RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 NEXMIFQ5QGS0 1516 aa9.47□□□□□ -0.89
CUX1-220ENST00000607092 LAMC1P11047 1609 aa9.46□□□□□ -0.89
CUX1-220ENST00000607092 USP21Q9UK80 565 aa9.46□□□□□ -0.9
CUX1-220ENST00000607092 KIF1BO60333 1816 aa9.46□□□□□ -0.9
CUX1-220ENST00000607092 RGS12O14924 1447 aa9.46□□□□□ -0.9
CUX1-220ENST00000607092 ADAMTS2O95450 1211 aa9.45□□□□□ -0.9
CUX1-220ENST00000607092 FNBP4Q8N3X1 1017 aaPredicted RBP9.45□□□□□ -0.9
CUX1-220ENST00000607092 ZRANB1Q9UGI0 708 aa9.44□□□□□ -0.9
CUX1-220ENST00000607092 CLTCL1P53675 1640 aa9.44□□□□□ -0.9
CUX1-220ENST00000607092 NALCNQ8IZF0 1738 aa9.44□□□□□ -0.9
CUX1-220ENST00000607092 CDC42BPGQ6DT37 1551 aa9.43□□□□□ -0.9
CUX1-220ENST00000607092 NAIPQ13075 1403 aa9.43□□□□□ -0.9
CUX1-220ENST00000607092 ROBO2Q9HCK4 1378 aa9.43□□□□□ -0.9
CUX1-220ENST00000607092 ORAI2Q96SN7 254 aa9.43□□□□□ -0.9
CUX1-220ENST00000607092 SRCAPQ6ZRS2 3230 aa9.43□□□□□ -0.9
CUX1-220ENST00000607092 RRBP1Q9P2E9 1410 aaKnown RBP9.42□□□□□ -0.9
CUX1-220ENST00000607092 ANKRD30BQ9BXX2 1392 aa9.42□□□□□ -0.9
CUX1-220ENST00000607092 ESCO1Q5FWF5 840 aa9.42□□□□□ -0.9
CUX1-220ENST00000607092 DDX17Q92841 729 aaKnown RBP9.42□□□□□ -0.9
CUX1-220ENST00000607092 COL22A1Q8NFW1 1626 aaPredicted RBP9.42□□□□□ -0.9
CUX1-220ENST00000607092 ATRNO75882 1429 aa9.41□□□□□ -0.9
CUX1-220ENST00000607092 MYOM2P54296 1465 aa9.4□□□□□ -0.9
CUX1-220ENST00000607092 CCDC144AA2RUR9 1427 aa9.4□□□□□ -0.9
CUX1-220ENST00000607092 TECPR2O15040 1411 aa9.39□□□□□ -0.91
CUX1-220ENST00000607092 SIRT1Q96EB6 747 aa9.39□□□□□ -0.91
CUX1-220ENST00000607092 GJD4Q96KN9 370 aaPredicted RBP9.39□□□□□ -0.91
CUX1-220ENST00000607092 ABCC11Q96J66 1382 aa9.38□□□□□ -0.91
CUX1-220ENST00000607092 FOXO3O43524 673 aa9.38□□□□□ -0.91
CUX1-220ENST00000607092 PSME1Q06323 249 aa9.38□□□□□ -0.91
CUX1-220ENST00000607092 SF3B2Q13435 895 aaKnown RBP9.38□□□□□ -0.91
CUX1-220ENST00000607092 PXDNQ92626 1479 aa9.37□□□□□ -0.91
CUX1-220ENST00000607092 HAP1P54257 671 aaPredicted RBP9.37□□□□□ -0.91
CUX1-220ENST00000607092 UNC5CLQ8IV45 518 aa9.37□□□□□ -0.91
CUX1-220ENST00000607092 FOXD4L1Q9NU39 408 aa9.36□□□□□ -0.91
CUX1-220ENST00000607092 PPLO60437 1756 aa9.36□□□□□ -0.91
CUX1-220ENST00000607092 KIF1AQ12756 1690 aa9.36□□□□□ -0.91
CUX1-220ENST00000607092 SPATA31A3Q5VYP0 1347 aa9.35□□□□□ -0.91
CUX1-220ENST00000607092 BCL9LQ86UU0 1499 aa9.35□□□□□ -0.91
CUX1-220ENST00000607092 BLMP54132 1417 aaPredicted RBP9.35□□□□□ -0.91
CUX1-220ENST00000607092 STK26Q9P289 416 aa9.35□□□□□ -0.91
CUX1-220ENST00000607092 ARHGEF10O15013 1369 aa9.35□□□□□ -0.91
CUX1-220ENST00000607092 EP400Q96L91 3159 aa9.34□□□□□ -0.91
CUX1-220ENST00000607092 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.34□□□□□ -0.91
CUX1-220ENST00000607092 RNF216Q9NWF9 866 aaPredicted RBP9.34□□□□□ -0.91
CUX1-220ENST00000607092 EIF3AQ14152 1382 aaKnown RBP9.34□□□□□ -0.91
CUX1-220ENST00000607092 DHX57Q6P158 1386 aaKnown RBP9.34□□□□□ -0.91
CUX1-220ENST00000607092 ADGRF5Q8IZF2 1346 aa9.33□□□□□ -0.92
CUX1-220ENST00000607092 YTHDC2Q9H6S0 1430 aaKnown RBP9.33□□□□□ -0.92
CUX1-220ENST00000607092 SLIT2O94813 1529 aa9.33□□□□□ -0.92
CUX1-220ENST00000607092 VPS72Q15906 364 aa9.33□□□□□ -0.92
CUX1-220ENST00000607092 RGL3Q3MIN7 710 aa9.33□□□□□ -0.92
CUX1-220ENST00000607092 KRT28Q7Z3Y7 464 aa9.33□□□□□ -0.92
CUX1-220ENST00000607092 PPARGC1BQ86YN6 1023 aaKnown RBP9.33□□□□□ -0.92
CUX1-220ENST00000607092 SBNO1A3KN83 1393 aa9.33□□□□□ -0.92
CUX1-220ENST00000607092 KNDC1Q76NI1 1749 aa9.33□□□□□ -0.92
CUX1-220ENST00000607092 MARF1Q9Y4F3 1742 aaKnown RBP9.33□□□□□ -0.92
CUX1-220ENST00000607092 PIK3C2GO75747 1445 aa9.32□□□□□ -0.92
CUX1-220ENST00000607092 TNS3Q68CZ2 1445 aa9.32□□□□□ -0.92
CUX1-220ENST00000607092 SPATA31E1Q6ZUB1 1445 aa9.32□□□□□ -0.92
CUX1-220ENST00000607092 XPCQ01831 940 aaPredicted RBP9.32□□□□□ -0.92
CUX1-220ENST00000607092 WAPLQ7Z5K2 1190 aa9.32□□□□□ -0.92
CUX1-220ENST00000607092 PHF8Q9UPP1 1060 aa9.32□□□□□ -0.92
CUX1-220ENST00000607092 RALGAPBQ86X10 1494 aa9.32□□□□□ -0.92
CUX1-220ENST00000607092 ANKARQ7Z5J8 1434 aa9.31□□□□□ -0.92
CUX1-220ENST00000607092 NUTM2FA1L443 756 aa9.31□□□□□ -0.92
CUX1-220ENST00000607092 ONECUT3O60422 494 aaPredicted RBP9.31□□□□□ -0.92
CUX1-220ENST00000607092 STAC3Q96MF2 364 aa9.31□□□□□ -0.92
CUX1-220ENST00000607092 MPHOSPH9Q99550 1183 aa9.31□□□□□ -0.92
CUX1-220ENST00000607092 GPRASP1Q5JY77 1395 aa9.3□□□□□ -0.92
CUX1-220ENST00000607092 SEPT12Q8IYM1 358 aa9.3□□□□□ -0.92
CUX1-220ENST00000607092 C14orf93Q9H972 538 aaKnown RBP9.3□□□□□ -0.92
CUX1-220ENST00000607092 POGKQ9P215 609 aa9.3□□□□□ -0.92
CUX1-220ENST00000607092 CCDC9Q9Y3X0 531 aaKnown RBP9.3□□□□□ -0.92
CUX1-220ENST00000607092 FMN2Q9NZ56 1722 aa9.3□□□□□ -0.92
CUX1-220ENST00000607092 USP32Q8NFA0 1604 aa9.3□□□□□ -0.92
CUX1-220ENST00000607092 BAG6P46379 1132 aa9.29□□□□□ -0.92
CUX1-220ENST00000607092 TMEM132EQ6IEE7 984 aa9.29□□□□□ -0.92
CUX1-220ENST00000607092 LMOD2Q6P5Q4 547 aa9.29□□□□□ -0.92
CUX1-220ENST00000607092 KRT27Q7Z3Y8 459 aa9.29□□□□□ -0.92
CUX1-220ENST00000607092 NRXN1Q9ULB1 1477 aa9.28□□□□□ -0.92
CUX1-220ENST00000607092 NWD2Q9ULI1 1742 aa9.28□□□□□ -0.92
CUX1-220ENST00000607092 GLI3P10071 1580 aa9.28□□□□□ -0.92
CUX1-220ENST00000607092 IFT172Q9UG01 1749 aa9.28□□□□□ -0.92
CUX1-220ENST00000607092 DLC1Q96QB1 1528 aa9.27□□□□□ -0.93
CUX1-220ENST00000607092 A0A0G2JS52 829 aa9.27□□□□□ -0.93
CUX1-220ENST00000607092 MYT1Q01538 1121 aa9.27□□□□□ -0.93
CUX1-220ENST00000607092 PLEKHH1Q9ULM0 1364 aa9.26□□□□□ -0.93
CUX1-220ENST00000607092 PRAM1Q96QH2 718 aa9.26□□□□□ -0.93
CUX1-220ENST00000607092 CFAP70Q5T0N1 1121 aa9.24□□□□□ -0.93
CUX1-220ENST00000607092 ADGRB2O60241 1585 aa9.24□□□□□ -0.93
CUX1-220ENST00000607092 FAM83GA6ND36 823 aa9.23□□□□□ -0.93
CUX1-220ENST00000607092 C11orf95C9JLR9 678 aaPredicted RBP9.23□□□□□ -0.93
CUX1-220ENST00000607092 DEFB132Q7Z7B7 95 aa9.23□□□□□ -0.93
CUX1-220ENST00000607092 NGDNQ8NEJ9 315 aaKnown RBP9.23□□□□□ -0.93
CUX1-220ENST00000607092 CABLES1Q8TDN4 633 aa9.23□□□□□ -0.93
CUX1-220ENST00000607092 BTG4Q9NY30 223 aa9.23□□□□□ -0.93
CUX1-220ENST00000607092 LRP5O75197 1615 aa9.23□□□□□ -0.93
CUX1-220ENST00000607092 PARD3Q8TEW0 1356 aa9.23□□□□□ -0.93
CUX1-220ENST00000607092 PLCH1Q4KWH8 1693 aa9.23□□□□□ -0.93
CUX1-220ENST00000607092 SAFB2Q14151 953 aaKnown RBP eCLIP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms