ -07e-10■■□□□ 13
TPM3-223ENST00000611659 ERBB4Q15303 1308 aa15.03■□□□□ -0
TPM3-223ENST00000611659 ERVK-7P63135 1459 aa15.03■□□□□ -0
TPM3-223ENST00000611659 ZMYM3Q14202 1370 aa15.03■□□□□ -0
TPM3-223ENST00000611659 HSP90AB1P08238 724 aaKnown RBP15.03■□□□□ -0
TPM3-223ENST00000611659 NSD3Q9BZ95 1437 aa15.03■□□□□ -0
TPM3-223ENST00000611659 ADGRF5Q8IZF2 1346 aa15.02■□□□□ -0
TPM3-223ENST00000611659 EFCAB2Q5VUJ9 269 aa15.02□□□□□ -0.01
TPM3-223ENST00000611659 CFAP53Q96M91 514 aa15.02□□□□□ -0.01
TPM3-223ENST00000611659 STAC3Q96MF2 364 aa15.01□□□□□ -0.01
TPM3-223ENST00000611659 RRP9O43818 475 aaKnown RBP15.01□□□□□ -0.01
TPM3-223ENST00000611659 SLC24A1O60721 1099 aa15.01□□□□□ -0.01
TPM3-223ENST00000611659 TNPO1Q92973 898 aaKnown RBP15.01□□□□□ -0.01
TPM3-223ENST00000611659 CHGAP10645 457 aaKnown RBP15.01□□□□□ -0.01
TPM3-223ENST00000611659 ZMYND15Q9H091 742 aa15.01□□□□□ -0.01
TPM3-223ENST00000611659 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.01□□□□□ -0.013e-7■□□□□ 8.5
TPM3-223ENST00000611659 TRAK1Q9UPV9 953 aa15□□□□□ -0.01
TPM3-223ENST00000611659 RTEL1-TNFRSF6BF6WH68 1400 aa15□□□□□ -0.01
TPM3-223ENST00000611659 ERCC6L2Q5T890 1561 aa15□□□□□ -0.01
TPM3-223ENST00000611659 GAS2L3Q86XJ1 694 aa15□□□□□ -0.01
TPM3-223ENST00000611659 TRIM27P14373 513 aa14.99□□□□□ -0.01
TPM3-223ENST00000611659 ZNF692Q9BU19 519 aaPredicted RBP14.99□□□□□ -0.01
TPM3-223ENST00000611659 SPAG9O60271 1321 aaKnown RBP14.99□□□□□ -0.01
TPM3-223ENST00000611659 EXOSC9Q06265 439 aaKnown RBP14.99□□□□□ -0.01
TPM3-223ENST00000611659 LNPKQ9C0E8 428 aa14.99□□□□□ -0.01
TPM3-223ENST00000611659 GBP4Q96PP9 640 aa14.99□□□□□ -0.01
TPM3-223ENST00000611659 PHF23Q9BUL5 403 aaPredicted RBP14.99□□□□□ -0.01
TPM3-223ENST00000611659 KIF3BO15066 747 aa14.98□□□□□ -0.01
TPM3-223ENST00000611659 DDX19BQ9UMR2 479 aa14.98□□□□□ -0.01
TPM3-223ENST00000611659 TRAPPC8Q9Y2L5 1435 aa14.97□□□□□ -0.01
TPM3-223ENST00000611659 CEP152O94986 1710 aa14.97□□□□□ -0.01
TPM3-223ENST00000611659 U2SURPO15042 1029 aaKnown RBP14.97□□□□□ -0.01
TPM3-223ENST00000611659 SSH1Q8WYL5 1049 aa14.97□□□□□ -0.01
TPM3-223ENST00000611659 NOB1Q9ULX3 412 aaKnown RBP14.97□□□□□ -0.01
TPM3-223ENST00000611659 SPHKAPQ2M3C7 1700 aa14.96□□□□□ -0.01
TPM3-223ENST00000611659 HDAC1Q13547 482 aaPredicted RBP14.96□□□□□ -0.01
TPM3-223ENST00000611659 TRPM2O94759 1503 aa14.96□□□□□ -0.01
TPM3-223ENST00000611659 CCDC27Q2M243 656 aa14.96□□□□□ -0.02
TPM3-223ENST00000611659 CLTCL1P53675 1640 aa14.96□□□□□ -0.02
TPM3-223ENST00000611659 ATF7IPQ6VMQ6 1270 aa14.95□□□□□ -0.02
TPM3-223ENST00000611659 TMEM57Q8N5G2 664 aa14.95□□□□□ -0.02
TPM3-223ENST00000611659 ISY1Q9ULR0 285 aaKnown RBP14.95□□□□□ -0.02
TPM3-223ENST00000611659 IQSEC2Q5JU85 1478 aa14.94□□□□□ -0.02
TPM3-223ENST00000611659 SMC5Q8IY18 1101 aa14.93□□□□□ -0.02
TPM3-223ENST00000611659 KANK1Q14678 1352 aa14.93□□□□□ -0.02
TPM3-223ENST00000611659 DDIT3P35638 169 aa14.92□□□□□ -0.02
TPM3-223ENST00000611659 RBM25P49756 843 aaKnown RBP14.92□□□□□ -0.02
TPM3-223ENST00000611659 TMEM132EQ6IEE7 984 aa14.92□□□□□ -0.02
TPM3-223ENST00000611659 PTPRTO14522 1441 aa14.92□□□□□ -0.02
TPM3-223ENST00000611659 RAB3GAP1Q15042 981 aa14.92□□□□□ -0.02
TPM3-223ENST00000611659 SKOR2Q2VWA4 1001 aaPredicted RBP14.92□□□□□ -0.02
TPM3-223ENST00000611659 ANP32BQ92688 251 aaKnown RBP14.92□□□□□ -0.02
TPM3-223ENST00000611659 CD2BP2O95400 341 aaKnown RBP14.92□□□□□ -0.02
TPM3-223ENST00000611659 NUTM2DQ5VT03 806 aaPredicted RBP14.92□□□□□ -0.02
TPM3-223ENST00000611659 SNX21Q969T3 373 aa14.92□□□□□ -0.02
TPM3-223ENST00000611659 RBM42Q9BTD8 480 aaKnown RBP14.91□□□□□ -0.02
TPM3-223ENST00000611659 SHPRHQ149N8 1683 aa14.91□□□□□ -0.02
TPM3-223ENST00000611659 UGGT1Q9NYU2 1555 aa14.91□□□□□ -0.02
TPM3-223ENST00000611659 NASPP49321 788 aaPredicted RBP14.9□□□□□ -0.02
TPM3-223ENST00000611659 ANKRD45Q5TZF3 282 aa14.9□□□□□ -0.02
TPM3-223ENST00000611659 CIZ1Q9ULV3 898 aaPredicted RBP14.9□□□□□ -0.02
TPM3-223ENST00000611659 SSFA2P28290 1259 aa14.9□□□□□ -0.02
TPM3-223ENST00000611659 NUCB1Q02818 461 aa14.9□□□□□ -0.02
TPM3-223ENST00000611659 KIAA1211Q6ZU35 1233 aa14.9□□□□□ -0.02
TPM3-223ENST00000611659 CHD1LQ86WJ1 897 aa14.9□□□□□ -0.02
TPM3-223ENST00000611659 GOLGA6L22H0YM25 854 aa14.9□□□□□ -0.02
TPM3-223ENST00000611659 ZBTB40Q9NUA8 1239 aa14.9□□□□□ -0.02
TPM3-223ENST00000611659 DDX49Q9Y6V7 483 aaKnown RBP14.9□□□□□ -0.02
TPM3-223ENST00000611659 PLCH2O75038 1416 aa14.89□□□□□ -0.03
TPM3-223ENST00000611659 NCOA3Q9Y6Q9 1424 aa14.89□□□□□ -0.03
TPM3-223ENST00000611659 ZNF518AQ6AHZ1 1483 aa14.89□□□□□ -0.03
TPM3-223ENST00000611659 NCLP19338 710 aaKnown RBP14.89□□□□□ -0.03
TPM3-223ENST00000611659 CT47B1P0C2W7 299 aaPredicted RBP14.88□□□□□ -0.03
TPM3-223ENST00000611659 TMPOP42166 694 aaKnown RBP14.88□□□□□ -0.03
TPM3-223ENST00000611659 C1orf115Q9H7X2 142 aa14.88□□□□□ -0.03
TPM3-223ENST00000611659 K7ELQ4 463 aaPredicted RBP14.88□□□□□ -0.03
TPM3-223ENST00000611659 TPM2P07951 284 aa14.88□□□□□ -0.03
TPM3-223ENST00000611659 SAFB2Q14151 953 aaKnown RBP eCLIP14.88□□□□□ -0.03
TPM3-223ENST00000611659 IPO8O15397 1037 aaKnown RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms